Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT21G0056 Cannabis sativa HOM05D004542 ORTHO05D005380 5.0e-57 224.2 110 100.0
CANSAT21G2357 Cannabis sativa HOM05D004542 ORTHO05D005380 6.5e-57 223.8 109 100.0
Prupe.1G009500 Prunus persica HOM05D004542 ORTHO05D005380 5.0e-33 144.4 110 63.6
Manes.01G033600 Manihot esculenta HOM05D004542 ORTHO05D005380 9.5e-32 140.2 114 63.2
MD04G1010200 Malus domestica HOM05D004542 ORTHO05D005380 3.6e-31 138.3 110 65.5
Cfa004898 Carpinus fangiana HOM05D004542 ORTHO05D005380 6.8e-30 134.0 104 66.3
Haze_11968 Corylus avellana HOM05D004542 ORTHO05D005380 2.0e-29 132.5 105 67.6
Cpa.g.sc69.70 Carica papaya HOM05D004542 ORTHO05D005380 4.4e-29 131.3 112 61.6
Potri.008G090100 Populus trichocarpa HOM05D004542 ORTHO05D005380 1.3e-28 129.8 113 59.3
TWI09G1372 Tripterygium wilfordii HOM05D004542 ORTHO05D005380 2.2e-28 129.0 110 59.1
RcHm_v2.0_Chr4g0415001 Rosa chinensis HOM05D004542 ORTHO05D005380 2.9e-28 128.6 111 61.3
CSS0014017 Camellia sinensis var. sinensis HOM05D004542 ORTHO05D005380 3.7e-28 128.3 114 60.5
CSS0031140 Camellia sinensis var. sinensis HOM05D004542 ORTHO05D005380 3.7e-28 128.3 114 60.5
Potri.010G165100 Populus trichocarpa HOM05D004542 ORTHO05D005380 6.4e-28 127.5 113 58.4
TWI73G0467 Tripterygium wilfordii HOM05D004542 ORTHO05D005380 1.4e-27 126.3 112 56.2
Actinidia31969 Actinidia chinensis HOM05D004542 ORTHO05D005380 1.9e-27 125.9 112 58.0
FvH4_4g13880 Fragaria vesca HOM05D004542 ORTHO05D005380 5.4e-27 124.4 110 58.2
FAN12G3669 Fragaria x ananassa HOM05D004542 ORTHO05D005380 5.4e-27 124.4 110 58.2
RcHm_v2.0_Chr4g0414951 Rosa chinensis HOM05D004542 ORTHO05D005380 5.4e-27 124.4 104 62.5
THA.LOC104808670 Tarenaya hassleriana HOM05D004542 ORTHO05D005380 9.2e-27 123.6 112 57.1
Rhsim05G0092000 Rhododendron simsii HOM05D004542 ORTHO05D005380 1.6e-26 122.9 112 58.0
RhsimUnG0183400 Rhododendron simsii HOM05D004542 ORTHO05D005380 1.6e-26 122.9 112 58.0
Atru.chr11.1738 Acer truncatum HOM05D004542 ORTHO05D005380 2.1e-26 122.5 110 59.1
Cpa.g.sc57.38 Carica papaya HOM05D004542 ORTHO05D005380 2.7e-26 122.1 90 65.6
Sp5g24560 Schrenkiella parvula HOM05D004542 ORTHO05D005380 2.7e-26 122.1 112 59.8
Dinv07945 Davidia involucrata HOM05D004542 ORTHO05D005380 3.5e-26 121.7 109 59.6
Duzib251G0803 Durio zibethinus HOM05D004542 ORTHO05D005380 6.0e-26 120.9 113 56.6
Actinidia17747 Actinidia chinensis HOM05D004542 ORTHO05D005380 7.8e-26 120.6 112 57.1
Ciclev10033055m.g Citrus clementina HOM05D004542 ORTHO05D005380 7.8e-26 120.6 112 58.0
Thecc.02G341300 Theobroma cacao HOM05D004542 ORTHO05D005380 7.8e-26 120.6 113 55.8
Duzib248G0510 Durio zibethinus HOM05D004542 ORTHO05D005380 1.0e-25 120.2 113 55.8
Carub.0001s2428 Capsella rubella HOM05D004542 ORTHO05D005380 1.3e-25 119.8 112 56.2
Manes.05G105400 Manihot esculenta HOM05D004542 ORTHO05D005380 1.7e-25 119.4 113 56.6
Aa31LG7G8390 Aethionema arabicum HOM05D004542 ORTHO05D005380 2.3e-25 119.0 112 58.0
COL.COLO4_32021 Corchorus olitorius HOM05D004542 ORTHO05D005380 2.3e-25 119.0 109 58.7
FAN07G0300 Fragaria x ananassa HOM05D004542 ORTHO05D005380 2.3e-25 119.0 110 56.4
QL05p050003 Quercus lobata HOM05D004542 ORTHO05D005380 2.3e-25 119.0 109 60.6
RcHm_v2.0_Chr6g0251041 Rosa chinensis HOM05D004542 ORTHO05D005380 2.3e-25 119.0 111 59.5
CARHR025220 Cardamine hirsuta HOM05D004542 ORTHO05D005380 6.6e-25 117.5 111 54.1
FAN22G1961 Fragaria x ananassa HOM05D004542 ORTHO05D005380 1.5e-24 116.3 110 56.4
BolC5t31159H Brassica oleracea HOM05D004542 ORTHO05D005380 1.9e-24 115.9 114 51.8
AT1G26740 Arabidopsis thaliana HOM05D004542 ORTHO05D005380 3.3e-24 115.2 112 54.5
CiPaw.06G087700 Carya illinoinensis HOM05D004542 ORTHO05D005380 3.3e-24 115.2 94 63.8
AL1G38970 Arabidopsis lyrata HOM05D004542 ORTHO05D005380 4.3e-24 114.8 112 54.5
C05p24230 Brassica napus HOM05D004542 ORTHO05D005380 4.3e-24 114.8 114 50.9
AL2G28600 Arabidopsis lyrata HOM05D004542 ORTHO05D005380 1.2e-23 113.2 113 56.6
BcaC06g35127 Brassica carinata HOM05D004542 ORTHO05D005380 1.2e-23 113.2 114 51.8
THA.LOC104822040 Tarenaya hassleriana HOM05D004542 ORTHO05D005380 1.2e-23 113.2 113 57.5
BcaC05g26392 Brassica carinata HOM05D004542 ORTHO05D005380 2.8e-23 112.1 114 50.9
C07p19550 Brassica napus HOM05D004542 ORTHO05D005380 2.8e-23 112.1 114 51.8
BolC7t42472H Brassica oleracea HOM05D004542 ORTHO05D005380 2.8e-23 112.1 114 51.8
Sabra08G0067500 Salix brachista HOM05D004542 ORTHO05D005380 2.8e-23 112.1 125 51.2
A07p13070 Brassica napus HOM05D004542 ORTHO05D005380 3.6e-23 111.7 116 50.9
Cc00_g16630 Coffea canephora HOM05D004542 ORTHO05D005380 3.6e-23 111.7 113 58.4
MSTRG.2336 Avicennia marina HOM05D004542 ORTHO05D005380 4.7e-23 111.3 114 57.0
BraA07t29078Z Brassica rapa HOM05D004542 ORTHO05D005380 4.7e-23 111.3 116 50.0
ClCG05G024060 Citrullus lanatus HOM05D004542 ORTHO05D005380 4.7e-23 111.3 115 54.8
BraA09t39513Z Brassica rapa HOM05D004542 ORTHO05D005380 6.2e-23 110.9 114 50.0
Sp1g22070 Schrenkiella parvula HOM05D004542 ORTHO05D005380 6.2e-23 110.9 114 50.9
TAR622G0172 Trochodendron aralioides HOM05D004542 ORTHO05D005380 6.2e-23 110.9 110 57.3
BcaB03g14086 Brassica carinata HOM05D004542 ORTHO05D005380 8.1e-23 110.5 112 52.7
MD13G1284400 Malus domestica HOM05D002269 ORTHO05D005380 1.1e-22 110.2 65 80.0
Nitab4.5_0000391g0330 Nicotiana tabacum HOM05D004542 ORTHO05D005380 1.4e-22 109.8 107 58.9
A09p40150 Brassica napus HOM05D004542 ORTHO05D005380 1.8e-22 109.4 114 49.1
Hund04421 Selenicereus undatus HOM05D004542 ORTHO05D005380 1.8e-22 109.4 111 55.0
Migut.L01259 Erythranthe guttata HOM05D004542 ORTHO05D005380 2.4e-22 109.0 114 56.1
Psat0s1693g0080 Pisum sativum HOM05D004542 ORTHO05D005380 2.4e-22 109.0 110 54.5
Lsat_1_v5_gn_8_48901 Lactuca sativa HOM05D004542 ORTHO05D005380 3.1e-22 108.6 88 60.2
Peaxi162Scf00222g00329 Petunia axillaris HOM05D004542 ORTHO05D005380 3.1e-22 108.6 108 58.3
Glyma.05G118100 Glycine max HOM05D004542 ORTHO05D005380 5.2e-22 107.8 110 56.4
Nitab4.5_0013306g0010 Nicotiana tabacum HOM05D004542 ORTHO05D005380 5.2e-22 107.8 108 56.5
Thhalv10009076m.g Eutrema salsugineum HOM05D004542 ORTHO05D005380 1.5e-21 106.3 112 52.7
CsaV3_5G032980 Cucumis sativus L. HOM05D004542 ORTHO05D005380 2.0e-21 105.9 114 52.6
Sc14g0007580 Simmondsia chinensis HOM05D004542 ORTHO05D005380 2.6e-21 105.5 110 54.5
TPR.G5742 Trifolium pratense HOM05D004542 ORTHO05D005380 3.4e-21 105.1 110 54.5
Glyma.08G073000 Glycine max HOM05D004542 ORTHO05D005380 4.4e-21 104.8 110 55.5
PGR083G2602 Punica granatum HOM05D004542 ORTHO05D005380 4.4e-21 104.8 111 55.9
arahy.Tifrunner.gnm1.ann1.53F0XR Arachis hypogaea HOM05D004542 ORTHO05D005380 5.8e-21 104.4 109 53.2
arahy.Tifrunner.gnm1.ann1.H527P9 Arachis hypogaea HOM05D004542 ORTHO05D005380 5.8e-21 104.4 109 53.2
Hma1.2p1_0357F.1_g134240 Hydrangea macrophylla HOM05D004542 ORTHO05D005380 5.8e-21 104.4 73 67.1
Nitab4.5_0001077g0020 Nicotiana tabacum HOM05D004542 ORTHO05D005380 7.6e-21 104.0 111 54.1
Sc03g0001820 Simmondsia chinensis HOM05D004542 ORTHO05D005380 7.6e-21 104.0 110 51.8
HanXRQChr12g0361941 Helianthus annuus HOM05D004542 ORTHO05D005380 1.7e-20 102.8 89 58.4
Solyc04g005590.3 Solanum lycopersicum HOM05D004542 ORTHO05D005380 1.7e-20 102.8 114 56.1
Sed0021036 Sechium edule HOM05D004542 ORTHO05D005380 2.9e-20 102.1 114 50.0
Peaxi162Scf00023g02531 Petunia axillaris HOM05D004542 ORTHO05D005380 3.8e-20 101.7 90 61.1
Ca_18347_v3 Cicer arietinum L. HOM05D004542 ORTHO05D005380 1.1e-19 100.1 112 53.6
Oeu001710.1 Olea europaea HOM05D004542 ORTHO05D005380 1.1e-19 100.1 112 52.7
Sopen04g001630 Solanum pennellii HOM05D004542 ORTHO05D005380 1.1e-19 100.1 108 56.5
Aqoxy3G03464 Aquilegia oxysepala HOM05D004542 ORTHO05D005380 1.4e-19 99.8 110 53.6
Gohir.A07G047800 Gossypium hirsutum HOM05D004542 ORTHO05D005380 2.4e-19 99.0 117 51.3
Solyc05g013190.4 Solanum lycopersicum HOM05D004542 ORTHO05D005380 2.4e-19 99.0 111 55.0
PGSC0003DMG400002854 Solanum tuberosum HOM05D004542 ORTHO05D005380 2.4e-19 99.0 114 54.4
MELO3C012119.2 Cucumis melo HOM05D004542 ORTHO05D005380 3.2e-19 98.6 113 51.3
MBI02_g20485_MAGBIO Magnolia biondii HOM05D004542 ORTHO05D005380 4.1e-19 98.2 111 47.7
Phvul.002G208200 Phaseolus vulgaris HOM05D004542 ORTHO05D005380 4.1e-19 98.2 112 53.6
HanXRQChr15g0476941 Helianthus annuus HOM05D004542 ORTHO05D005380 9.2e-19 97.1 88 59.1
Sopen05g007930 Solanum pennellii HOM05D004542 ORTHO05D005380 9.2e-19 97.1 111 54.1
Gohir.D07G052100 Gossypium hirsutum HOM05D004542 ORTHO05D005380 1.2e-18 96.7 119 49.6
Gorai.001G055100 Gossypium raimondii HOM05D004542 ORTHO05D005380 2.1e-18 95.9 121 48.8
Lalb_Chr10g0097781 Lupinus albus HOM05D004542 ORTHO05D005380 2.7e-18 95.5 111 54.1
Medtr1g025320 Medicago truncatula HOM05D004542 ORTHO05D005380 2.7e-18 95.5 97 55.7
VMungo0251G2924 Vigna mungo HOM05D004542 ORTHO05D005380 3.5e-18 95.1 112 52.7
ECA233G6069 Erigeron canadensis HOM05D004542 ORTHO05D005380 4.6e-18 94.7 89 57.3
Eucgr.D00185 Eucalyptus grandis HOM05D004542 ORTHO05D005380 4.6e-18 94.7 95 55.8
Nn3g17306 Nelumbo nucifera HOM05D004542 ORTHO05D005380 3.9e-17 91.7 110 49.1
SalBow1G8597 Salvia bowleyana HOM05D004542 ORTHO05D005380 3.9e-17 91.7 107 49.5
Nn3g18387 Nelumbo nucifera HOM05D004542 ORTHO05D005380 1.1e-16 90.1 110 48.2
Oeu054854.1 Olea europaea HOM05D004542 ORTHO05D005380 2.5e-16 89.0 113 52.2
AUR62031723 Chenopodium quinoa HOM05D004542 ORTHO05D005380 3.3e-16 88.6 111 47.7
ECA246G0207 Erigeron canadensis HOM05D004542 ORTHO05D005380 1.6e-15 86.3 112 49.1
DCAR_027429 Daucus carota HOM05D004542 ORTHO05D005380 2.1e-15 85.9 159 37.1
Glyma.06G320500 Glycine max HOM05D004542 ORTHO05D005380 2.1e-15 85.9 107 49.5
PSO063G3361 Papaver somniferum HOM05D004542 ORTHO05D005380 2.8e-15 85.5 104 49.0
MBI02_g44667_MAGBIO Magnolia biondii HOM05D004542 ORTHO05D005380 8.1e-15 84.0 106 44.3
SalBow1G4390 Salvia bowleyana HOM05D004542 ORTHO05D005380 8.1e-15 84.0 108 47.2
SalBow1G7833 Salvia bowleyana HOM05D004542 ORTHO05D005380 8.1e-15 84.0 107 46.7
EL10Ac2g02750 Beta vulgaris HOM05D004542 ORTHO05D005380 1.1e-14 83.6 112 46.4
SGA_v2.0_scaffold455G51899 Striga asiatica HOM05D004542 ORTHO05D005380 1.1e-14 83.6 107 49.5
Lj4g0012875 Lotus japonicus HOM05D004542 ORTHO05D005380 1.4e-14 83.2 110 52.7
TPR.G8852 Trifolium pratense HOM05D004542 ORTHO05D005380 1.8e-14 82.8 109 45.9
CDE04G0708 Ceratophyllum demersum HOM05D004542 ORTHO05D005380 5.2e-14 81.3 111 46.8
PSO782G1969 Papaver somniferum HOM05D004542 ORTHO05D005380 5.2e-14 81.3 104 47.1
Ciclev10013639m.g Citrus clementina HOM05D004542 ORTHO05D005380 6.9e-14 80.9 113 45.1
Lj4g0007672 Lotus japonicus HOM05D004542 ORTHO05D005380 6.9e-14 80.9 110 50.0
vmacro01351 Vaccinium macrocarpon HOM05D004542 ORTHO05D005380 1.2e-13 80.1 87 51.7
Ah.08g212630 Amaranthus hybridus HOM05D004542 ORTHO05D005380 5.8e-13 77.8 87 48.3
Glyma.04G115800 Glycine max HOM05D004542 ORTHO05D005380 5.8e-13 77.8 107 45.8
Sabra10G0125700 Salix brachista HOM05D004542 ORTHO05D005380 7.6e-13 77.4 95 47.4
COL.COLO4_27991 Corchorus olitorius HOM05D004542 ORTHO05D005380 1.1e-11 73.6 102 46.1
CDE07G0585 Ceratophyllum demersum HOM05D004542 ORTHO05D005380 3.2e-11 72.0 68 57.4
SalBow1G1756 Salvia bowleyana HOM05D004542 ORTHO05D005380 2.7e-10 68.9 35 82.9
AUR62032610 Chenopodium quinoa HOM05D004542 ORTHO05D005380 3.5e-10 68.6 145 34.5
AT1G69485 Arabidopsis thaliana HOM05D004542 ORTHO05D005380 4.6e-10 68.2 35 85.7
Os03g0168900 Oryza sativa ssp. japonica HOM05D004542 ORTHO05D005380 1.0e-09 67.0 61 54.1
COL.COLO4_27990 Corchorus olitorius HOM05D004542 ORTHO05D005380 6.6e-09 64.3 84 46.4
Zm00001eb005320 Zea mays HOM05D004542 ORTHO05D005380 6.6e-09 64.3 37 75.7
Os10g0407100 Oryza sativa ssp. japonica HOM05D004542 ORTHO05D005380 1.1e-08 63.5 36 75.0
Zm00001eb402400 Zea mays HOM05D004542 ORTHO05D005380 1.9e-08 62.8 38 71.1
PGSC0003DMG400005564 Solanum tuberosum HOM05D004542 ORTHO05D005380 2.5e-08 62.4 86 50.0
Sopen03g017060 Solanum pennellii HOM05D004542 ORTHO05D005380 1.4e-06 56.6 36 66.7
unitig_8.g3954 Utricularia gibba HOM05D006796 ORTHO05D008615 2.4e-06 55.8 28 78.6
Pp3c1_32410 Physcomitrium patens HOM05D004542 ORTHO05D005380 5.3e-06 54.7 104 32.7
SEGI_34151 Sequoiadendron giganteum HOM05D004542 ORTHO05D005380 9.0e-06 53.9 36 63.9


User provided reference genes

Program Settings