Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT21G0001 Cannabis sativa HOM05D002916 ORTHO05D003152 1.0e-82 310.1 160 100.0
Thecc.03G207400 Theobroma cacao HOM05D002916 ORTHO05D003152 3.3e-25 119.0 147 50.3
CiPaw.06G042000 Carya illinoinensis HOM05D002916 ORTHO05D003152 6.2e-24 114.8 145 50.3
Duzib084G1372 Durio zibethinus HOM05D002916 ORTHO05D003152 1.1e-23 114.0 146 46.6
COL.COLO4_14359 Corchorus olitorius HOM05D002916 ORTHO05D003152 3.1e-23 112.5 148 48.0
Manes.01G042300 Manihot esculenta HOM05D002916 ORTHO05D003152 3.1e-23 112.5 140 47.1
Dinv29219 Davidia involucrata HOM05D002916 ORTHO05D003152 3.4e-22 109.0 148 51.4
Cfa016172 Carpinus fangiana HOM05D002916 ORTHO05D003152 4.5e-22 108.6 145 46.9
Haze_00282 Corylus avellana HOM05D002916 ORTHO05D003152 4.5e-22 108.6 146 47.9
QL02p027552 Quercus lobata HOM05D002916 ORTHO05D003152 2.2e-21 106.3 143 48.3
QL09p007312 Quercus lobata HOM05D002916 ORTHO05D003152 2.2e-21 106.3 146 47.3
Hma1.2p1_0094F.1_g047290 Hydrangea macrophylla HOM05D002916 ORTHO05D003152 6.4e-21 104.8 161 44.1
Atru.chr12.2401 Acer truncatum HOM05D002916 ORTHO05D003152 1.4e-20 103.6 151 43.0
Gohir.D12G247400 Gossypium hirsutum HOM05D002916 ORTHO05D003152 1.9e-20 103.2 165 43.0
Potri.012G022300 Populus trichocarpa HOM05D002916 ORTHO05D003152 9.3e-20 100.9 147 43.5
Gohir.A12G246700 Gossypium hirsutum HOM05D002916 ORTHO05D003152 1.2e-19 100.5 165 43.0
Prupe.2G317800 Prunus persica HOM05D002916 ORTHO05D003152 2.1e-19 99.8 147 44.9
Gorai.008G265400 Gossypium raimondii HOM05D002916 ORTHO05D003152 2.7e-19 99.4 146 43.8
TWI23G0095 Tripterygium wilfordii HOM05D002916 ORTHO05D003152 7.9e-19 97.8 145 42.8
Phvul.009G046400 Phaseolus vulgaris HOM05D002916 ORTHO05D003152 1.3e-18 97.1 155 39.4
VMungo1309G2175 Vigna mungo HOM05D002916 ORTHO05D003152 1.3e-18 97.1 155 41.3
Sabra12G0011500 Salix brachista HOM05D002916 ORTHO05D003152 1.8e-18 96.7 145 44.1
Actinidia34261 Actinidia chinensis HOM05D002916 ORTHO05D003152 8.7e-18 94.4 143 43.4
MBI04_g15577_MAGBIO Magnolia biondii HOM05D002916 ORTHO05D003152 1.1e-17 94.0 145 40.0
Potri.015G005700 Populus trichocarpa HOM05D002916 ORTHO05D003152 1.1e-17 94.0 145 43.4
Rhsim03G0214600 Rhododendron simsii HOM05D001023 ORTHO05D000912 1.1e-17 94.0 167 41.3
RcHm_v2.0_Chr1g0382771 Rosa chinensis HOM05D002916 ORTHO05D003152 1.1e-17 94.0 147 40.8
TAR636G0145 Trochodendron aralioides HOM05D002916 ORTHO05D003152 1.1e-17 94.0 145 42.1
Glyma.04G229700 Glycine max HOM05D002916 ORTHO05D003152 1.5e-17 93.6 146 41.1
Haze_09193 Corylus avellana HOM05D002916 ORTHO05D003152 9.6e-17 90.9 162 37.0
DCAR_020363 Daucus carota HOM05D002916 ORTHO05D003152 1.3e-16 90.5 146 43.8
Duzib068G0006 Durio zibethinus HOM05D002916 ORTHO05D003152 2.1e-16 89.7 129 45.7
Eucgr.K00425 Eucalyptus grandis HOM05D002916 ORTHO05D003152 2.1e-16 89.7 148 39.2
Glyma.06G135000 Glycine max HOM05D002916 ORTHO05D003152 2.8e-16 89.4 145 40.7
Nn3g18859 Nelumbo nucifera HOM05D002916 ORTHO05D003152 2.8e-16 89.4 153 39.2
FAN10G3649 Fragaria x ananassa HOM05D002916 ORTHO05D003152 3.7e-16 89.0 146 39.7
Psat5g073040 Pisum sativum HOM05D002916 ORTHO05D003152 3.7e-16 89.0 146 40.4
FAN10G0037 Fragaria x ananassa HOM05D002916 ORTHO05D003152 4.8e-16 88.6 146 39.7
PSO478G4364 Papaver somniferum HOM05D002916 ORTHO05D003152 4.8e-16 88.6 155 40.0
Manes.12G116500 Manihot esculenta HOM05D002916 ORTHO05D003152 1.1e-15 87.4 148 38.5
FAN01G1170 Fragaria x ananassa HOM05D002916 ORTHO05D003152 1.4e-15 87.0 146 41.1
PSO478G4153 Papaver somniferum HOM05D002916 ORTHO05D003152 1.8e-15 86.7 159 37.7
FAN03G0202 Fragaria x ananassa HOM05D002916 ORTHO05D003152 3.1e-15 85.9 147 37.4
Lalb_Chr08g0239761 Lupinus albus HOM05D002916 ORTHO05D003152 4.0e-15 85.5 144 41.0
Sed0016396 Sechium edule HOM05D002916 ORTHO05D003152 4.0e-15 85.5 148 37.2
SEGI_19412 Sequoiadendron giganteum HOM05D002916 ORTHO05D003152 9.0e-15 84.3 163 37.4
Duzib093G0112 Durio zibethinus HOM05D002916 ORTHO05D003152 1.2e-14 84.0 158 41.1
Ca_16766_v3 Cicer arietinum L. HOM05D002916 ORTHO05D003152 1.5e-14 83.6 159 37.7
Ciclev10012941m.g Citrus clementina HOM05D002916 ORTHO05D003152 1.5e-14 83.6 156 38.5
MELO3C005922.2 Cucumis melo HOM05D002916 ORTHO05D003152 3.4e-14 82.4 146 35.6
TPR.G36204 Trifolium pratense HOM05D002916 ORTHO05D003152 4.5e-14 82.0 168 33.9
Aqoxy4G02773 Aquilegia oxysepala HOM05D002916 ORTHO05D003152 1.0e-13 80.9 156 37.8
PGR042G3508 Punica granatum HOM05D002916 ORTHO05D003152 1.3e-13 80.5 160 34.4
ClCG01G000110 Citrullus lanatus HOM05D002916 ORTHO05D003152 1.7e-13 80.1 146 34.9
ATR0078G023 Amborella trichopoda HOM05D002916 ORTHO05D003152 2.9e-13 79.3 149 38.3
PSO266G0041 Papaver somniferum HOM05D002916 ORTHO05D003152 3.8e-13 79.0 156 37.2
Medtr3g092470 Medicago truncatula HOM05D002916 ORTHO05D003152 4.9e-13 78.6 164 37.2
CsaV3_5G000050 Cucumis sativus L. HOM05D002916 ORTHO05D003152 6.5e-13 78.2 146 34.9
DCAR_008976 Daucus carota HOM05D002916 ORTHO05D003152 8.4e-13 77.8 149 34.9
Thecc.05G089800 Theobroma cacao HOM05D002916 ORTHO05D003152 3.2e-12 75.9 159 39.6
COL.COLO4_29727 Corchorus olitorius HOM05D002916 ORTHO05D003152 7.1e-12 74.7 161 36.6
Gohir.D01G195600 Gossypium hirsutum HOM05D002916 ORTHO05D003152 2.7e-11 72.8 165 34.5
Manes.09G055000 Manihot esculenta HOM05D002916 ORTHO05D003152 2.7e-11 72.8 155 34.8
Gohir.A01G206200 Gossypium hirsutum HOM05D002916 ORTHO05D003152 3.5e-11 72.4 166 33.1
Gorai.002G239800 Gossypium raimondii HOM05D002916 ORTHO05D003152 3.5e-11 72.4 165 34.5
Atru.chr8.1530 Acer truncatum HOM05D002916 ORTHO05D003152 4.6e-11 72.0 156 37.2
AUR62035612 Chenopodium quinoa HOM05D002916 ORTHO05D003152 4.6e-11 72.0 114 42.1
Manes.08G025700 Manihot esculenta HOM05D002916 ORTHO05D003152 4.6e-11 72.0 159 34.6
Atru.chr8.1528 Acer truncatum HOM05D002916 ORTHO05D003152 1.0e-10 70.9 157 36.9
FAN05G4254 Fragaria x ananassa HOM05D002916 ORTHO05D003152 1.3e-10 70.5 170 34.1
FvH4_6g18810 Fragaria vesca HOM05D002916 ORTHO05D003152 1.8e-10 70.1 160 35.6
FAN05G3486 Fragaria x ananassa HOM05D002916 ORTHO05D003152 1.8e-10 70.1 170 34.1
FAN14G1204 Fragaria x ananassa HOM05D002916 ORTHO05D003152 1.8e-10 70.1 160 35.6
Gohir.D04G099400 Gossypium hirsutum HOM05D002916 ORTHO05D003152 1.8e-10 70.1 154 35.7
Gorai.009G402300 Gossypium raimondii HOM05D002916 ORTHO05D003152 1.8e-10 70.1 154 35.7
EL10Ac3g05192 Beta vulgaris HOM05D002916 ORTHO05D003152 2.3e-10 69.7 127 39.4
SalBow6G0378 Salvia bowleyana HOM05D002916 ORTHO05D003152 2.3e-10 69.7 143 37.8
Ciclev10013433m.g Citrus clementina HOM05D002916 ORTHO05D003152 3.0e-10 69.3 165 34.5
TWI53G0172 Tripterygium wilfordii HOM05D002916 ORTHO05D003152 3.0e-10 69.3 158 35.4
TWI74G0225 Tripterygium wilfordii HOM05D002916 ORTHO05D003152 3.0e-10 69.3 161 38.5
Cpa.g.sc5.15 Carica papaya HOM05D002916 ORTHO05D003152 3.9e-10 68.9 163 32.5
Sabra15G0004100 Salix brachista HOM05D002916 ORTHO05D003152 5.1e-10 68.6 144 36.1
EL10Ac3g05193 Beta vulgaris HOM05D002916 ORTHO05D003152 6.7e-10 68.2 138 37.7
Migut.F00158 Erythranthe guttata HOM05D002916 ORTHO05D003152 6.7e-10 68.2 162 30.2
DCAR_013390 Daucus carota HOM05D002916 ORTHO05D003152 8.7e-10 67.8 159 28.3
CDE12G0661 Ceratophyllum demersum HOM05D002916 ORTHO05D003152 1.1e-09 67.4 134 35.8
MSTRG.26638 Avicennia marina HOM05D002916 ORTHO05D003152 1.5e-09 67.0 163 33.7
Ah.13g070720 Amaranthus hybridus HOM05D002916 ORTHO05D003152 2.5e-09 66.2 166 28.9
DCAR_013392 Daucus carota HOM05D002916 ORTHO05D003152 2.5e-09 66.2 155 30.3
Glyma.19G194943 Glycine max HOM05D002916 ORTHO05D003152 2.5e-09 66.2 156 30.1
QL05p034193 Quercus lobata HOM05D002916 ORTHO05D003152 2.5e-09 66.2 156 31.4
DCAR_013389 Daucus carota HOM05D002916 ORTHO05D003152 4.3e-09 65.5 158 29.1
Gohir.A04G062400 Gossypium hirsutum HOM05D002916 ORTHO05D003152 4.3e-09 65.5 154 33.1
Lalb_Chr01g0018131 Lupinus albus HOM05D002916 ORTHO05D003152 4.3e-09 65.5 161 29.2
Dinv31688 Davidia involucrata HOM05D004140 ORTHO05D006116 5.7e-09 65.1 159 35.2
Nn6g34891 Nelumbo nucifera HOM05D002916 ORTHO05D003152 5.7e-09 65.1 156 33.3
Oeu047865.1 Olea europaea HOM05D002916 ORTHO05D003152 5.7e-09 65.1 156 32.1
Peaxi162Scf00404g00102 Petunia axillaris HOM05D002916 ORTHO05D003152 5.7e-09 65.1 167 31.1
FAN02G4366 Fragaria x ananassa HOM05D002916 ORTHO05D003152 7.4e-09 64.7 160 35.0
Phvul.001G190500 Phaseolus vulgaris HOM05D002916 ORTHO05D003152 7.4e-09 64.7 158 30.4
Sabra05G0140200 Salix brachista HOM05D002916 ORTHO05D003152 9.7e-09 64.3 144 34.0
DCAR_013391 Daucus carota HOM05D002916 ORTHO05D003152 1.3e-08 63.9 161 33.5
Duzib128G0442 Durio zibethinus HOM05D002916 ORTHO05D003152 1.3e-08 63.9 159 35.2
Migut.L01781 Erythranthe guttata HOM05D002916 ORTHO05D003152 1.3e-08 63.9 160 30.6
Gohir.A07G134900 Gossypium hirsutum HOM05D002916 ORTHO05D003152 1.6e-08 63.5 146 32.2
Oeu056929.1 Olea europaea HOM05D002916 ORTHO05D003152 1.6e-08 63.5 157 29.3
Potri.006G213100 Populus trichocarpa HOM05D002916 ORTHO05D003152 1.6e-08 63.5 163 34.4
Prupe.7G109500 Prunus persica HOM05D002916 ORTHO05D003152 1.6e-08 63.5 159 35.2
AUR62006014 Chenopodium quinoa HOM05D002916 ORTHO05D003152 2.2e-08 63.2 115 40.0
AT5G03890 Arabidopsis thaliana HOM05D002916 ORTHO05D003152 2.8e-08 62.8 177 28.2
Glyma.13G153800 Glycine max HOM05D002916 ORTHO05D003152 2.8e-08 62.8 162 34.0
PGR004G1189 Punica granatum HOM05D002916 ORTHO05D003152 2.8e-08 62.8 152 30.3
VMungo1383G0514 Vigna mungo HOM05D002916 ORTHO05D003152 2.8e-08 62.8 158 29.7
BolC9t60038H Brassica oleracea HOM05D002916 ORTHO05D003152 3.7e-08 62.4 176 29.0
Rhsim03G0074900 Rhododendron simsii HOM05D002916 ORTHO05D003152 3.7e-08 62.4 164 32.3
C03p01810 Brassica napus HOM05D002916 ORTHO05D003152 6.3e-08 61.6 181 29.3
Haze_16634 Corylus avellana HOM05D002916 ORTHO05D003152 8.2e-08 61.2 161 31.1
Gohir.A11G003500 Gossypium hirsutum HOM05D002916 ORTHO05D003152 8.2e-08 61.2 146 31.5
RcHm_v2.0_Chr3g0473821 Rosa chinensis HOM05D002916 ORTHO05D003152 8.2e-08 61.2 159 33.3
Haze_16636 Corylus avellana HOM05D002916 ORTHO05D003152 1.1e-07 60.8 161 31.1
Sc13g0010210 Simmondsia chinensis HOM05D002916 ORTHO05D003152 1.1e-07 60.8 108 40.7
A03p01480 Brassica napus HOM05D002916 ORTHO05D003152 1.4e-07 60.5 178 27.5
BraA03t09526Z Brassica rapa HOM05D002916 ORTHO05D003152 1.4e-07 60.5 178 27.5
DCAR_007755 Daucus carota HOM05D002916 ORTHO05D003152 1.4e-07 60.5 155 32.3
Gohir.D09G135200 Gossypium hirsutum HOM05D002916 ORTHO05D003152 1.4e-07 60.5 146 32.2
Gorai.006G155100 Gossypium raimondii HOM05D002916 ORTHO05D003152 1.4e-07 60.5 146 32.2
CARHR209370 Cardamine hirsuta HOM05D002916 ORTHO05D003152 1.8e-07 60.1 179 29.6
Potri.016G079700 Populus trichocarpa HOM05D002916 ORTHO05D003152 1.8e-07 60.1 158 33.5
Nn2g14164 Nelumbo nucifera HOM05D002916 ORTHO05D003152 2.4e-07 59.7 158 31.6
AL6G13470 Arabidopsis lyrata HOM05D002916 ORTHO05D003152 3.1e-07 59.3 178 28.1
C09p73040 Brassica napus HOM05D002916 ORTHO05D003152 3.1e-07 59.3 175 29.7
Ca_09009_v3 Cicer arietinum L. HOM05D002916 ORTHO05D003152 3.1e-07 59.3 161 29.2
A10p32230 Brassica napus HOM05D002916 ORTHO05D003152 4.1e-07 58.9 174 29.3
BraA10t45266Z Brassica rapa HOM05D002916 ORTHO05D003152 4.1e-07 58.9 174 29.3
Cc06_g05820 Coffea canephora HOM05D002916 ORTHO05D003152 4.1e-07 58.9 159 28.9
CiPaw.01G252200 Carya illinoinensis HOM05D002916 ORTHO05D003152 5.3e-07 58.5 158 29.7
Glyma.03G196300 Glycine max HOM05D002916 ORTHO05D003152 5.3e-07 58.5 156 28.2
Eucgr.K02033 Eucalyptus grandis HOM05D002916 ORTHO05D003152 9.0e-07 57.8 176 30.1
Solyc09g009810.1 Solanum lycopersicum HOM05D002916 ORTHO05D003152 1.2e-06 57.4 187 28.9
Gohir.A05G000100 Gossypium hirsutum HOM05D002916 ORTHO05D003152 1.5e-06 57.0 146 30.8
Gohir.A09G139400 Gossypium hirsutum HOM05D002916 ORTHO05D003152 1.5e-06 57.0 115 33.9
PGSC0003DMG400008880 Solanum tuberosum HOM05D002916 ORTHO05D003152 1.5e-06 57.0 188 27.1
Carub.0006s0284 Capsella rubella HOM05D002916 ORTHO05D003152 2.6e-06 56.2 178 28.7
arahy.Tifrunner.gnm1.ann1.1GMW3T Arachis hypogaea HOM05D002916 ORTHO05D003152 3.4e-06 55.8 185 29.2
arahy.Tifrunner.gnm1.ann1.T8X57X Arachis hypogaea HOM05D002916 ORTHO05D003152 3.4e-06 55.8 185 29.2
ClCG04G010060 Citrullus lanatus HOM05D002916 ORTHO05D003152 3.4e-06 55.8 173 28.9
Cfa001906 Carpinus fangiana HOM05D002916 ORTHO05D003152 4.5e-06 55.5 161 28.0
CsaV3_6G040690 Cucumis sativus L. HOM05D002916 ORTHO05D003152 4.5e-06 55.5 181 29.3
Oeu055381.1 Olea europaea HOM05D002916 ORTHO05D003152 4.5e-06 55.5 58 56.9
MELO3C024547.2 Cucumis melo HOM05D002916 ORTHO05D003152 5.9e-06 55.1 183 28.4
Glyma.10G072400 Glycine max HOM05D002916 ORTHO05D003152 5.9e-06 55.1 168 31.5
Actinidia05426 Actinidia chinensis HOM05D002916 ORTHO05D003152 7.7e-06 54.7 169 30.2
COL.COLO4_10818 Corchorus olitorius HOM05D002916 ORTHO05D029086 7.7e-06 54.7 84 35.7
Sp6g38840 Schrenkiella parvula HOM05D002916 ORTHO05D003152 7.7e-06 54.7 173 28.9
EL10Ac3g05191 Beta vulgaris HOM05D002916 ORTHO05D003152 1.0e-05 54.3 88 37.5


User provided reference genes

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