Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT16G0041 Cannabis sativa HOM05D006604 ORTHO05D007974 2.6e-127 458.8 240 100.0
HanXRQMTg0579671 Helianthus annuus HOM05D006604 ORTHO05D007974 1.8e-123 446.0 240 96.7
HanXRQChr11g0320231 Helianthus annuus HOM05D006604 ORTHO05D007974 3.3e-122 441.8 240 95.8
AT2G07741 Arabidopsis thaliana HOM05D006604 ORTHO05D007974 3.8e-118 428.3 240 92.9
ATMG00410 Arabidopsis thaliana HOM05D006604 ORTHO05D007974 3.8e-118 428.3 240 92.9
ATMG01170 Arabidopsis thaliana HOM05D006604 ORTHO05D007974 3.8e-118 428.3 240 92.9
BcaB06g27871 Brassica carinata HOM05D006604 ORTHO05D007974 3.8e-118 428.3 240 92.5
BolSC28t60364H Brassica oleracea HOM05D006604 ORTHO05D007974 3.8e-118 428.3 240 92.5
BraSC177t45762Z Brassica rapa HOM05D006604 ORTHO05D007974 3.8e-118 428.3 240 92.5
BraSC48t46229Z Brassica rapa HOM05D006604 ORTHO05D007974 3.8e-118 428.3 240 92.5
BraSC48t46317Z Brassica rapa HOM05D006604 ORTHO05D007974 3.8e-118 428.3 240 92.5
CARHR282790 Cardamine hirsuta HOM05D006604 ORTHO05D007974 3.8e-118 428.3 240 92.9
CARHR283400 Cardamine hirsuta HOM05D006604 ORTHO05D007974 3.8e-118 428.3 240 92.9
BraSC54t46362Z Brassica rapa HOM05D006604 ORTHO05D007974 2.7e-116 422.2 241 91.7
Lalb_Chr00c29g0408041 Lupinus albus HOM05D006604 ORTHO05D007974 3.6e-116 421.8 239 91.6
Lalb_Chr01g0011021 Lupinus albus HOM05D006604 ORTHO05D007974 1.4e-112 409.8 239 89.5
CAN.G659.3 Capsicum annuum HOM05D006604 ORTHO05D007974 3.1e-112 408.7 239 90.8
RcHm_v2.0_MTg0498771 Rosa chinensis HOM05D006604 ORTHO05D007974 7.2e-109 397.5 239 89.1
FAN20G1951 Fragaria x ananassa HOM05D006604 ORTHO05D007974 2.1e-108 396.0 239 87.9
PGR028G0012 Punica granatum HOM05D006604 ORTHO05D007974 2.7e-108 395.6 239 88.3
SHI53023 Sapria himalayana HOM05D006604 ORTHO05D007974 2.7e-108 395.6 239 87.9
Sed0019535 Sechium edule HOM05D006604 ORTHO05D007974 2.7e-108 395.6 239 88.3
DCAR_032438 Daucus carota HOM05D006604 ORTHO05D007974 3.0e-107 392.1 239 87.9
Nn1g10085 Nelumbo nucifera HOM05D006604 ORTHO05D007974 1.7e-105 386.3 239 87.4
Aqoxy1G02966 Aquilegia oxysepala HOM05D006604 ORTHO05D007974 2.2e-102 375.9 239 84.9
Aqoxy12s025 Aquilegia oxysepala HOM05D006604 ORTHO05D007974 2.9e-102 375.6 239 84.9
HanXRQChr13g0388581 Helianthus annuus HOM05D006604 ORTHO05D007974 6.5e-102 374.4 240 83.8
arahy.Tifrunner.gnm1.ann1.QPI8J1 Arachis hypogaea HOM05D006604 ORTHO05D007974 4.7e-100 368.2 239 82.8
Sp3g25850 Schrenkiella parvula HOM05D006604 ORTHO05D007974 1.8e-96 356.3 240 80.0
Nn044s41811 Nelumbo nucifera HOM05D006604 ORTHO05D007974 7.0e-96 354.4 215 88.4
Lsat_1_v5_gn_5_16121 Lactuca sativa HOM05D006604 ORTHO05D007974 5.2e-91 338.2 238 79.0
SEGI_09870 Sequoiadendron giganteum HOM05D006604 ORTHO05D007974 5.7e-90 334.7 239 79.5
SEGI_38071 Sequoiadendron giganteum HOM05D006604 ORTHO05D007974 5.7e-90 334.7 239 79.5
SalBow1G2924 Salvia bowleyana HOM05D006604 ORTHO05D007974 8.3e-89 330.9 240 75.4
SEGI_16408 Sequoiadendron giganteum HOM05D006604 ORTHO05D007974 1.4e-88 330.1 239 78.2
Gorai.001G160500 Gossypium raimondii HOM05D006604 ORTHO05D007974 1.0e-86 323.9 239 76.2
SEGI_30085 Sequoiadendron giganteum HOM05D006604 ORTHO05D007974 6.2e-84 314.7 223 79.8
SHI41364 Sapria himalayana HOM05D006604 ORTHO05D007974 1.5e-82 310.1 223 76.7
SHI42031 Sapria himalayana HOM05D006604 ORTHO05D007974 1.5e-82 310.1 223 76.7
Nitab4.5_0000859g0030 Nicotiana tabacum HOM05D006604 ORTHO05D007974 2.6e-82 309.3 239 74.5
SHI54324 Sapria himalayana HOM05D006604 ORTHO05D007974 2.6e-82 309.3 223 76.7
SHI50293 Sapria himalayana HOM05D006604 ORTHO05D007974 3.4e-82 308.9 193 83.9
BolSC28t60307H Brassica oleracea HOM05D006604 ORTHO05D007974 1.7e-81 306.6 167 96.4
LjContig00446g0008739 Lotus japonicus HOM05D006604 ORTHO05D007974 1.1e-77 293.9 172 90.1
Nitab4.5_0006806g0110 Nicotiana tabacum HOM05D006604 ORTHO05D007974 1.3e-70 270.4 239 66.9
CsaV3_UNG209110 Cucumis sativus L. HOM05D006604 ORTHO05D007974 3.3e-69 265.8 223 69.1
RcHm_v2.0_Chr6g0256721 Rosa chinensis HOM05D006604 ORTHO05D007974 2.8e-68 262.7 169 85.2
SGA_v2.0_scaffold245G44658 Striga asiatica HOM05D006604 ORTHO05D007974 6.2e-68 261.5 239 65.3
LjContig00439g0024190 Lotus japonicus HOM05D006604 ORTHO05D007974 1.0e-62 244.2 147 89.1
arahy.Tifrunner.gnm1.ann1.I4ZC3D Arachis hypogaea HOM05D006604 ORTHO05D007974 6.4e-49 198.4 133 80.5
SHI36697 Sapria himalayana HOM05D006604 ORTHO05D007974 3.3e-45 186.0 134 79.1
SHI50562 Sapria himalayana HOM05D006604 ORTHO05D007974 3.3e-45 186.0 134 79.1
SHI36367 Sapria himalayana HOM05D006604 ORTHO05D007974 1.6e-44 183.7 132 79.5
ClCG00G004290 Citrullus lanatus HOM05D006604 ORTHO05D007974 8.1e-44 181.4 166 65.1
Potri.014G168000 Populus trichocarpa HOM05D006604 ORTHO05D007974 3.1e-43 179.5 121 79.3
EL10Ac2g04656 Beta vulgaris HOM05D001314 ORTHO05D001165 1.2e-42 177.6 103 88.3
Nitab4.5_0002418g0200 Nicotiana tabacum HOM05D006604 ORTHO05D007974 3.4e-42 176.0 157 66.2
SMO053G0007 Selaginella moellendorffii HOM05D006604 ORTHO05D007974 4.5e-42 175.6 232 51.3
SHI37564 Sapria himalayana HOM05D006604 ORTHO05D007974 5.8e-42 175.3 134 76.9
SHI53009 Sapria himalayana HOM05D006604 ORTHO05D007974 5.5e-40 168.7 128 76.6
Nitab4.5_0002404g0030 Nicotiana tabacum HOM05D006604 ORTHO05D007974 1.3e-38 164.1 120 75.0
Lj2P1232T107 Lonicera japonica HOM05D006604 ORTHO05D007974 2.5e-37 159.8 239 46.9
SHI35295 Sapria himalayana HOM05D006604 ORTHO05D007974 9.6e-37 157.9 92 87.0
SHI35759 Sapria himalayana HOM05D006604 ORTHO05D007974 1.4e-35 154.1 91 85.7
CARHR288250 Cardamine hirsuta HOM05D006604 ORTHO05D007974 2.0e-34 150.2 91 90.1
Os12g0424180 Oryza sativa ssp. japonica HOM05D006604 ORTHO05D007974 2.0e-34 150.2 111 73.0
GSVIVG01023423001 Vitis vinifera HOM05D006604 ORTHO05D007974 7.6e-34 148.3 90 85.6
arahy.Tifrunner.gnm1.ann1.NC5V37 Arachis hypogaea HOM05D006604 ORTHO05D007974 1.0e-33 147.9 94 78.7
SHI35478 Sapria himalayana HOM05D006604 ORTHO05D007974 1.7e-33 147.1 91 84.6
DCAR_031658 Daucus carota HOM05D006604 ORTHO05D007974 4.9e-33 145.6 91 84.6
SHI28635 Sapria himalayana HOM05D006604 ORTHO05D007974 1.1e-32 144.4 147 62.6
BolC1t03444H Brassica oleracea HOM05D006604 ORTHO05D007974 2.5e-32 143.3 88 80.7
unitig_87.g28014 Utricularia gibba HOM05D006604 ORTHO05D007974 6.0e-31 138.7 78 88.5
Peaxi162Scf00000g01811 Petunia axillaris HOM05D006604 ORTHO05D007974 1.5e-29 134.0 193 50.3
ClCG06G009210 Citrullus lanatus HOM05D006604 ORTHO05D007974 2.5e-29 133.3 157 54.8
ATR0392G001 Amborella trichopoda HOM05D006604 ORTHO05D007974 3.7e-28 129.4 101 71.3
SHI33922 Sapria himalayana HOM05D006604 ORTHO05D007974 8.2e-28 128.3 151 55.0
MELO3C034885.2 Cucumis melo HOM05D006604 ORTHO05D007974 2.2e-25 120.2 141 53.2
arahy.Tifrunner.gnm1.ann1.KE43QT Arachis hypogaea HOM05D002660 ORTHO05D007974 3.8e-25 119.4 120 60.0
arahy.Tifrunner.gnm1.ann1.QE4HQU Arachis hypogaea HOM05D002660 ORTHO05D007974 3.8e-25 119.4 120 60.0
SHI51349 Sapria himalayana HOM05D006604 ORTHO05D007974 5.0e-25 119.0 72 80.6
MD15G1429600 Malus domestica HOM05D006604 ORTHO05D007974 2.5e-24 116.7 81 77.8
Aa31csc464G30 Aethionema arabicum HOM05D006604 ORTHO05D007974 4.2e-24 115.9 72 81.9
Mapoly1449s0001 Marchantia polymorpha HOM05D006604 ORTHO05D007974 9.3e-24 114.8 189 34.9
SHI54304 Sapria himalayana HOM05D006604 ORTHO05D007974 9.3e-24 114.8 70 84.3
Glyma.01G103450 Glycine max HOM05D006604 ORTHO05D007974 1.2e-23 114.4 73 82.2
Glyma.16G133700 Glycine max HOM05D006604 ORTHO05D007974 2.7e-23 113.2 70 82.9
LjContig00439g0025482 Lotus japonicus HOM05D006604 ORTHO05D007974 3.6e-23 112.8 70 84.3
RcHm_v2.0_Chr7g0231141 Rosa chinensis HOM05D006604 ORTHO05D007974 3.9e-22 109.4 69 82.6
Nn7g37740 Nelumbo nucifera HOM05D006604 ORTHO05D007974 1.5e-21 107.5 67 85.1
Nn6g31985 Nelumbo nucifera HOM05D006604 ORTHO05D007974 3.3e-21 106.3 63 87.3
SHI01304 Sapria himalayana HOM05D006604 ORTHO05D007974 1.7e-20 104.0 87 67.8
MELO3C027032.2 Cucumis melo HOM05D006604 ORTHO05D007974 2.8e-20 103.2 69 78.3
Nitab4.5_0005246g0050 Nicotiana tabacum HOM05D006604 ORTHO05D007974 6.3e-20 102.1 159 45.3
GSVIVG01035307001 Vitis vinifera HOM05D000029 ORTHO05D001072 1.1e-19 101.3 103 61.2
SHI35935 Sapria himalayana HOM05D006604 ORTHO05D007974 1.8e-19 100.5 64 78.1
C01p34770 Brassica napus HOM05D013555 ORTHO05D016062 9.1e-19 98.2 59 78.0
C01p34870 Brassica napus HOM05D013555 ORTHO05D016062 2.0e-18 97.1 58 79.3
MELO3C027524.2 Cucumis melo HOM05D006604 ORTHO05D007974 1.4e-16 90.9 62 75.8
Nn2g15525 Nelumbo nucifera HOM05D006604 ORTHO05D007974 4.2e-16 89.4 57 84.2
TAR022G0004 Trochodendron aralioides HOM05D004537 ORTHO05D005492 5.5e-16 89.0 146 43.8
arahy.Tifrunner.gnm1.ann1.8GMV2Y Arachis hypogaea HOM05D003517 ORTHO05D009794 2.1e-15 87.0 134 45.5
Cre01.g018800 Chlamydomonas reinhardtii HOM05D006604 ORTHO05D007974 2.1e-15 87.0 162 38.3
PSO541G5787 Papaver somniferum HOM05D000219 ORTHO05D004649 2.7e-15 86.7 51 90.2
MELO3C029409.2 Cucumis melo HOM05D006604 ORTHO05D007974 4.7e-15 85.9 61 75.4
SHI27524 Sapria himalayana HOM05D006604 ORTHO05D007974 1.5e-13 80.9 60 70.0
SHI01303 Sapria himalayana HOM05D006604 ORTHO05D007974 2.0e-13 80.5 57 75.4
Medtr0082s0160 Medicago truncatula HOM05D005794 ORTHO05D006814 9.7e-13 78.2 46 82.6
SHI37140 Sapria himalayana HOM05D006604 ORTHO05D007974 4.8e-12 75.9 45 80.0
Nitab4.5_0002418g0090 Nicotiana tabacum HOM05D006604 ORTHO05D007974 8.2e-12 75.1 44 84.1
SHI12109 Sapria himalayana HOM05D006604 ORTHO05D007974 8.2e-12 75.1 46 80.4
Eucgr.D01303 Eucalyptus grandis HOM05D006604 ORTHO05D007974 3.1e-11 73.2 82 51.2
SHI36463 Sapria himalayana HOM05D006604 ORTHO05D007974 6.9e-11 72.0 43 81.4
SHI55017 Sapria himalayana HOM05D006604 ORTHO05D007974 9.1e-11 71.6 45 84.4
ECA039G0009 Erigeron canadensis HOM05D008105 ORTHO05D010309 1.2e-10 71.2 38 97.4
SHI31173 Sapria himalayana HOM05D006604 ORTHO05D007974 7.7e-10 68.6 168 35.1
TPR.G6244 Trifolium pratense HOM05D008992 ORTHO05D007974 7.7e-10 68.6 45 80.0
Medtr8g077470 Medicago truncatula HOM05D006604 ORTHO05D007974 1.3e-09 67.8 48 70.8
ECA003G0002 Erigeron canadensis HOM05D006604 ORTHO05D007974 1.7e-09 67.4 36 97.2
SHI12053 Sapria himalayana HOM05D006604 ORTHO05D007974 4.7e-07 59.3 42 76.2
Medtr0248s0030 Medicago truncatula HOM05D006604 ORTHO05D007974 6.1e-07 58.9 31 96.8
SHI36366 Sapria himalayana HOM05D006604 ORTHO05D007974 1.0e-06 58.2 32 90.6
SHI37563 Sapria himalayana HOM05D006604 ORTHO05D007974 5.2e-06 55.8 30 90.0
BcaC02g07607 Brassica carinata HOM05D001561 ORTHO05D012158 8.8e-06 55.1 32 75.0
ClCG06G014670 Citrullus lanatus HOM05D006604 ORTHO05D007974 8.8e-06 55.1 35 80.0


User provided reference genes

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