Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT16G0040 Cannabis sativa HOM05D003517 ORTHO05D009794 4.4e-107 391.3 206 100.0
ATMG00270 Arabidopsis thaliana HOM05D003517 ORTHO05D009794 1.9e-105 386.0 206 98.5
BNapus_Darmor_BZH_scaffold_234p00290 Brassica napus HOM05D003517 ORTHO05D009794 1.9e-105 386.0 206 98.5
BolSC28t60338H Brassica oleracea HOM05D003517 ORTHO05D009794 1.9e-105 386.0 206 98.5
BolSC28t60397H Brassica oleracea HOM05D003517 ORTHO05D009794 1.9e-105 386.0 206 98.5
BraSC77t46643Z Brassica rapa HOM05D003517 ORTHO05D009794 1.9e-105 386.0 206 98.5
CARHR282730 Cardamine hirsuta HOM05D003517 ORTHO05D009794 1.9e-105 386.0 206 98.5
RcHm_v2.0_MTg0498991 Rosa chinensis HOM05D003517 ORTHO05D009794 3.5e-104 381.7 206 97.6
Lj5g0026865 Lotus japonicus HOM05D003517 ORTHO05D009794 2.3e-103 379.0 204 97.5
LjContig00439g0001390 Lotus japonicus HOM05D003517 ORTHO05D009794 2.3e-103 379.0 204 97.5
LjContig00446g0016600 Lotus japonicus HOM05D003517 ORTHO05D009794 2.3e-103 379.0 204 97.5
Lalb_Chr00c21g0406031 Lupinus albus HOM05D003517 ORTHO05D009794 3.0e-103 378.6 206 96.6
Lalb_Chr00c39g0409031 Lupinus albus HOM05D003517 ORTHO05D009794 3.0e-103 378.6 206 96.6
Lalb_Chr00c39g0409211 Lupinus albus HOM05D003517 ORTHO05D009794 3.0e-103 378.6 206 96.6
Lalb_Chr00c51g0413121 Lupinus albus HOM05D003517 ORTHO05D009794 3.0e-103 378.6 206 96.6
Lj2P1233T102 Lonicera japonica HOM05D003517 ORTHO05D009794 7.3e-102 374.0 206 96.1
Lj2P1236T75 Lonicera japonica HOM05D003517 ORTHO05D009794 7.3e-102 374.0 206 96.1
Sed0011263 Sechium edule HOM05D003517 ORTHO05D009794 1.6e-101 372.9 202 97.0
Sed0015872 Sechium edule HOM05D003517 ORTHO05D009794 1.6e-101 372.9 202 97.0
Glyma.08G301000 Glycine max HOM05D003517 ORTHO05D009794 1.4e-100 369.8 200 97.5
Sp3g25610 Schrenkiella parvula HOM05D003517 ORTHO05D009794 5.3e-100 367.9 198 98.0
Peaxi162Scf00456g00029 Petunia axillaris HOM05D003517 ORTHO05D009794 6.9e-100 367.5 203 95.6
Solyc00g021630.1 Solanum lycopersicum HOM05D003517 ORTHO05D009794 6.9e-100 367.5 203 95.6
Aqoxy38s018 Aquilegia oxysepala HOM05D003517 ORTHO05D009794 1.2e-99 366.7 206 94.7
arahy.Tifrunner.gnm1.ann1.8GMV2Y Arachis hypogaea HOM05D003517 ORTHO05D009794 1.2e-99 366.7 200 96.5
Nn003s41395 Nelumbo nucifera HOM05D003517 ORTHO05D009794 2.6e-99 365.5 203 95.6
Nn1g09965 Nelumbo nucifera HOM05D003517 ORTHO05D009794 2.6e-99 365.5 203 95.6
Nn1g10124 Nelumbo nucifera HOM05D003517 ORTHO05D009794 2.6e-99 365.5 203 95.6
Gohir.A03G108600 Gossypium hirsutum HOM05D003517 ORTHO05D009794 4.5e-99 364.8 205 95.6
Peaxi162Scf00456g00032 Petunia axillaris HOM05D003517 ORTHO05D009794 9.9e-99 363.6 203 94.6
Gorai.001G168000 Gossypium raimondii HOM05D003517 ORTHO05D009794 3.8e-98 361.7 205 95.1
DCAR_032460 Daucus carota HOM05D003517 ORTHO05D009794 1.1e-97 360.1 204 94.1
SHI35306 Sapria himalayana HOM05D003517 ORTHO05D009794 4.2e-97 358.2 207 91.8
SHI49089 Sapria himalayana HOM05D003517 ORTHO05D009794 4.2e-97 358.2 207 91.8
HanXRQChr00c0234g0572741 Helianthus annuus HOM05D003517 ORTHO05D009794 7.1e-97 357.5 202 94.6
HanXRQMTg0579471 Helianthus annuus HOM05D003517 ORTHO05D009794 7.1e-97 357.5 202 94.6
SHI53309 Sapria himalayana HOM05D003517 ORTHO05D009794 1.2e-96 356.7 207 91.3
Nitab4.5_0000172g1090 Nicotiana tabacum HOM05D003517 ORTHO05D009794 2.0e-91 339.3 203 88.2
CSS0025973 Camellia sinensis var. sinensis HOM05D003517 ORTHO05D009794 7.6e-91 337.4 183 96.7
CAN.G1.11 Capsicum annuum HOM05D003517 ORTHO05D009794 1.7e-90 336.3 203 87.7
Nitab4.5_0000172g0300 Nicotiana tabacum HOM05D003517 ORTHO05D009794 2.2e-90 335.9 203 87.2
MBI05_g05356_MAGBIO Magnolia biondii HOM05D003517 ORTHO05D009794 3.2e-89 332.0 195 90.8
Nitab4.5_0003784g0040 Nicotiana tabacum HOM05D003517 ORTHO05D009798 1.0e-87 327.0 203 85.7
HanXRQChr02g0049481 Helianthus annuus HOM05D003517 ORTHO05D009794 1.5e-86 323.2 187 92.0
HanXRQChr01g0013411 Helianthus annuus HOM05D003517 ORTHO05D009794 1.8e-84 316.2 176 94.9
Gohir.A08G086024 Gossypium hirsutum HOM05D003517 ORTHO05D009794 4.0e-84 315.1 204 83.8
LjContig00315g0004708 Lotus japonicus HOM05D003517 ORTHO05D009794 1.3e-82 310.1 197 85.8
arahy.Tifrunner.gnm1.ann1.N584HR Arachis hypogaea HOM05D003517 ORTHO05D009794 7.1e-81 304.3 200 84.0
Nitab4.5_0010559g0050 Nicotiana tabacum HOM05D003517 ORTHO05D009798 1.8e-79 299.7 203 82.3
SabraMtG0003300 Salix brachista HOM05D003517 ORTHO05D009794 1.6e-77 293.1 157 96.2
Nitab4.5_0000172g0410 Nicotiana tabacum HOM05D003517 ORTHO05D009794 3.2e-73 278.9 203 78.3
unitig_0.g2040 Utricularia gibba HOM05D003517 ORTHO05D009794 6.3e-69 264.6 155 90.3
Nitab4.5_0003945g0090 Nicotiana tabacum HOM05D003517 ORTHO05D009794 5.3e-68 261.5 176 81.8
CDE02G3221 Ceratophyllum demersum HOM05D003517 ORTHO05D009794 9.1e-68 260.8 148 92.6
HanXRQChr09g0237761 Helianthus annuus HOM05D003517 ORTHO05D009794 1.7e-66 256.5 140 95.0
CsaV3_UNG208670 Cucumis sativus L. HOM05D003517 ORTHO05D009794 7.4e-62 241.1 130 96.2
RhsimMtG0007100 Rhododendron simsii HOM05D003517 ORTHO05D009794 1.4e-60 236.9 130 96.2
Nitab4.5_0001152g0960 Nicotiana tabacum HOM05D003517 ORTHO05D009794 5.9e-59 231.5 149 81.9
TPR.G40594 Trifolium pratense HOM05D003517 ORTHO05D009794 7.7e-59 231.1 124 98.4
HanXRQChr05g0138851 Helianthus annuus HOM05D003517 ORTHO05D009794 7.0e-52 208.0 117 92.3
Pp3c12_12240 Physcomitrium patens HOM05D003517 ORTHO05D009794 7.0e-52 208.0 193 63.7
Sp5g20260 Schrenkiella parvula HOM05D003517 ORTHO05D009794 3.5e-51 205.7 197 65.0
BraSC159t45725Z Brassica rapa HOM05D003517 ORTHO05D009794 1.4e-47 193.7 103 99.0
Aa31csc798G10 Aethionema arabicum HOM05D003517 ORTHO05D009794 7.0e-44 181.4 115 85.2
Lj2P92T86 Lonicera japonica HOM05D003517 ORTHO05D009794 2.7e-43 179.5 100 92.0
Ca_03783_v3 Cicer arietinum L. HOM05D009973 ORTHO05D009794 1.3e-37 160.6 89 98.9
Nitab4.5_0001152g0030 Nicotiana tabacum HOM05D003517 ORTHO05D009794 1.7e-37 160.2 184 57.6
Actinidia34878 Actinidia chinensis HOM05D003517 ORTHO05D009794 4.8e-37 158.7 95 92.6
VMungo0985G0003 Vigna mungo HOM05D003517 ORTHO05D009794 4.8e-37 158.7 88 97.7
Thhalv10029192m.g Eutrema salsugineum HOM05D003517 ORTHO05D009794 7.7e-35 151.4 84 94.0
Nitab4.5_0001127g0280 Nicotiana tabacum HOM05D003517 ORTHO05D009794 8.3e-29 131.3 175 53.1
TPR.G39738 Trifolium pratense HOM05D003517 ORTHO05D009794 1.8e-28 130.2 69 98.6
CiPaw.05G081600 Carya illinoinensis HOM05D003517 ORTHO05D009794 7.8e-27 124.8 93 74.2
Solyc10g045730.1 Solanum lycopersicum HOM05D003517 ORTHO05D009794 7.3e-25 118.2 131 58.8
Nitab4.5_0001152g0550 Nicotiana tabacum HOM05D003517 ORTHO05D009794 4.4e-22 109.0 64 81.2
Lsat_1_v5_gn_5_95761 Lactuca sativa HOM05D002069 ORTHO05D009794 2.2e-21 106.7 57 86.0
Solyc11g030930.3 Solanum lycopersicum HOM05D003517 ORTHO05D009794 6.4e-21 105.1 61 86.9
Aqoxy12s041 Aquilegia oxysepala HOM05D003517 ORTHO05D009794 1.6e-19 100.5 71 84.5
HanXRQChr05g0138841 Helianthus annuus HOM05D003517 ORTHO05D009794 5.6e-17 92.0 57 87.7
SGA_v2.0_scaffold400G50848 Striga asiatica HOM05D003517 ORTHO05D009794 1.6e-16 90.5 54 87.0
Nitab4.5_0001152g0290 Nicotiana tabacum HOM05D003517 ORTHO05D009794 2.8e-16 89.7 63 79.4
SalBow1G3342 Salvia bowleyana HOM05D002965 ORTHO05D010536 5.8e-14 82.0 44 97.7
Psat0s1454g0040 Pisum sativum HOM05D003517 ORTHO05D009794 9.8e-14 81.3 89 61.8
HanXRQChr05g0138831 Helianthus annuus HOM05D003517 ORTHO05D009794 2.7e-11 73.2 37 94.6
HanXRQChr05g0138811 Helianthus annuus HOM05D003517 ORTHO05D009794 2.3e-10 70.1 37 91.9
HanXRQChr05g0138821 Helianthus annuus HOM05D003517 ORTHO05D009794 2.3e-10 70.1 37 91.9
Lj2C1230G62 Lonicera japonica HOM05D014754 ORTHO05D009794 2.1e-08 63.5 40 85.0
CARHR282960 Cardamine hirsuta HOM05D014754 ORTHO05D017434 1.4e-07 60.8 34 94.1
AT2G07718 Arabidopsis thaliana HOM05D014754 ORTHO05D017434 6.8e-07 58.5 72 52.8
ATMG00590 Arabidopsis thaliana HOM05D014754 ORTHO05D017434 6.8e-07 58.5 72 52.8


User provided reference genes

Program Settings