Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT16G0035 Cannabis sativa HOM05D008204 ORTHO05D010378 1.9e-42 175.6 101 100.0
Sed0011989 Sechium edule HOM05D008204 ORTHO05D010378 1.9e-42 175.6 101 100.0
Sed0024014 Sechium edule HOM05D008204 ORTHO05D010378 1.9e-42 175.6 101 100.0
Potri.007G061661 Populus trichocarpa HOM05D008204 ORTHO05D010378 5.1e-40 167.5 101 96.0
Potri.007G062622 Populus trichocarpa HOM05D008204 ORTHO05D010378 5.1e-40 167.5 101 96.0
BraSC48t46233Z Brassica rapa HOM05D008204 ORTHO05D010378 7.2e-34 147.1 101 89.1
CARHR283010 Cardamine hirsuta HOM05D008204 ORTHO05D010378 7.2e-34 147.1 101 89.1
Thhalv10023053m.g Eutrema salsugineum HOM05D008204 ORTHO05D010378 2.1e-33 145.6 101 88.1
TPR.G39971 Trifolium pratense HOM05D008204 ORTHO05D010378 4.6e-33 144.4 100 89.0
C01p34800 Brassica napus HOM05D008204 ORTHO05D010378 6.1e-33 144.1 101 87.1
BolC1t03448H Brassica oleracea HOM05D008204 ORTHO05D010378 6.1e-33 144.1 101 87.1
ATMG00650 Arabidopsis thaliana HOM05D008204 ORTHO05D010378 1.0e-32 143.3 101 88.1
CAN.G2446.2 Capsicum annuum HOM05D008204 ORTHO05D010378 6.7e-32 140.6 101 87.1
CAN.G2792.2 Capsicum annuum HOM05D008204 ORTHO05D010378 6.7e-32 140.6 101 87.1
SabraMtG0004200 Salix brachista HOM05D007533 ORTHO05D009622 2.5e-31 138.7 85 95.3
Ah.10g028140 Amaranthus hybridus HOM05D008204 ORTHO05D010378 5.9e-28 127.5 84 92.9
BraSC48t46321Z Brassica rapa HOM05D008204 ORTHO05D010378 5.0e-27 124.4 88 87.5
Lalb_Chr00c21g0405851 Lupinus albus HOM05D008204 ORTHO05D010378 5.0e-27 124.4 91 87.9
Lalb_Chr00c24g0407001 Lupinus albus HOM05D008204 ORTHO05D010378 5.0e-27 124.4 91 87.9
Glyma.17G186100 Glycine max HOM05D008204 ORTHO05D010378 6.5e-27 124.0 91 86.8
RcHm_v2.0_MTg0498341 Rosa chinensis HOM05D008204 ORTHO05D010378 5.5e-26 120.9 91 86.8
Nn1g09977 Nelumbo nucifera HOM05D008204 ORTHO05D010378 7.2e-26 120.6 90 86.7
Nn1g10041 Nelumbo nucifera HOM05D008204 ORTHO05D010378 7.2e-26 120.6 90 86.7
arahy.Tifrunner.gnm1.ann1.13YUNC Arachis hypogaea HOM05D008204 ORTHO05D010378 1.2e-25 119.8 85 87.1
arahy.Tifrunner.gnm1.ann1.CN6S56 Arachis hypogaea HOM05D008204 ORTHO05D010378 1.2e-25 119.8 85 87.1
arahy.Tifrunner.gnm1.ann1.TNUC9A Arachis hypogaea HOM05D008204 ORTHO05D010378 1.2e-25 119.8 85 87.1
arahy.Tifrunner.gnm1.ann1.4CE1ET Arachis hypogaea HOM05D008204 ORTHO05D010378 1.6e-25 119.4 84 88.1
LjContig00439g0017375 Lotus japonicus HOM05D008204 ORTHO05D010378 1.6e-25 119.4 84 88.1
DCAR_032454 Daucus carota HOM05D008204 ORTHO05D010378 2.7e-25 118.6 91 85.7
HanXRQChr16g0504421 Helianthus annuus HOM05D008204 ORTHO05D010378 2.7e-25 118.6 91 85.7
HanXRQMTg0579141 Helianthus annuus HOM05D008204 ORTHO05D010378 2.7e-25 118.6 91 85.7
Aqoxy1G02968 Aquilegia oxysepala HOM05D008204 ORTHO05D010378 4.6e-25 117.9 88 85.2
Aqoxy23s009 Aquilegia oxysepala HOM05D008204 ORTHO05D010378 4.6e-25 117.9 88 85.2
Ca_07436_v3 Cicer arietinum L. HOM05D004537 ORTHO05D005492 3.9e-24 114.8 85 84.7
Ca_07440_v3 Cicer arietinum L. HOM05D007194 ORTHO05D009182 3.9e-24 114.8 85 84.7
Aqoxy12s023 Aquilegia oxysepala HOM05D008204 ORTHO05D010378 5.1e-24 114.4 84 86.9
Dinv06665 Davidia involucrata HOM05D008204 ORTHO05D010378 6.7e-24 114.0 85 84.7
Lsat_1_v5_gn_0_35040 Lactuca sativa HOM05D008204 ORTHO05D010378 1.1e-23 113.2 83 86.7
SEGI_24171 Sequoiadendron giganteum HOM05D008204 ORTHO05D010378 7.4e-23 110.5 100 73.0
CDE02G0407 Ceratophyllum demersum HOM05D008466 ORTHO05D010817 9.7e-23 110.2 87 82.8
Gorai.001G160700 Gossypium raimondii HOM05D008204 ORTHO05D010378 2.8e-22 108.6 81 87.7
Nitab4.5_0012599g0060 Nicotiana tabacum HOM05D008204 ORTHO05D010378 1.4e-21 106.3 86 80.2
Nitab4.5_0010333g0030 Nicotiana tabacum HOM05D008204 ORTHO05D010378 1.8e-21 105.9 85 80.0
HanXRQChr07g0188981 Helianthus annuus HOM05D008204 ORTHO05D010378 2.4e-21 105.5 88 80.7
Ah.02g111570 Amaranthus hybridus HOM05D007533 ORTHO05D009622 3.4e-20 101.7 63 95.2
Lsat_1_v5_gn_5_43061 Lactuca sativa HOM05D008204 ORTHO05D010378 1.0e-19 100.1 70 87.1
Aa31csc1168G40 Aethionema arabicum HOM05D008204 ORTHO05D010378 1.7e-19 99.4 64 92.2
Peaxi162Scf00651g00636 Petunia axillaris HOM05D007533 ORTHO05D009622 3.8e-19 98.2 70 87.1
AL6G41410 Arabidopsis lyrata HOM05D007533 ORTHO05D009622 8.5e-19 97.1 72 86.1
FAN20G2339 Fragaria x ananassa HOM05D007533 ORTHO05D010378 1.1e-18 96.7 70 85.7
RhsimMtG0003100 Rhododendron simsii HOM05D007194 ORTHO05D009182 1.4e-18 96.3 74 85.1
RhsimMtG0007900 Rhododendron simsii HOM05D007194 ORTHO05D009182 1.4e-18 96.3 74 85.1
ClCG06G013560 Citrullus lanatus HOM05D005029 ORTHO05D006052 1.9e-18 95.9 87 72.4
SGA_v2.0_scaffold255G45496 Striga asiatica HOM05D001560 ORTHO05D003613 7.9e-17 90.5 70 84.3
SHI41393 Sapria himalayana HOM05D008204 ORTHO05D010378 1.4e-16 89.7 63 82.5
SHI54418 Sapria himalayana HOM05D008204 ORTHO05D010378 2.6e-15 85.5 71 81.7
HanXRQChr11g0327851 Helianthus annuus HOM05D008204 ORTHO05D010378 1.4e-13 79.7 69 79.7
SHI51809 Sapria himalayana HOM05D008204 ORTHO05D010378 1.2e-12 76.6 62 82.3
BraSC54t46364Z Brassica rapa HOM05D008204 ORTHO05D010378 4.5e-12 74.7 46 93.5
BolSC28t60309H Brassica oleracea HOM05D007533 ORTHO05D009622 5.9e-12 74.3 45 93.3
BolSC28t60365H Brassica oleracea HOM05D007533 ORTHO05D009622 5.9e-12 74.3 45 93.3
PSO764G0230 Papaver somniferum HOM05D017042 ORTHO05D018469 1.0e-11 73.6 55 78.2
Mapoly0002s0163 Marchantia polymorpha HOM05D008204 ORTHO05D010378 1.3e-11 73.2 45 91.1
Peaxi162Scf01098g00002 Petunia axillaris HOM05D007533 ORTHO05D009622 2.2e-11 72.4 63 77.8
unitig_87.g27951 Utricularia gibba HOM05D008204 ORTHO05D010378 8.5e-11 70.5 45 91.1
SHI19534 Sapria himalayana HOM05D007533 ORTHO05D010378 2.5e-10 68.9 69 68.1
HanXRQChr07g0189011 Helianthus annuus HOM05D008204 ORTHO05D010378 5.5e-10 67.8 54 81.5
SEGI_26273 Sequoiadendron giganteum HOM05D008204 ORTHO05D010378 3.6e-09 65.1 67 68.7
Cre09.g402552 Chlamydomonas reinhardtii HOM05D008204 ORTHO05D010378 9.7e-07 57.0 88 39.8
Nitab4.5_0000172g1780 Nicotiana tabacum HOM05D008204 ORTHO05D010378 4.8e-06 54.7 43 76.7
Nitab4.5_0010033g0020 Nicotiana tabacum HOM05D007533 ORTHO05D009622 4.8e-06 54.7 54 66.7
SHI23927 Sapria himalayana HOM05D007533 ORTHO05D009622 4.8e-06 54.7 50 70.0


User provided reference genes

Program Settings