Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT16G0023 Cannabis sativa HOM05D006320 ORTHO05D007069 3.6e-62 241.5 130 100.0
CANSAT21G1924 Cannabis sativa HOM05D006320 ORTHO05D007069 9.5e-31 137.1 80 96.2
RhsimMtG0004200 Rhododendron simsii HOM05D006320 ORTHO05D007069 1.4e-29 133.3 80 93.8
ECA041G0001 Erigeron canadensis HOM05D001750 ORTHO05D001825 4.0e-29 131.7 77 96.1
ECA234G4202 Erigeron canadensis HOM05D006320 ORTHO05D007069 4.0e-29 131.7 77 96.1
HanXRQMTg0579361 Helianthus annuus HOM05D001750 ORTHO05D001825 4.0e-29 131.7 77 96.1
Lsat_1_v5_gn_8_111781 Lactuca sativa HOM05D006320 ORTHO05D007069 4.0e-29 131.7 77 96.1
Dinv06672 Davidia involucrata HOM05D001750 ORTHO05D001825 1.2e-28 130.2 79 92.4
Dinv18904 Davidia involucrata HOM05D001750 ORTHO05D001825 1.2e-28 130.2 79 92.4
PGR028G0009 Punica granatum HOM05D006320 ORTHO05D007069 2.0e-28 129.4 79 92.4
CDE02G4101 Ceratophyllum demersum HOM05D006320 ORTHO05D007069 7.5e-28 127.5 99 76.8
CsaV3_UNG209120 Cucumis sativus L. HOM05D006320 ORTHO05D007069 7.5e-28 127.5 85 88.2
Cfa022996 Carpinus fangiana HOM05D001750 ORTHO05D001825 1.7e-27 126.3 76 93.4
ECA039G0010 Erigeron canadensis HOM05D001750 ORTHO05D001825 2.2e-27 125.9 74 95.9
RcHm_v2.0_MTg0498361 Rosa chinensis HOM05D006320 ORTHO05D007069 2.2e-27 125.9 75 94.7
Hma1.2p1_1191F.1_g265490 Hydrangea macrophylla HOM05D006320 ORTHO05D007069 1.9e-26 122.9 74 93.2
Dinv06715 Davidia involucrata HOM05D006320 ORTHO05D007069 3.2e-26 122.1 75 90.7
AL5G20340 Arabidopsis lyrata HOM05D006320 ORTHO05D007069 4.1e-26 121.7 74 93.2
AT2G07671 Arabidopsis thaliana HOM05D006320 ORTHO05D007069 4.1e-26 121.7 74 93.2
ATMG01080 Arabidopsis thaliana HOM05D006320 ORTHO05D007069 4.1e-26 121.7 74 93.2
BolSC28t60384H Brassica oleracea HOM05D006320 ORTHO05D007069 4.1e-26 121.7 74 93.2
BolSC28t60392H Brassica oleracea HOM05D006320 ORTHO05D007069 4.1e-26 121.7 74 93.2
BolSC28t60418H Brassica oleracea HOM05D006320 ORTHO05D007069 4.1e-26 121.7 74 93.2
BraSC224t45817Z Brassica rapa HOM05D006320 ORTHO05D007069 4.1e-26 121.7 74 93.2
Thhalv10023008m.g Eutrema salsugineum HOM05D006320 ORTHO05D007069 4.1e-26 121.7 74 93.2
CARHR287930 Cardamine hirsuta HOM05D006320 ORTHO05D007069 5.4e-26 121.3 74 91.9
GSVIVG01029662001 Vitis vinifera HOM05D006320 ORTHO05D007069 9.2e-26 120.6 72 94.4
Hund27557 Selenicereus undatus HOM05D001750 ORTHO05D007069 1.2e-25 120.2 76 90.8
Sed0021840 Sechium edule HOM05D006320 ORTHO05D007069 2.1e-25 119.4 79 87.3
AUR62042330 Chenopodium quinoa HOM05D006320 ORTHO05D007069 2.7e-25 119.0 71 95.8
C01p34910 Brassica napus HOM05D006320 ORTHO05D007069 4.6e-25 118.2 70 94.3
BolC1t03457H Brassica oleracea HOM05D006320 ORTHO05D007069 4.6e-25 118.2 70 94.3
Ah.10g028420 Amaranthus hybridus HOM05D006320 ORTHO05D007069 7.8e-25 117.5 76 88.2
LjContig00439g0017906 Lotus japonicus HOM05D006320 ORTHO05D007069 7.8e-25 117.5 74 90.5
LjContig00446g0026709 Lotus japonicus HOM05D006320 ORTHO05D007069 7.8e-25 117.5 74 90.5
SalBow1G1899 Salvia bowleyana HOM05D006320 ORTHO05D007069 7.8e-25 117.5 74 90.5
Gohir.D07G024400 Gossypium hirsutum HOM05D006320 ORTHO05D007069 1.0e-24 117.1 75 88.0
arahy.Tifrunner.gnm1.ann1.5U23EP Arachis hypogaea HOM05D006320 ORTHO05D007069 1.3e-24 116.7 74 90.5
arahy.Tifrunner.gnm1.ann1.YTYD5C Arachis hypogaea HOM05D006320 ORTHO05D007069 1.3e-24 116.7 74 90.5
Lalb_Chr00c24g0406831 Lupinus albus HOM05D006320 ORTHO05D007069 1.3e-24 116.7 74 90.5
Lalb_Chr11g0070071 Lupinus albus HOM05D006320 ORTHO05D007069 1.3e-24 116.7 74 90.5
Nitab4.5_0002326g0030 Nicotiana tabacum HOM05D006320 ORTHO05D007069 1.3e-24 116.7 75 88.0
Phvul.005G088454 Phaseolus vulgaris HOM05D006320 ORTHO05D007069 1.3e-24 116.7 74 90.5
Nitab4.5_0000172g0580 Nicotiana tabacum HOM05D006320 ORTHO05D007069 1.7e-24 116.3 75 88.0
Sc08g0004920 Simmondsia chinensis HOM05D006320 ORTHO05D007069 5.1e-24 114.8 77 85.7
C01p34830 Brassica napus HOM05D006320 ORTHO05D007069 6.6e-24 114.4 70 91.4
Aa31sc483G20 Aethionema arabicum HOM05D006320 ORTHO05D007069 8.6e-24 114.0 74 89.2
Aqoxy12s033 Aquilegia oxysepala HOM05D006320 ORTHO05D007069 2.5e-23 112.5 74 87.8
arahy.Tifrunner.gnm1.ann1.XSHW5Z Arachis hypogaea HOM05D006320 ORTHO05D007069 3.3e-23 112.1 68 92.6
SHI40315 Sapria himalayana HOM05D006320 ORTHO05D007069 4.3e-23 111.7 74 86.5
Phvul.011G124000 Phaseolus vulgaris HOM05D006320 ORTHO05D007069 5.6e-23 111.3 74 86.5
PGSC0003DMG400002202 Solanum tuberosum HOM05D006320 ORTHO05D007069 5.6e-23 111.3 68 92.6
SHI36586 Sapria himalayana HOM05D000743 ORTHO05D000580 1.2e-22 110.2 74 83.8
SHI36772 Sapria himalayana HOM05D000743 ORTHO05D000580 2.1e-22 109.4 81 77.8
SHI36783 Sapria himalayana HOM05D000743 ORTHO05D000580 2.1e-22 109.4 81 77.8
Sopen12g013690 Solanum pennellii HOM05D006320 ORTHO05D007069 2.8e-22 109.0 75 85.3
Lalb_Chr10g0093911 Lupinus albus HOM05D006320 ORTHO05D007069 1.4e-21 106.7 74 83.8
SHI46272 Sapria himalayana HOM05D000743 ORTHO05D000580 1.4e-21 106.7 74 81.1
CAN.G547.1 Capsicum annuum HOM05D006320 ORTHO05D007069 2.4e-21 105.9 66 90.9
SHI15099 Sapria himalayana HOM05D006320 ORTHO05D007069 3.1e-21 105.5 70 85.7
SHI36018 Sapria himalayana HOM05D000743 ORTHO05D000580 4.0e-21 105.1 74 81.1
SHI39988 Sapria himalayana HOM05D006320 ORTHO05D007069 6.8e-21 104.4 71 84.5
SHI54307 Sapria himalayana HOM05D006320 ORTHO05D007069 6.8e-21 104.4 71 84.5
Psat1g120760 Pisum sativum HOM05D012609 ORTHO05D007069 8.9e-21 104.0 67 88.1
SHI39753 Sapria himalayana HOM05D006320 ORTHO05D007069 8.9e-21 104.0 71 84.5
Nitab4.5_0001152g0710 Nicotiana tabacum HOM05D006320 ORTHO05D007069 1.2e-20 103.6 71 81.7
SHI35484 Sapria himalayana HOM05D006320 ORTHO05D007069 2.0e-20 102.8 71 84.5
SHI37011 Sapria himalayana HOM05D000743 ORTHO05D000580 2.0e-20 102.8 74 78.4
SHI38846 Sapria himalayana HOM05D006320 ORTHO05D007069 2.0e-20 102.8 71 81.7
CiPaw.06G021700 Carya illinoinensis HOM05D006320 ORTHO05D007069 2.6e-20 102.4 62 88.7
SHI48649 Sapria himalayana HOM05D006320 ORTHO05D007069 2.6e-20 102.4 71 83.1
SHI36936 Sapria himalayana HOM05D000743 ORTHO05D000580 3.4e-20 102.1 74 78.4
SGA_v2.0_scaffold255G45504 Striga asiatica HOM05D006320 ORTHO05D007069 3.4e-20 102.1 60 93.3
Cfa021370 Carpinus fangiana HOM05D002864 ORTHO05D008485 4.4e-20 101.7 64 85.9
Nitab4.5_0002418g0080 Nicotiana tabacum HOM05D006320 ORTHO05D007069 4.4e-20 101.7 78 73.1
SHI36381 Sapria himalayana HOM05D001560 ORTHO05D003613 4.4e-20 101.7 67 83.6
SHI35237 Sapria himalayana HOM05D006320 ORTHO05D007069 5.8e-20 101.3 71 81.7
SHI46360 Sapria himalayana HOM05D006320 ORTHO05D007069 5.8e-20 101.3 71 81.7
SHI53429 Sapria himalayana HOM05D006320 ORTHO05D007069 7.6e-20 100.9 71 83.1
SalBow6G3944 Salvia bowleyana HOM05D006320 ORTHO05D007069 9.9e-20 100.5 73 80.8
SHI34605 Sapria himalayana HOM05D001560 ORTHO05D003613 9.9e-20 100.5 73 79.5
SalBow8G4348 Salvia bowleyana HOM05D006320 ORTHO05D007069 1.3e-19 100.1 74 82.4
SHI35327 Sapria himalayana HOM05D001560 ORTHO05D003613 1.3e-19 100.1 71 78.9
Sc08g0004610 Simmondsia chinensis HOM05D006320 ORTHO05D007069 2.9e-19 99.0 77 77.9
Lsat_1_v5_gn_7_80061 Lactuca sativa HOM05D006320 ORTHO05D007069 3.8e-19 98.6 75 76.0
SHI34615 Sapria himalayana HOM05D000743 ORTHO05D000580 3.8e-19 98.6 74 75.7
SHI37852 Sapria himalayana HOM05D006320 ORTHO05D007069 6.4e-19 97.8 74 78.4
SHI52535 Sapria himalayana HOM05D006320 ORTHO05D007069 6.4e-19 97.8 65 83.1
SHI53047 Sapria himalayana HOM05D006320 ORTHO05D007069 6.4e-19 97.8 71 80.3
SHI34625 Sapria himalayana HOM05D000743 ORTHO05D000580 8.4e-19 97.4 68 80.9
SHI27343 Sapria himalayana HOM05D006320 ORTHO05D007069 1.1e-18 97.1 71 80.3
SHI37138 Sapria himalayana HOM05D006320 ORTHO05D007069 4.2e-18 95.1 65 81.5
SHI34993 Sapria himalayana HOM05D006320 ORTHO05D007069 7.1e-18 94.4 62 85.5
SHI35481 Sapria himalayana HOM05D000890 ORTHO05D007069 7.1e-18 94.4 57 91.2
SHI49662 Sapria himalayana HOM05D006320 ORTHO05D007069 7.1e-18 94.4 71 80.3
SHI50161 Sapria himalayana HOM05D006320 ORTHO05D007069 7.1e-18 94.4 71 78.9
SHI49633 Sapria himalayana HOM05D006320 ORTHO05D007069 9.2e-18 94.0 65 80.0
SEGI_10818 Sequoiadendron giganteum HOM05D006320 ORTHO05D007069 1.2e-17 93.6 76 76.3
SHI42051 Sapria himalayana HOM05D006320 ORTHO05D007069 1.6e-17 93.2 71 77.5
SHI50287 Sapria himalayana HOM05D006320 ORTHO05D007069 1.6e-17 93.2 60 85.0
SHI41242 Sapria himalayana HOM05D006320 ORTHO05D007069 3.5e-17 92.0 70 78.6
SHI51203 Sapria himalayana HOM05D006320 ORTHO05D007069 3.5e-17 92.0 59 86.4
SHI39076 Sapria himalayana HOM05D006320 ORTHO05D007069 6.0e-17 91.3 71 76.1
SHI39778 Sapria himalayana HOM05D006320 ORTHO05D007069 6.0e-17 91.3 62 83.9
SHI47782 Sapria himalayana HOM05D006320 ORTHO05D007069 7.8e-17 90.9 59 84.7
SHI38465 Sapria himalayana HOM05D000743 ORTHO05D000580 1.0e-16 90.5 56 87.5
SHI38101 Sapria himalayana HOM05D000743 ORTHO05D000580 1.3e-16 90.1 59 83.1
SHI47632 Sapria himalayana HOM05D006320 ORTHO05D007069 1.3e-16 90.1 59 84.7
CAN.G761.5 Capsicum annuum HOM05D012609 ORTHO05D007069 1.7e-16 89.7 58 87.9
SHI37168 Sapria himalayana HOM05D006320 ORTHO05D007069 3.0e-16 89.0 65 78.5
SHI36574 Sapria himalayana HOM05D006320 ORTHO05D007069 3.9e-16 88.6 62 82.3
SHI36370 Sapria himalayana HOM05D006320 ORTHO05D007069 6.6e-16 87.8 60 83.3
Nitab4.5_0000172g1200 Nicotiana tabacum HOM05D007924 ORTHO05D007069 1.9e-15 86.3 72 69.4
SHI40933 Sapria himalayana HOM05D000743 ORTHO05D000580 6.2e-14 81.3 61 75.4
SHI39478 Sapria himalayana HOM05D006320 ORTHO05D007069 9.0e-13 77.4 53 79.2
Nitab4.5_0005246g0040 Nicotiana tabacum HOM05D007924 ORTHO05D007069 1.5e-12 76.6 54 79.6
SHI41650 Sapria himalayana HOM05D000743 ORTHO05D000580 1.5e-12 76.6 54 79.6
Nitab4.5_0002404g0040 Nicotiana tabacum HOM05D006320 ORTHO05D007069 3.4e-12 75.5 81 60.5
Manes.04G128250 Manihot esculenta HOM05D006320 ORTHO05D007069 4.4e-12 75.1 46 91.3
CiPaw.04G019500 Carya illinoinensis HOM05D006320 ORTHO05D007069 5.8e-12 74.7 78 61.5
Cre17.g731950 Chlamydomonas reinhardtii HOM05D006320 ORTHO05D007069 7.6e-12 74.3 70 57.1
Cre17.g732000 Chlamydomonas reinhardtii HOM05D006320 ORTHO05D007069 7.6e-12 74.3 70 57.1
Gorai.001G163400 Gossypium raimondii HOM05D001750 ORTHO05D001825 7.6e-12 74.3 49 85.7
Peaxi162Scf00828g00512 Petunia axillaris HOM05D006320 ORTHO05D007069 9.9e-12 73.9 49 83.7
Peaxi162Scf03787g00001 Petunia axillaris HOM05D006320 ORTHO05D007069 9.9e-12 73.9 49 83.7
SHI25012 Sapria himalayana HOM05D006320 ORTHO05D007069 9.9e-12 73.9 74 60.8
Haze_26208 Corylus avellana HOM05D006320 ORTHO05D007069 1.3e-11 73.6 70 60.0
Haze_26209 Corylus avellana HOM05D006320 ORTHO05D007069 1.3e-11 73.6 70 60.0
SHI51623 Sapria himalayana HOM05D006320 ORTHO05D007069 2.9e-11 72.4 48 83.3
TAR022G0003 Trochodendron aralioides HOM05D006320 ORTHO05D007069 2.9e-11 72.4 70 61.4
ATMG00040 Arabidopsis thaliana HOM05D010793 ORTHO05D011945 6.4e-11 71.2 62 69.4
CARHR282610 Cardamine hirsuta HOM05D010793 ORTHO05D011945 6.4e-11 71.2 62 69.4
Nitab4.5_0000172g1000 Nicotiana tabacum HOM05D006320 ORTHO05D007069 6.4e-11 71.2 67 64.2
SHI36078 Sapria himalayana HOM05D000743 ORTHO05D007069 1.1e-10 70.5 49 79.6
C04p27420 Brassica napus HOM05D006320 ORTHO05D007069 1.4e-10 70.1 47 85.1
HanXRQChr08g0236091 Helianthus annuus HOM05D006320 ORTHO05D007069 1.9e-10 69.7 74 60.8
HanXRQMTg0579331 Helianthus annuus HOM05D006320 ORTHO05D007069 1.9e-10 69.7 74 60.8
Lsat_1_v5_gn_3_89840 Lactuca sativa HOM05D006320 ORTHO05D007069 4.2e-10 68.6 54 74.1
SHI39121 Sapria himalayana HOM05D000743 ORTHO05D000580 5.4e-10 68.2 49 75.5
HanXRQChr16g0504511 Helianthus annuus HOM05D006320 ORTHO05D007069 7.1e-10 67.8 70 61.4
EL10Ac6g14143 Beta vulgaris HOM05D010007 ORTHO05D007069 1.2e-09 67.0 42 88.1
Nitab4.5_0001152g0490 Nicotiana tabacum HOM05D006320 ORTHO05D007069 1.2e-09 67.0 67 64.2
Os01g0899275 Oryza sativa ssp. japonica HOM05D006320 ORTHO05D007069 3.5e-09 65.5 40 87.5
SHI43389 Sapria himalayana HOM05D000743 ORTHO05D000580 6.0e-09 64.7 63 63.5
Dinv06726 Davidia involucrata HOM05D006320 ORTHO05D007069 7.8e-09 64.3 36 94.4
Mapoly3785s0001 Marchantia polymorpha HOM05D006320 ORTHO05D007069 2.3e-08 62.8 71 53.5
Peaxi162Scf00446g00053 Petunia axillaris HOM05D006320 ORTHO05D007069 2.3e-08 62.8 33 97.0
Os01g0899350 Oryza sativa ssp. japonica HOM05D006320 ORTHO05D007069 3.9e-08 62.0 40 82.5
TAR424G0002 Trochodendron aralioides HOM05D006320 ORTHO05D007069 3.9e-08 62.0 58 60.3
Nitab4.5_0010033g0150 Nicotiana tabacum HOM05D006320 ORTHO05D007069 9.6e-07 57.4 42 76.2
Haze_27774 Corylus avellana HOM05D006320 ORTHO05D007069 1.3e-06 57.0 68 44.1
Haze_27775 Corylus avellana HOM05D006320 ORTHO05D007069 1.3e-06 57.0 68 44.1
CAN.G231.25 Capsicum annuum HOM05D006320 ORTHO05D007069 2.1e-06 56.2 53 62.3
Solyc10g049590.1 Solanum lycopersicum HOM05D000216 ORTHO05D007069 2.1e-06 56.2 41 80.5
Nitab4.5_0005853g0090 Nicotiana tabacum HOM05D006320 ORTHO05D007069 4.8e-06 55.1 46 65.2
Nitab4.5_0000859g0030 Nicotiana tabacum HOM05D006604 ORTHO05D007974 6.2e-06 54.7 36 83.3
SHI15041 Sapria himalayana HOM05D006320 ORTHO05D007069 8.1e-06 54.3 44 70.5


User provided reference genes

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