Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT16G0013 Cannabis sativa HOM05D007924 ORTHO05D010328 2.7e-88 328.6 160 100.0
Sed0020154 Sechium edule HOM05D007924 ORTHO05D010328 9.5e-81 303.5 160 91.9
GSVIVG01000955001 Vitis vinifera HOM05D007924 ORTHO05D010328 1.0e-79 300.1 160 91.2
Nn1g10039 Nelumbo nucifera HOM05D007924 ORTHO05D010328 1.8e-79 299.3 160 91.2
Lj2P1227T93 Lonicera japonica HOM05D007924 ORTHO05D010328 1.5e-78 296.2 160 90.6
CSS0018158 Camellia sinensis var. sinensis HOM05D007924 ORTHO05D010328 3.7e-77 291.6 160 88.8
HanXRQMTg0579161 Helianthus annuus HOM05D007924 ORTHO05D010328 3.7e-77 291.6 160 88.8
PGR028G0018 Punica granatum HOM05D007924 ORTHO05D010328 4.9e-77 291.2 158 89.9
SGA_v2.0_scaffold575G53004 Striga asiatica HOM05D007924 ORTHO05D010328 1.6e-75 286.2 160 85.6
RhsimMtG0003200 Rhododendron simsii HOM05D007924 ORTHO05D010328 2.7e-75 285.4 157 88.5
DCAR_032428 Daucus carota HOM05D007924 ORTHO05D010328 4.5e-75 284.6 160 86.9
Nn1g10153 Nelumbo nucifera HOM05D007924 ORTHO05D010328 5.0e-74 281.2 149 91.3
RcHm_v2.0_Chr6g0257961 Rosa chinensis HOM05D007924 ORTHO05D010328 1.1e-73 280.0 160 86.2
RcHm_v2.0_MTg0498901 Rosa chinensis HOM05D007924 ORTHO05D010328 1.1e-73 280.0 160 86.2
LjContig00315g0007302 Lotus japonicus HOM05D007924 ORTHO05D010328 4.3e-73 278.1 158 86.1
TPR.G7050 Trifolium pratense HOM05D007924 ORTHO05D010328 5.6e-73 277.7 158 86.1
CAN.G1180.17 Capsicum annuum HOM05D007924 ORTHO05D010328 7.3e-73 277.3 160 86.9
PGSC0003DMG400011350 Solanum tuberosum HOM05D007924 ORTHO05D010328 9.5e-73 276.9 160 86.2
Lalb_Chr00c24g0406701 Lupinus albus HOM05D007924 ORTHO05D010328 6.8e-71 270.8 158 84.8
Duzib116G0340 Durio zibethinus HOM05D007924 ORTHO05D010328 1.2e-70 270.0 157 85.4
BraSC48t46292Z Brassica rapa HOM05D007924 ORTHO05D010328 7.5e-70 267.3 160 85.0
BraSC48t46309Z Brassica rapa HOM05D007924 ORTHO05D010328 7.5e-70 267.3 160 85.0
SHI38116 Sapria himalayana HOM05D007924 ORTHO05D010328 1.3e-69 266.5 159 83.6
AT2G07707 Arabidopsis thaliana HOM05D007924 ORTHO05D010328 2.2e-69 265.8 160 84.4
ATMG00480 Arabidopsis thaliana HOM05D007924 ORTHO05D010328 2.2e-69 265.8 160 84.4
CARHR282860 Cardamine hirsuta HOM05D007924 ORTHO05D010328 2.2e-69 265.8 160 84.4
Thhalv10029138m.g Eutrema salsugineum HOM05D007924 ORTHO05D010328 1.2e-67 260.0 160 82.5
Lj3g0001131 Lotus japonicus HOM05D007924 ORTHO05D010328 1.3e-66 256.5 158 80.4
BolC1t03437H Brassica oleracea HOM05D007924 ORTHO05D010328 6.6e-66 254.2 160 81.9
Nitab4.5_0003945g0040 Nicotiana tabacum HOM05D007924 ORTHO05D010328 7.3e-65 250.8 146 84.9
CAN.G1001.34 Capsicum annuum HOM05D007924 ORTHO05D010328 3.7e-61 238.4 160 78.1
Lalb_Chr14g0363841 Lupinus albus HOM05D007924 ORTHO05D010328 8.6e-58 227.3 158 74.7
Nitab4.5_0000172g0710 Nicotiana tabacum HOM05D007924 ORTHO05D010328 1.9e-57 226.1 157 73.9
Ca_03774_v3 Cicer arietinum L. HOM05D007924 ORTHO05D010328 5.2e-55 218.0 126 84.9
HanXRQMTg0579521 Helianthus annuus HOM05D007924 ORTHO05D010328 4.1e-52 208.4 115 87.8
Gorai.001G164500 Gossypium raimondii HOM05D007924 ORTHO05D010328 4.6e-51 204.9 122 81.1
Nitab4.5_0000844g0160 Nicotiana tabacum HOM05D007924 ORTHO05D010328 8.6e-50 200.7 128 78.1
Nitab4.5_0028251g0010 Nicotiana tabacum HOM05D007924 ORTHO05D010328 7.3e-49 197.6 144 75.0
Oeu018666.1 Olea europaea HOM05D007924 ORTHO05D010328 1.7e-45 186.4 102 88.2
SabraMtG0001000 Salix brachista HOM05D007924 ORTHO05D010328 8.4e-45 184.1 119 77.3
RcHm_v2.0_MTg0499211 Rosa chinensis HOM05D007924 ORTHO05D010328 1.5e-41 173.3 100 83.0
CsaV3_5G016970 Cucumis sativus L. HOM05D007924 ORTHO05D010328 1.9e-41 172.9 114 77.2
HanXRQChr00c0055g0571411 Helianthus annuus HOM05D007924 ORTHO05D010328 2.2e-37 159.5 88 86.4
HanXRQChr09g0250631 Helianthus annuus HOM05D007924 ORTHO05D010328 1.0e-34 150.6 88 83.0
CsaV3_5G015830 Cucumis sativus L. HOM05D007924 ORTHO05D010328 1.7e-34 149.8 97 76.3
Nitab4.5_0003222g0040 Nicotiana tabacum HOM05D007924 ORTHO05D010328 3.3e-33 145.6 113 68.1
Cfa023001 Carpinus fangiana HOM05D007924 ORTHO05D010328 3.6e-32 142.1 71 93.0
BolSC28t60326H Brassica oleracea HOM05D007924 ORTHO05D011743 4.8e-32 141.7 83 80.7
BraSC159t45717Z Brassica rapa HOM05D007924 ORTHO05D010328 4.8e-32 141.7 83 80.7
HanXRQChr15g0468771 Helianthus annuus HOM05D007924 ORTHO05D010328 1.8e-31 139.8 80 82.5
arahy.Tifrunner.gnm1.ann1.I8TN6N Arachis hypogaea HOM05D007924 ORTHO05D010328 3.8e-29 132.1 80 81.2
CsaV3_UNG210380 Cucumis sativus L. HOM05D007924 ORTHO05D010328 4.9e-29 131.7 84 77.4
C01p34680 Brassica napus HOM05D007924 ORTHO05D010328 1.1e-28 130.6 83 75.9
Nitab4.5_0004553g0090 Nicotiana tabacum HOM05D007924 ORTHO05D010328 1.4e-28 130.2 80 81.2
Phvul.011G125800 Phaseolus vulgaris HOM05D007924 ORTHO05D010328 5.3e-23 111.7 60 88.3
BraSC48t46342Z Brassica rapa HOM05D007924 ORTHO05D010328 1.5e-22 110.2 71 74.6
BolSC28t60430H Brassica oleracea HOM05D007924 ORTHO05D010328 1.3e-21 107.1 52 94.2
Nitab4.5_0000172g1200 Nicotiana tabacum HOM05D007924 ORTHO05D007069 1.7e-21 106.7 72 76.4
PGSC0003DMG400013141 Solanum tuberosum HOM05D007924 ORTHO05D010328 1.0e-18 97.4 59 83.1
CsaV3_3G039780 Cucumis sativus L. HOM05D000558 ORTHO05D006060 3.0e-18 95.9 64 76.6
Nitab4.5_0002734g0010 Nicotiana tabacum HOM05D007924 ORTHO05D010328 6.2e-16 88.2 58 77.6
Nitab4.5_0002418g0260 Nicotiana tabacum HOM05D007924 ORTHO05D010328 2.4e-15 86.3 57 75.4
SHI38118 Sapria himalayana HOM05D007924 ORTHO05D010328 1.0e-13 80.9 49 75.5
MD02G1208400 Malus domestica HOM05D007924 ORTHO05D010328 3.8e-13 79.0 44 81.8
SHI34938 Sapria himalayana HOM05D007924 ORTHO05D010328 4.9e-13 78.6 74 59.5
Ah.02g118920 Amaranthus hybridus HOM05D005794 ORTHO05D006814 2.1e-11 73.2 45 77.8
Potri.011G045912 Populus trichocarpa HOM05D007924 ORTHO05D010328 1.0e-10 70.9 59 62.7


User provided reference genes

Program Settings