Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT16G0009 Cannabis sativa HOM05D001560 ORTHO05D004675 2.8e-111 405.2 191 100.0
Gohir.A01G022400 Gossypium hirsutum HOM05D001560 ORTHO05D004675 2.9e-108 395.2 191 97.4
CAN.G223.15 Capsicum annuum HOM05D001560 ORTHO05D004675 3.2e-107 391.7 191 96.9
RcHm_v2.0_Chr6g0257991 Rosa chinensis HOM05D001560 ORTHO05D004675 7.0e-107 390.6 191 96.9
RcHm_v2.0_MTg0498881 Rosa chinensis HOM05D001560 ORTHO05D004675 7.0e-107 390.6 191 96.9
ATMG00070 Arabidopsis thaliana HOM05D001560 ORTHO05D004675 9.2e-107 390.2 191 96.3
Lj2P1224T99 Lonicera japonica HOM05D001560 ORTHO05D004675 9.2e-107 390.2 191 96.3
BolSC28t60362H Brassica oleracea HOM05D001560 ORTHO05D004675 3.5e-106 388.3 191 96.3
BraSC48t46349Z Brassica rapa HOM05D001560 ORTHO05D004675 3.5e-106 388.3 191 96.3
LjContig00439g0006307 Lotus japonicus HOM05D001560 ORTHO05D004675 3.5e-106 388.3 191 96.3
LjContig00446g0014136 Lotus japonicus HOM05D001560 ORTHO05D004675 3.5e-106 388.3 191 96.3
Sp3g25870 Schrenkiella parvula HOM05D001560 ORTHO05D004675 3.5e-106 388.3 191 96.3
Migut.D01524 Erythranthe guttata HOM05D001560 ORTHO05D004675 4.6e-106 387.9 191 95.8
CARHR282620 Cardamine hirsuta HOM05D001560 ORTHO05D004675 7.8e-106 387.1 191 95.8
Sed0020323 Sechium edule HOM05D001560 ORTHO05D004675 7.8e-106 387.1 191 95.8
Thhalv10022839m.g Eutrema salsugineum HOM05D001560 ORTHO05D004675 1.0e-105 386.7 191 95.8
CsaV3_UNG210330 Cucumis sativus L. HOM05D001560 ORTHO05D004675 1.7e-105 386.0 191 95.8
BcaC09g49590 Brassica carinata HOM05D001560 ORTHO05D004675 2.3e-105 385.6 191 95.3
Lalb_Chr00c39g0409121 Lupinus albus HOM05D001560 ORTHO05D004675 3.0e-105 385.2 191 95.8
Lalb_Chr00c39g0409261 Lupinus albus HOM05D001560 ORTHO05D004675 3.0e-105 385.2 191 95.8
Lalb_Chr00c51g0413181 Lupinus albus HOM05D001560 ORTHO05D004675 3.0e-105 385.2 191 95.8
HanXRQChr00c0055g0571471 Helianthus annuus HOM05D001560 ORTHO05D004675 5.0e-105 384.4 191 95.3
HanXRQMTg0579651 Helianthus annuus HOM05D001560 ORTHO05D004675 5.0e-105 384.4 191 95.3
DCAR_032439 Daucus carota HOM05D001560 ORTHO05D004675 6.6e-105 384.0 189 95.8
Ah.10g027950 Amaranthus hybridus HOM05D001560 ORTHO05D004675 1.9e-104 382.5 188 94.7
unitig_87.g28016 Utricularia gibba HOM05D001560 ORTHO05D004675 9.5e-104 380.2 191 94.8
Ah.02g118870 Amaranthus hybridus HOM05D001560 ORTHO05D004675 1.2e-103 379.8 188 93.6
Potri.013G066660 Populus trichocarpa HOM05D001560 ORTHO05D004675 1.4e-102 376.3 191 93.2
Nn1g10115 Nelumbo nucifera HOM05D001560 ORTHO05D004675 6.8e-102 374.0 191 93.7
Solyc00g019950.1 Solanum lycopersicum HOM05D001560 ORTHO05D004675 8.9e-102 373.6 184 95.7
Ah.08g210720 Amaranthus hybridus HOM05D001560 ORTHO05D004675 2.6e-101 372.1 188 93.1
HanXRQChr02g0035261 Helianthus annuus HOM05D001560 ORTHO05D004675 4.4e-101 371.3 191 92.7
Ah.10g028660 Amaranthus hybridus HOM05D001560 ORTHO05D004675 2.4e-99 365.5 179 95.5
Zm00001eb382940 Zea mays HOM05D001560 ORTHO05D004675 4.6e-98 361.3 191 90.1
SHI37164 Sapria himalayana HOM05D001560 ORTHO05D003613 6.6e-97 357.5 188 88.8
SalBow1G1852 Salvia bowleyana HOM05D001560 ORTHO05D004675 5.6e-96 354.4 170 98.2
CDE02G0735 Ceratophyllum demersum HOM05D001560 ORTHO05D004675 9.5e-96 353.6 189 89.9
Medtr0212s0080 Medicago truncatula HOM05D001560 ORTHO05D004675 2.1e-95 352.4 187 88.8
Psat7g198960 Pisum sativum HOM05D001560 ORTHO05D004675 2.1e-95 352.4 187 88.8
arahy.Tifrunner.gnm1.ann1.HAH5KR Arachis hypogaea HOM05D001560 ORTHO05D004675 5.2e-94 347.8 170 97.1
Lj2P1227T100 Lonicera japonica HOM05D001560 ORTHO05D004675 8.9e-94 347.1 170 97.1
Aa31csc239G40 Aethionema arabicum HOM05D001560 ORTHO05D004675 1.2e-93 346.7 170 97.1
SGA_v2.0_scaffold245G44645 Striga asiatica HOM05D001560 ORTHO05D004675 9.8e-93 343.6 170 95.9
Thhalv10002997m.g Eutrema salsugineum HOM05D001560 ORTHO05D004675 1.7e-92 342.8 170 96.5
BcaC09g49591 Brassica carinata HOM05D001560 ORTHO05D004675 2.2e-92 342.4 167 97.0
Dinv06677 Davidia involucrata HOM05D001560 ORTHO05D004675 8.3e-92 340.5 165 97.6
HanXRQChr12g0358671 Helianthus annuus HOM05D001560 ORTHO05D004675 1.4e-91 339.7 170 95.3
DCAR_031657 Daucus carota HOM05D001560 ORTHO05D004675 1.9e-91 339.3 168 95.8
ECA039G0015 Erigeron canadensis HOM05D001560 ORTHO05D004675 2.4e-91 339.0 170 95.3
ECA039G0026 Erigeron canadensis HOM05D001560 ORTHO05D004675 2.4e-91 339.0 170 95.3
SabraMtG0007900 Salix brachista HOM05D001560 ORTHO05D004675 3.2e-91 338.6 170 94.7
DCAR_032222 Daucus carota HOM05D001560 ORTHO05D004675 1.2e-90 336.7 168 95.2
MBI05_g23323_MAGBIO Magnolia biondii HOM05D001560 ORTHO05D004675 2.7e-90 335.5 170 94.1
Hma1.2p1_1099F.1_g256790 Hydrangea macrophylla HOM05D001560 ORTHO05D004675 2.3e-89 332.4 165 95.2
SHI36380 Sapria himalayana HOM05D001560 ORTHO05D004675 7.3e-88 327.4 178 88.2
SHI51143 Sapria himalayana HOM05D001560 ORTHO05D004675 1.8e-86 322.8 170 90.6
BolSC28t60305H Brassica oleracea HOM05D001560 ORTHO05D004675 5.2e-86 321.2 185 83.2
Gorai.001G166700 Gossypium raimondii HOM05D007877 ORTHO05D009957 5.2e-86 321.2 160 94.4
SHI33931 Sapria himalayana HOM05D001560 ORTHO05D004675 8.4e-84 313.9 163 91.4
Cpa.g.sc38.8 Carica papaya HOM05D001560 ORTHO05D004675 1.1e-83 313.5 170 89.4
SHI42286 Sapria himalayana HOM05D000743 ORTHO05D004675 4.1e-83 311.6 166 89.8
SHI51556 Sapria himalayana HOM05D001560 ORTHO05D004675 4.1e-83 311.6 168 88.1
Lalb_Chr00c21g0406161 Lupinus albus HOM05D001560 ORTHO05D004675 2.7e-82 308.9 191 80.6
SHI48979 Sapria himalayana HOM05D001560 ORTHO05D004675 6.0e-82 307.8 179 83.2
SHI35320 Sapria himalayana HOM05D001560 ORTHO05D004675 1.7e-81 306.2 178 82.0
SHI40934 Sapria himalayana HOM05D001560 ORTHO05D004675 4.3e-80 301.6 165 87.3
SHI37161 Sapria himalayana HOM05D000743 ORTHO05D000580 1.2e-79 300.1 180 80.6
SHI46062 Sapria himalayana HOM05D001560 ORTHO05D004675 1.2e-79 300.1 164 87.2
Peaxi162Scf01588g00002 Petunia axillaris HOM05D001560 ORTHO05D004675 6.9e-78 294.3 170 84.1
Lsat_1_v5_gn_1_23980 Lactuca sativa HOM05D001560 ORTHO05D004675 1.2e-77 293.5 153 92.2
SHI37162 Sapria himalayana HOM05D001560 ORTHO05D004675 5.8e-77 291.2 164 86.0
SHI36583 Sapria himalayana HOM05D001560 ORTHO05D004675 1.7e-76 289.7 169 84.0
SHI47572 Sapria himalayana HOM05D001560 ORTHO05D004675 2.2e-76 289.3 188 73.4
RhsimMtG0004600 Rhododendron simsii HOM05D001560 ORTHO05D004675 2.4e-75 285.8 141 96.5
RhsimMtG0006100 Rhododendron simsii HOM05D001560 ORTHO05D004675 2.4e-75 285.8 141 96.5
Actinidia34872 Actinidia chinensis HOM05D001560 ORTHO05D004675 1.6e-74 283.1 146 93.2
SHI54579 Sapria himalayana HOM05D001560 ORTHO05D004675 3.1e-70 268.9 138 93.5
ECA238G3729 Erigeron canadensis HOM05D001560 ORTHO05D004675 6.9e-70 267.7 135 94.1
SHI49196 Sapria himalayana HOM05D001560 ORTHO05D004675 2.2e-68 262.7 135 93.3
SHI39080 Sapria himalayana HOM05D001560 ORTHO05D004675 9.3e-67 257.3 155 81.3
SHI52730 Sapria himalayana HOM05D001560 ORTHO05D004675 2.1e-66 256.1 142 85.9
SHI36971 Sapria himalayana HOM05D001560 ORTHO05D004675 3.5e-66 255.4 138 89.1
SHI43258 Sapria himalayana HOM05D001560 ORTHO05D004675 3.5e-66 255.4 138 89.1
SHI37085 Sapria himalayana HOM05D001560 ORTHO05D004675 1.0e-65 253.8 132 90.9
HanXRQChr10g0297171 Helianthus annuus HOM05D001560 ORTHO05D004675 2.3e-65 252.7 170 77.1
SHI35188 Sapria himalayana HOM05D001560 ORTHO05D004675 3.3e-64 248.8 131 89.3
SHI36016 Sapria himalayana HOM05D001560 ORTHO05D004675 1.3e-63 246.9 148 81.1
CsaV3_5G015950 Cucumis sativus L. HOM05D001560 ORTHO05D004675 5.3e-62 241.5 124 93.5
SHI53284 Sapria himalayana HOM05D001560 ORTHO05D004675 3.8e-60 235.3 136 84.6
BolC1t03442H Brassica oleracea HOM05D001560 ORTHO05D004675 1.9e-59 233.0 192 65.1
BraSC177t45760Z Brassica rapa HOM05D001560 ORTHO05D004675 1.2e-58 230.3 136 83.1
C01p34750 Brassica napus HOM05D001560 ORTHO05D004675 6.0e-58 228.0 192 64.6
SHI53856 Sapria himalayana HOM05D001560 ORTHO05D004675 1.5e-56 223.4 138 82.6
SHI50434 Sapria himalayana HOM05D001560 ORTHO05D004675 9.6e-56 220.7 135 82.2
SHI35231 Sapria himalayana HOM05D001560 ORTHO05D004675 2.1e-55 219.5 127 85.0
Sc13g0007750 Simmondsia chinensis HOM05D001560 ORTHO05D004675 3.7e-55 218.8 185 62.7
Sopen00g002540 Solanum pennellii HOM05D001560 ORTHO05D004675 3.1e-54 215.7 114 91.2
SHI35332 Sapria himalayana HOM05D001560 ORTHO05D004675 4.0e-54 215.3 112 90.2
Nitab4.5_0001152g0360 Nicotiana tabacum HOM05D001560 ORTHO05D004675 1.2e-53 213.8 148 73.0
arahy.Tifrunner.gnm1.ann1.11DKXG Arachis hypogaea HOM05D001560 ORTHO05D004675 1.0e-52 210.7 100 98.0
CARHR287160 Cardamine hirsuta HOM05D001560 ORTHO05D004675 6.5e-52 208.0 99 98.0
ECA041G0003 Erigeron canadensis HOM05D001560 ORTHO05D004675 1.4e-51 206.8 109 90.8
Ca_22175_v3 Cicer arietinum L. HOM05D001560 ORTHO05D004675 1.9e-51 206.5 96 100.0
arahy.Tifrunner.gnm1.ann1.E4X7TI Arachis hypogaea HOM05D001560 ORTHO05D004675 5.5e-51 204.9 97 97.9
Dinv29327 Davidia involucrata HOM05D001560 ORTHO05D004675 7.1e-51 204.5 99 97.0
Solyc08g065620.1 Solanum lycopersicum HOM05D001560 ORTHO05D004675 1.3e-49 200.3 102 92.2
BraSC48t46227Z Brassica rapa HOM05D001560 ORTHO05D004675 1.8e-49 199.9 109 88.1
CDE02G2746 Ceratophyllum demersum HOM05D001560 ORTHO05D004675 2.3e-49 199.5 138 73.9
SHI42241 Sapria himalayana HOM05D001560 ORTHO05D004675 2.3e-49 199.5 115 86.1
Cre07.g327400 Chlamydomonas reinhardtii HOM05D001560 ORTHO05D004675 2.8e-47 192.6 145 60.7
SHI45393 Sapria himalayana HOM05D001560 ORTHO05D004675 5.3e-46 188.3 100 89.0
Haze_26224 Corylus avellana HOM05D001560 ORTHO05D004675 9.0e-46 187.6 146 58.2
PGSC0003DMG400018984 Solanum tuberosum HOM05D001560 ORTHO05D004675 1.0e-44 184.1 99 87.9
Solyc03g061560.3 Solanum lycopersicum HOM05D001560 ORTHO05D004675 3.8e-44 182.2 102 85.3
SHI54988 Sapria himalayana HOM05D001560 ORTHO05D004675 5.0e-44 181.8 96 88.5
SHI26652 Sapria himalayana HOM05D001560 ORTHO05D004675 4.2e-43 178.7 94 89.4
Solyc01g020470.3 Solanum lycopersicum HOM05D001560 ORTHO05D004675 4.2e-43 178.7 143 65.0
TPR.G40193 Trifolium pratense HOM05D001560 ORTHO05D004675 7.2e-43 177.9 80 100.0
Nitab4.5_0001152g0390 Nicotiana tabacum HOM05D001560 ORTHO05D004675 1.8e-41 173.3 108 78.7
Os12g0422971 Oryza sativa ssp. japonica HOM05D001560 ORTHO05D004675 3.3e-40 169.1 89 89.9
SHI35482 Sapria himalayana HOM05D001560 ORTHO05D003613 9.1e-38 161.0 164 55.5
SHI37068 Sapria himalayana HOM05D001560 ORTHO05D004675 7.7e-37 157.9 172 51.7
SHI36139 Sapria himalayana HOM05D001560 ORTHO05D004675 1.0e-36 157.5 132 62.9
SHI36775 Sapria himalayana HOM05D001560 ORTHO05D004675 1.7e-36 156.8 87 83.9
SHI36786 Sapria himalayana HOM05D001560 ORTHO05D004675 1.7e-36 156.8 87 83.9
CAN.G134.23 Capsicum annuum HOM05D001560 ORTHO05D004675 5.0e-36 155.2 74 97.3
Gohir.A03G134200 Gossypium hirsutum HOM05D001560 ORTHO05D004675 5.0e-36 155.2 74 97.3
Manes.01G049495 Manihot esculenta HOM05D001560 ORTHO05D004675 8.5e-36 154.5 74 94.6
Solyc08g029250.1 Solanum lycopersicum HOM05D001560 ORTHO05D004675 2.5e-35 152.9 150 57.3
Zm00001eb436070 Zea mays HOM05D001560 ORTHO05D004675 3.2e-35 152.5 74 95.9
Zm00001eb440310 Zea mays HOM05D001560 ORTHO05D004675 3.2e-35 152.5 74 95.9
Zm00001eb440380 Zea mays HOM05D001560 ORTHO05D004675 3.2e-35 152.5 74 95.9
Zm00001eb442180 Zea mays HOM05D001560 ORTHO05D004675 3.2e-35 152.5 74 95.9
SMO053G0006 Selaginella moellendorffii HOM05D001560 ORTHO05D004675 2.1e-34 149.8 174 45.4
AUR62042344 Chenopodium quinoa HOM05D001560 ORTHO05D004675 1.4e-33 147.1 71 94.4
SHI39097 Sapria himalayana HOM05D001560 ORTHO05D004675 1.4e-33 147.1 80 86.2
SHI36375 Sapria himalayana HOM05D001560 ORTHO05D004675 1.5e-32 143.7 74 90.5
TPR.G20383 Trifolium pratense HOM05D001560 ORTHO05D004675 2.0e-32 143.3 86 77.9
Nitab4.5_0013170g0020 Nicotiana tabacum HOM05D001560 ORTHO05D004675 2.6e-32 142.9 72 91.7
SHI36081 Sapria himalayana HOM05D001560 ORTHO05D004675 2.2e-31 139.8 74 87.8
Manes.01G049510 Manihot esculenta HOM05D001560 ORTHO05D004675 8.2e-31 137.9 68 91.2
SHI38033 Sapria himalayana HOM05D001560 ORTHO05D004675 1.1e-30 137.5 74 87.8
SHI40902 Sapria himalayana HOM05D001560 ORTHO05D004675 1.4e-30 137.1 74 86.5
SHI39123 Sapria himalayana HOM05D001560 ORTHO05D004675 1.8e-30 136.7 74 86.5
Nitab4.5_0001127g0220 Nicotiana tabacum HOM05D001560 ORTHO05D004675 4.1e-30 135.6 74 85.1
SHI49835 Sapria himalayana HOM05D001560 ORTHO05D004675 6.9e-30 134.8 135 57.8
SHI50380 Sapria himalayana HOM05D001560 ORTHO05D004675 6.9e-30 134.8 135 57.8
SHI36939 Sapria himalayana HOM05D001560 ORTHO05D004675 9.1e-30 134.4 72 87.5
SHI36627 Sapria himalayana HOM05D001560 ORTHO05D004675 2.0e-29 133.3 70 88.6
SHI43451 Sapria himalayana HOM05D001560 ORTHO05D004675 2.6e-29 132.9 74 85.1
SHI34635 Sapria himalayana HOM05D001560 ORTHO05D004675 7.7e-29 131.3 72 84.7
TPR.G15690 Trifolium pratense HOM05D001560 ORTHO05D004675 1.0e-28 131.0 91 71.4
SHI34631 Sapria himalayana HOM05D001560 ORTHO05D004675 2.9e-28 129.4 74 85.1
SHI38213 Sapria himalayana HOM05D001560 ORTHO05D004675 5.0e-28 128.6 74 83.8
SHI27346 Sapria himalayana HOM05D001560 ORTHO05D004675 1.4e-27 127.1 71 85.9
SHI38099 Sapria himalayana HOM05D001560 ORTHO05D004675 1.6e-26 123.6 74 81.1
C01p34850 Brassica napus HOM05D001560 ORTHO05D004675 8.8e-25 117.9 57 94.7
PGSC0003DMG400020882 Solanum tuberosum HOM05D001560 ORTHO05D004675 9.7e-24 114.4 69 79.7
Nitab4.5_0000661g0100 Nicotiana tabacum HOM05D001560 ORTHO05D004675 2.8e-23 112.8 64 82.8
SHI33106 Sapria himalayana HOM05D000743 ORTHO05D000580 7.0e-22 108.2 59 89.8
Prupe.2G039100 Prunus persica HOM05D001560 ORTHO05D004675 3.5e-21 105.9 61 86.9
CsaV3_5G015880 Cucumis sativus L. HOM05D001560 ORTHO05D004675 2.9e-20 102.8 73 69.9
BraSC48t46315Z Brassica rapa HOM05D001560 ORTHO05D004675 1.1e-19 100.9 51 92.2
SHI44216 Sapria himalayana HOM05D001560 ORTHO05D004675 3.0e-17 92.8 69 68.1
SHI35323 Sapria himalayana HOM05D001560 ORTHO05D004675 2.6e-16 89.7 58 75.9
SHI36269 Sapria himalayana HOM05D001560 ORTHO05D004675 5.7e-16 88.6 111 47.7
Nitab4.5_0019346g0010 Nicotiana tabacum HOM05D001560 ORTHO05D004675 3.7e-15 85.9 44 90.9
SHI38481 Sapria himalayana HOM05D001560 ORTHO05D004675 1.2e-13 80.9 181 34.8
Nitab4.5_0001152g0580 Nicotiana tabacum HOM05D001560 ORTHO05D004675 3.5e-13 79.3 45 80.0
SHI33107 Sapria himalayana HOM05D001560 ORTHO05D004675 1.9e-11 73.6 50 72.0
EL10Ac7g17432 Beta vulgaris HOM05D001560 ORTHO05D004675 2.7e-10 69.7 35 88.6
Nitab4.5_0003709g0080 Nicotiana tabacum HOM05D012582 ORTHO05D011721 6.8e-09 65.1 30 96.7
DCAR_022732 Daucus carota HOM05D001560 ORTHO05D004675 8.8e-09 64.7 30 93.3
SHI35288 Sapria himalayana HOM05D001560 ORTHO05D004675 9.8e-08 61.2 34 82.4
SHI36570 Sapria himalayana HOM05D001560 ORTHO05D004675 8.3e-07 58.2 33 81.8
Medtr8g059730 Medicago truncatula HOM05D001560 ORTHO05D004675 1.4e-06 57.4 43 58.1


User provided reference genes

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