Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT16G0008 Cannabis sativa HOM05D007877 ORTHO05D009957 4.9e-157 557.8 280 100.0
Solyc00g500168.1 Solanum lycopersicum HOM05D007877 ORTHO05D009957 1.7e-149 532.7 280 96.1
Solyc00g500346.1 Solanum lycopersicum HOM05D007877 ORTHO05D009957 1.7e-149 532.7 280 96.1
Solyc00g500357.1 Solanum lycopersicum HOM05D007877 ORTHO05D009957 1.7e-149 532.7 280 96.1
RcHm_v2.0_MTg0499111 Rosa chinensis HOM05D007877 ORTHO05D009957 1.1e-145 520.0 269 97.0
Lj2P1225T96 Lonicera japonica HOM05D007877 ORTHO05D009957 3.7e-141 505.0 263 97.0
CARHR282940 Cardamine hirsuta HOM05D007877 ORTHO05D009957 8.6e-138 493.8 267 92.9
ATMG00570 Arabidopsis thaliana HOM05D007877 ORTHO05D009957 5.2e-135 484.6 267 91.8
CsaV3_UNG208000 Cucumis sativus L. HOM05D007877 ORTHO05D009957 6.4e-133 477.6 259 92.7
Aa31csc239G30 Aethionema arabicum HOM05D007877 ORTHO05D009957 1.1e-132 476.9 267 90.3
Zm00001eb436210 Zea mays HOM05D007877 ORTHO05D009957 2.4e-132 475.7 260 92.3
Zm00001eb436260 Zea mays HOM05D007877 ORTHO05D009957 2.4e-132 475.7 260 92.3
Zm00001eb436450 Zea mays HOM05D007877 ORTHO05D009957 2.4e-132 475.7 260 92.3
Zm00001eb436490 Zea mays HOM05D007877 ORTHO05D009957 2.4e-132 475.7 260 92.3
Zm00001eb441030 Zea mays HOM05D007877 ORTHO05D009957 2.4e-132 475.7 260 92.3
HanXRQChr00c0055g0571431 Helianthus annuus HOM05D007877 ORTHO05D009957 7.8e-131 470.7 250 95.6
HanXRQMTg0579501 Helianthus annuus HOM05D007877 ORTHO05D009957 7.8e-131 470.7 250 95.6
DCAR_032450 Daucus carota HOM05D007877 ORTHO05D009957 2.0e-126 456.1 241 95.4
Lalb_Chr00c29g0408181 Lupinus albus HOM05D007877 ORTHO05D009957 2.2e-125 452.6 243 94.7
Lalb_Chr22g0358751 Lupinus albus HOM05D007877 ORTHO05D009957 2.2e-125 452.6 243 94.7
TPR.G17000 Trifolium pratense HOM05D007877 ORTHO05D009957 4.6e-123 444.9 235 95.7
LjContig00315g0025322 Lotus japonicus HOM05D007877 ORTHO05D009957 8.1e-120 434.1 261 88.1
Gohir.A01G022475 Gossypium hirsutum HOM05D007877 ORTHO05D009957 3.0e-114 415.6 218 95.4
Gorai.001G166700 Gossypium raimondii HOM05D007877 ORTHO05D009957 1.2e-110 403.7 247 85.8
Thhalv10015628m.g Eutrema salsugineum HOM05D007877 ORTHO05D009957 1.0e-101 374.0 248 80.2
HanXRQChr00c0234g0572751 Helianthus annuus HOM05D007877 ORTHO05D009957 1.4e-100 370.2 196 95.4
SHI55214 Sapria himalayana HOM05D007877 ORTHO05D009957 2.3e-90 336.3 212 82.1
PSO541G3164 Papaver somniferum HOM05D007877 ORTHO05D009957 6.1e-83 311.6 235 68.5
PSO133G0099 Papaver somniferum HOM05D007877 ORTHO05D009957 5.1e-82 308.5 235 68.5
PSO384G0556 Papaver somniferum HOM05D007877 ORTHO05D009957 2.0e-81 306.6 235 68.1
Solyc00g500237.1 Solanum lycopersicum HOM05D007877 ORTHO05D009957 3.5e-78 295.8 282 64.5
Peaxi162Scf00508g00001 Petunia axillaris HOM05D007877 ORTHO05D009957 2.2e-77 293.1 231 73.2
SEGI_02417 Sequoiadendron giganteum HOM05D007877 ORTHO05D009957 1.7e-72 276.9 217 69.1
Nitab4.5_0009703g0110 Nicotiana tabacum HOM05D007877 ORTHO05D009957 3.2e-68 262.7 199 73.9
Nitab4.5_0000172g2240 Nicotiana tabacum HOM05D007877 ORTHO05D009957 9.4e-68 261.2 149 87.2
AUR62042354 Chenopodium quinoa HOM05D000743 ORTHO05D000580 8.0e-67 258.1 250 61.6
AUR62043788 Chenopodium quinoa HOM05D000743 ORTHO05D000580 8.0e-67 258.1 250 61.6
arahy.Tifrunner.gnm1.ann1.SK2G41 Arachis hypogaea HOM05D007877 ORTHO05D009957 5.7e-65 251.9 143 91.6
C04p19590 Brassica napus HOM05D007877 ORTHO05D009957 4.5e-62 242.3 148 87.2
HanXRQChr01g0007101 Helianthus annuus HOM05D007877 ORTHO05D009957 2.3e-58 229.9 134 83.6
Lsat_1_v5_gn_2_125060 Lactuca sativa HOM05D007877 ORTHO05D009957 1.1e-55 221.1 123 95.1
BolC4t23493H Brassica oleracea HOM05D007877 ORTHO05D009957 2.4e-55 219.9 124 92.7
CAN.G1159.16 Capsicum annuum HOM05D007877 ORTHO05D009957 1.0e-53 214.5 123 91.9
Phvul.005G124700 Phaseolus vulgaris HOM05D007877 ORTHO05D009957 1.9e-52 210.3 158 75.3
TAR371G0168 Trochodendron aralioides HOM05D007877 ORTHO05D009957 1.6e-51 207.2 116 95.7
BraSC48t46272Z Brassica rapa HOM05D007877 ORTHO05D009957 1.0e-50 204.5 115 93.0
BraSC177t45764Z Brassica rapa HOM05D007877 ORTHO05D009957 1.8e-50 203.8 115 93.0
Solyc12g035750.1 Solanum lycopersicum HOM05D007877 ORTHO05D009957 1.6e-46 190.7 135 72.6
Lsat_1_v5_gn_9_49261 Lactuca sativa HOM05D007877 ORTHO05D009957 1.0e-45 188.0 107 94.4
MD15G1309600 Malus domestica HOM05D007877 ORTHO05D009957 5.0e-45 185.7 107 84.1
Aqoxy12s004 Aquilegia oxysepala HOM05D007877 ORTHO05D009957 1.5e-44 184.1 116 87.1
Aqoxy38s004 Aquilegia oxysepala HOM05D007877 ORTHO05D009957 1.5e-44 184.1 116 87.1
Aqoxy1G02979 Aquilegia oxysepala HOM05D007877 ORTHO05D009957 9.5e-44 181.4 116 86.2
AUR62026822 Chenopodium quinoa HOM05D000743 ORTHO05D000580 1.7e-37 160.6 88 95.5
Psat0s1774g0160 Pisum sativum HOM05D007877 ORTHO05D009957 3.9e-37 159.5 98 88.8
RhsimMtG0001700 Rhododendron simsii HOM05D007877 ORTHO05D009957 7.3e-36 155.2 131 69.5
RhsimMtG0004900 Rhododendron simsii HOM05D007877 ORTHO05D009957 7.3e-36 155.2 131 69.5
Solyc05g023960.1 Solanum lycopersicum HOM05D007877 ORTHO05D009957 8.1e-35 151.8 93 79.6
unitig_87.g27972 Utricularia gibba HOM05D007877 ORTHO05D009957 1.8e-34 150.6 92 87.0
SEGI_25147 Sequoiadendron giganteum HOM05D007877 ORTHO05D009957 1.5e-33 147.5 117 69.2
Glyma.U026900 Glycine max HOM05D007877 ORTHO05D009957 2.0e-33 147.1 222 43.2
AUR62043917 Chenopodium quinoa HOM05D000743 ORTHO05D000580 2.2e-32 143.7 127 63.8
Nitab4.5_0015438g0010 Nicotiana tabacum HOM05D007877 ORTHO05D009957 4.6e-30 136.0 98 69.4
Solyc10g062060.1 Solanum lycopersicum HOM05D007877 ORTHO05D009957 1.0e-29 134.8 87 75.9
Nitab4.5_0004471g0150 Nicotiana tabacum HOM05D007877 ORTHO05D009957 1.3e-29 134.4 104 74.0
CARHR288300 Cardamine hirsuta HOM05D007877 ORTHO05D009957 6.6e-29 132.1 69 97.1
Solyc05g023970.1 Solanum lycopersicum HOM05D007877 ORTHO05D009957 3.3e-28 129.8 124 64.5
BraSC77t46652Z Brassica rapa HOM05D007877 ORTHO05D009957 1.2e-27 127.9 74 91.9
EL10Ac8g19721 Beta vulgaris HOM05D007877 ORTHO05D009957 8.1e-27 125.2 95 72.6
Ca_17162_v3 Cicer arietinum L. HOM05D000743 ORTHO05D000580 2.3e-26 123.6 71 94.4
Solyc10g062070.1 Solanum lycopersicum HOM05D007877 ORTHO05D009957 2.6e-25 120.2 89 75.3
BcaC05g26882 Brassica carinata HOM05D003467 ORTHO05D004220 7.6e-25 118.6 111 63.1
Ca_26709_v3 Cicer arietinum L. HOM05D010881 ORTHO05D026827 2.2e-24 117.1 61 93.4
Solyc04g049250.1 Solanum lycopersicum HOM05D007877 ORTHO05D009957 2.2e-24 117.1 122 57.4
Nn1g10077 Nelumbo nucifera HOM05D007877 ORTHO05D009957 9.2e-23 111.7 63 95.2
Nn1g10099 Nelumbo nucifera HOM05D007877 ORTHO05D009957 9.2e-23 111.7 63 95.2
CAN.G628.86 Capsicum annuum HOM05D007877 ORTHO05D009957 6.0e-22 109.0 56 91.1
SHI48166 Sapria himalayana HOM05D007877 ORTHO05D009957 3.0e-21 106.7 186 41.9
SHI32359 Sapria himalayana HOM05D007877 ORTHO05D009957 8.6e-21 105.1 99 59.6
Psat0s552g0160 Pisum sativum HOM05D007877 ORTHO05D009957 2.1e-19 100.5 62 83.9
Nitab4.5_0000010g0230 Nicotiana tabacum HOM05D007877 ORTHO05D009957 7.6e-17 92.0 70 71.4
C09p31620 Brassica napus HOM05D007877 ORTHO05D009957 1.7e-16 90.9 53 86.8
BcaC05g26874 Brassica carinata HOM05D003467 ORTHO05D004220 9.3e-15 85.1 68 73.5
BolC6t36215H Brassica oleracea HOM05D007877 ORTHO05D009957 1.6e-14 84.3 60 76.7
Peaxi162Scf00931g00018 Petunia axillaris HOM05D007877 ORTHO05D009957 1.5e-12 77.8 44 95.5
SHI24736 Sapria himalayana HOM05D007877 ORTHO05D009957 1.3e-11 74.7 48 75.0
ClCG05G014110 Citrullus lanatus HOM05D007877 ORTHO05D009957 1.4e-10 71.2 45 84.4
Nitab4.5_0001681g0060 Nicotiana tabacum HOM05D007877 ORTHO05D009957 1.5e-09 67.8 53 69.8
SalBow1G2595 Salvia bowleyana HOM05D009805 ORTHO05D010994 1.3e-08 64.7 53 67.9


User provided reference genes

Program Settings