Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT16G0003 Cannabis sativa HOM05D003430 ORTHO05D004809 4.4e-261 904.0 448 100.0
RcHm_v2.0_MTg0498431 Rosa chinensis HOM05D003430 ORTHO05D004809 4.9e-228 794.3 452 90.7
DCAR_032431 Daucus carota HOM05D003430 ORTHO05D004809 3.2e-227 791.6 451 88.7
A04p09460 Brassica napus HOM05D003430 ORTHO05D004809 2.3e-225 785.4 455 89.2
CARHR282710 Cardamine hirsuta HOM05D003430 ORTHO05D004809 1.1e-224 783.1 454 89.2
CARHR288640 Cardamine hirsuta HOM05D003430 ORTHO05D004809 1.1e-224 783.1 454 89.2
ATMG00180 Arabidopsis thaliana HOM05D003430 ORTHO05D004809 4.3e-224 781.2 454 89.0
Cfa023013 Carpinus fangiana HOM05D003430 ORTHO05D004809 1.4e-222 776.2 418 93.5
Lalb_Chr00c21g0406111 Lupinus albus HOM05D003430 ORTHO05D004809 5.0e-220 767.7 444 89.0
BraSC177t45748Z Brassica rapa HOM05D003430 ORTHO05D004809 8.5e-220 766.9 444 89.0
Peaxi162Scf00456g00037 Petunia axillaris HOM05D003430 ORTHO05D004809 2.1e-218 762.3 460 85.0
Aa31csc1081G20 Aethionema arabicum HOM05D003430 ORTHO05D004809 5.7e-216 754.2 485 81.9
HanXRQChr00c0055g0571401 Helianthus annuus HOM05D003430 ORTHO05D004809 3.6e-210 734.9 440 84.8
Ah.10g028080 Amaranthus hybridus HOM05D003430 ORTHO05D004809 2.9e-204 715.3 496 76.0
Solyc00g500241.1 Solanum lycopersicum HOM05D003430 ORTHO05D004809 2.9e-204 715.3 600 65.3
Medtr0082s0260 Medicago truncatula HOM05D003430 ORTHO05D004809 1.5e-200 703.0 654 61.6
HanXRQMTg0579531 Helianthus annuus HOM05D003430 ORTHO05D004809 4.1e-198 694.9 539 69.4
Gorai.001G162300 Gossypium raimondii HOM05D003430 ORTHO05D004809 3.0e-193 678.7 452 79.4
Dinv06724 Davidia involucrata HOM05D003430 ORTHO05D004809 3.7e-191 671.8 541 68.0
Solyc00g500224.1 Solanum lycopersicum HOM05D003430 ORTHO05D004809 8.2e-191 670.6 602 62.5
SGA_v2.0_scaffold245G44667 Striga asiatica HOM05D003430 ORTHO05D004809 3.5e-189 665.2 576 64.6
Solyc00g052430.2 Solanum lycopersicum HOM05D003430 ORTHO05D004809 1.7e-183 646.4 361 89.8
LjContig00439g0009782 Lotus japonicus HOM05D003430 ORTHO05D004809 1.1e-182 643.7 456 76.1
TPR.G13784 Trifolium pratense HOM05D003430 ORTHO05D004809 1.8e-182 642.9 380 87.9
Ah.01g011780 Amaranthus hybridus HOM05D003430 ORTHO05D004809 6.8e-169 597.8 486 67.5
Nitab4.5_0001127g0210 Nicotiana tabacum HOM05D003430 ORTHO05D004809 2.2e-167 592.8 451 71.4
ECA039G0023 Erigeron canadensis HOM05D003430 ORTHO05D004809 1.6e-165 586.6 556 59.9
LjContig00446g0005008 Lotus japonicus HOM05D003430 ORTHO05D004809 1.7e-164 583.2 456 71.1
Nitab4.5_0003945g0010 Nicotiana tabacum HOM05D003430 ORTHO05D004809 3.9e-164 582.0 460 68.5
HanXRQChr09g0250621 Helianthus annuus HOM05D003430 ORTHO05D004809 1.9e-163 579.7 460 68.3
HanXRQChr11g0335431 Helianthus annuus HOM05D003430 ORTHO05D004809 1.2e-154 550.4 441 69.4
MBI05_g40995_MAGBIO Magnolia biondii HOM05D003430 ORTHO05D004809 3.2e-142 509.2 453 64.9
Ca_28103_v3 Cicer arietinum L. HOM05D003430 ORTHO05D004809 6.0e-141 505.0 613 51.4
Gorai.002G142200 Gossypium raimondii HOM05D003430 ORTHO05D004809 2.5e-131 473.0 384 68.2
Thhalv10002931m.g Eutrema salsugineum HOM05D003430 ORTHO05D004809 1.9e-126 456.8 498 54.4
Lj2C1222G64 Lonicera japonica HOM05D003430 ORTHO05D004809 3.3e-123 446.0 256 89.8
Sopen00g002720 Solanum pennellii HOM05D003430 ORTHO05D004809 1.4e-118 430.6 256 87.1
BolSC28t60411H Brassica oleracea HOM05D003430 ORTHO05D004809 3.5e-117 426.0 260 86.9
Gohir.D01G116901 Gossypium hirsutum HOM05D003430 ORTHO05D004809 1.8e-116 423.7 241 86.3
Peaxi162Scf00456g00035 Petunia axillaris HOM05D003430 ORTHO05D004809 3.9e-116 422.5 256 85.9
SabraMtG0000400 Salix brachista HOM05D003430 ORTHO05D004809 3.9e-116 422.5 256 86.3
Nn1g10089 Nelumbo nucifera HOM05D003430 ORTHO05D004809 9.6e-115 417.9 243 89.7
Lalb_Chr00c39g0409071 Lupinus albus HOM05D003430 ORTHO05D004809 1.3e-114 417.5 260 86.2
Lalb_Chr00c39g0409251 Lupinus albus HOM05D003430 ORTHO05D004809 1.3e-114 417.5 260 86.2
Lalb_Chr00c51g0413171 Lupinus albus HOM05D003430 ORTHO05D004809 1.3e-114 417.5 260 86.2
BraSC48t46245Z Brassica rapa HOM05D003430 ORTHO05D004809 2.6e-112 409.8 216 92.1
BraSC54t46373Z Brassica rapa HOM05D003430 ORTHO05D004809 2.6e-112 409.8 216 92.1
Lalb_Chr10g0094601 Lupinus albus HOM05D003430 ORTHO05D004809 5.8e-112 408.7 260 84.6
Sopen11g022460 Solanum pennellii HOM05D000004 ORTHO05D000002 5.5e-110 402.1 236 88.1
Psat3g040120 Pisum sativum HOM05D003430 ORTHO05D004809 4.6e-109 399.1 247 86.6
VMungo0044G0002 Vigna mungo HOM05D003430 ORTHO05D004809 6.0e-109 398.7 239 88.3
CDE02G0363 Ceratophyllum demersum HOM05D003430 ORTHO05D004809 3.0e-108 396.4 256 81.6
Sc11g0004420 Simmondsia chinensis HOM05D003430 ORTHO05D004809 1.1e-107 394.4 243 85.2
AUR62042332 Chenopodium quinoa HOM05D003430 ORTHO05D004809 6.3e-106 388.7 243 84.0
PGSC0003DMG400037371 Solanum tuberosum HOM05D003430 ORTHO05D004809 8.2e-106 388.3 235 86.4
Zm00001eb435500 Zea mays HOM05D003430 ORTHO05D004809 1.8e-105 387.1 254 80.7
Zm00001eb436090 Zea mays HOM05D003430 ORTHO05D004809 1.8e-105 387.1 254 80.7
Zm00001eb437350 Zea mays HOM05D003430 ORTHO05D004809 1.8e-105 387.1 254 80.7
Zm00001eb440330 Zea mays HOM05D003430 ORTHO05D004809 1.8e-105 387.1 254 80.7
Zm00001eb440360 Zea mays HOM05D003430 ORTHO05D004809 1.8e-105 387.1 254 80.7
Zm00001eb442170 Zea mays HOM05D003430 ORTHO05D004809 1.8e-105 387.1 254 80.7
arahy.Tifrunner.gnm1.ann1.41QMJ9 Arachis hypogaea HOM05D003430 ORTHO05D004809 2.0e-104 383.6 260 80.4
arahy.Tifrunner.gnm1.ann1.AJMC4E Arachis hypogaea HOM05D003430 ORTHO05D004809 2.0e-104 383.6 260 80.4
SabraMtG0000300 Salix brachista HOM05D003430 ORTHO05D004809 2.0e-104 383.6 251 78.1
Hma1.2p1_1286F.1_g273040 Hydrangea macrophylla HOM05D003430 ORTHO05D004809 4.5e-104 382.5 242 83.1
SHI42478 Sapria himalayana HOM05D003430 ORTHO05D004809 5.9e-104 382.1 592 45.4
SalBow1G3892 Salvia bowleyana HOM05D003430 ORTHO05D004809 2.9e-103 379.8 243 84.0
Sp3g25650 Schrenkiella parvula HOM05D003430 ORTHO05D004809 6.7e-100 368.6 245 81.2
Sc11g0004440 Simmondsia chinensis HOM05D003430 ORTHO05D004809 1.1e-99 367.9 197 91.4
unitig_87.g27925 Utricularia gibba HOM05D003430 ORTHO05D004809 1.5e-99 367.5 256 79.3
BolSC28t60376H Brassica oleracea HOM05D003430 ORTHO05D004809 2.0e-99 367.1 315 65.1
Lsat_1_v5_gn_6_109000 Lactuca sativa HOM05D003430 ORTHO05D004809 1.3e-98 364.4 254 76.4
BraSC77t46628Z Brassica rapa HOM05D003430 ORTHO05D004809 8.2e-98 361.7 198 88.9
Medtr0024s0150 Medicago truncatula HOM05D003430 ORTHO05D004809 3.1e-97 359.8 196 88.8
Lalb_Chr00c39g0409061 Lupinus albus HOM05D003430 ORTHO05D004809 2.6e-96 356.7 187 92.5
Lalb_Chr00c39g0409241 Lupinus albus HOM05D003430 ORTHO05D004809 2.6e-96 356.7 187 92.5
Lalb_Chr00c51g0413151 Lupinus albus HOM05D003430 ORTHO05D004809 2.6e-96 356.7 187 92.5
arahy.Tifrunner.gnm1.ann1.13LUN9 Arachis hypogaea HOM05D003430 ORTHO05D004809 5.9e-96 355.5 187 92.0
arahy.Tifrunner.gnm1.ann1.2J3QCS Arachis hypogaea HOM05D003430 ORTHO05D004809 5.9e-96 355.5 187 92.0
arahy.Tifrunner.gnm1.ann1.4C4WEU Arachis hypogaea HOM05D003430 ORTHO05D004809 5.9e-96 355.5 187 92.0
arahy.Tifrunner.gnm1.ann1.ABQ8F7 Arachis hypogaea HOM05D003430 ORTHO05D004809 3.8e-95 352.8 239 80.3
arahy.Tifrunner.gnm1.ann1.CY2VCK Arachis hypogaea HOM05D003430 ORTHO05D004809 3.8e-95 352.8 239 80.3
ATR0559G258 Amborella trichopoda HOM05D003430 ORTHO05D004809 3.0e-92 343.2 196 86.2
Lj2C1231G44 Lonicera japonica HOM05D003430 ORTHO05D004809 7.4e-91 338.6 238 77.7
Sp3g25660 Schrenkiella parvula HOM05D003430 ORTHO05D004809 4.2e-86 322.8 197 83.2
SHI29635 Sapria himalayana HOM05D003430 ORTHO05D004809 1.6e-85 320.9 173 90.2
Zm00001eb435490 Zea mays HOM05D003430 ORTHO05D004809 3.6e-85 319.7 193 82.9
Zm00001eb436080 Zea mays HOM05D003430 ORTHO05D004809 3.6e-85 319.7 193 82.9
Cpa.g.c41010 Carica papaya HOM05D003430 ORTHO05D004809 1.0e-84 318.2 197 81.7
SHI29634 Sapria himalayana HOM05D003430 ORTHO05D004809 8.8e-84 315.1 256 69.1
COL.COLO4_04429 Corchorus olitorius HOM05D003430 ORTHO05D004809 2.6e-83 313.5 201 84.6
Lj2C1222T70 Lonicera japonica HOM05D003430 ORTHO05D004809 2.2e-82 310.5 167 90.4
Nn2g14911 Nelumbo nucifera HOM05D003430 ORTHO05D004809 3.1e-81 306.6 189 86.2
Medtr0024s0140 Medicago truncatula HOM05D003430 ORTHO05D004809 2.0e-80 303.9 193 85.5
Lj2C1222G56 Lonicera japonica HOM05D003430 ORTHO05D004809 2.5e-78 297.0 189 84.7
unitig_87.g27923 Utricularia gibba HOM05D003430 ORTHO05D004809 9.4e-78 295.0 164 87.8
VMungo0044G0003 Vigna mungo HOM05D003430 ORTHO05D004809 1.8e-73 280.8 163 84.7
arahy.Tifrunner.gnm1.ann1.087TPC Arachis hypogaea HOM05D003430 ORTHO05D004809 4.1e-73 279.6 245 66.9
arahy.Tifrunner.gnm1.ann1.Y9E1XU Arachis hypogaea HOM05D003430 ORTHO05D004809 5.3e-73 279.3 146 91.8
arahy.Tifrunner.gnm1.ann1.ZQA7LX Arachis hypogaea HOM05D003430 ORTHO05D004809 5.3e-73 279.3 146 91.8
Nitab4.5_0001152g0350 Nicotiana tabacum HOM05D003430 ORTHO05D004809 5.5e-70 269.2 188 73.4
CDE02G3943 Ceratophyllum demersum HOM05D003430 ORTHO05D004809 1.7e-66 257.7 148 85.1
HanXRQChr11g0335401 Helianthus annuus HOM05D003430 ORTHO05D004809 2.4e-65 253.8 231 63.6
Lj2C1222T53 Lonicera japonica HOM05D003430 ORTHO05D004809 1.0e-63 248.4 124 94.4
Aqoxy23s002 Aquilegia oxysepala HOM05D003430 ORTHO05D004809 1.3e-63 248.1 140 88.6
EL10Ac3g07005 Beta vulgaris HOM05D003430 ORTHO05D004809 7.2e-62 242.3 154 84.4
arahy.Tifrunner.gnm1.ann1.0UJ9QK Arachis hypogaea HOM05D003430 ORTHO05D004809 8.0e-61 238.8 198 70.2
Nitab4.5_0000172g0240 Nicotiana tabacum HOM05D003430 ORTHO05D004809 5.4e-57 226.1 241 55.2
Lsat_1_v5_gn_5_16620 Lactuca sativa HOM05D003430 ORTHO05D004809 1.0e-55 221.9 172 73.3
Lj6g0002337 Lotus japonicus HOM05D003430 ORTHO05D004809 1.6e-53 214.5 146 76.0
Peaxi162Scf00456g00036 Petunia axillaris HOM05D003430 ORTHO05D004809 1.6e-53 214.5 111 92.8
BcaC05g27378 Brassica carinata HOM05D003430 ORTHO05D004809 6.1e-53 212.6 119 91.6
Pp3c4_28970 Physcomitrium patens HOM05D003430 ORTHO05D004809 6.1e-53 212.6 199 61.8
Pp3c4_28972 Physcomitrium patens HOM05D003430 ORTHO05D004809 6.1e-53 212.6 199 61.8
Solyc10g076630.1 Solanum lycopersicum HOM05D003430 ORTHO05D004809 2.6e-51 207.2 109 87.2
BolSC28t60410H Brassica oleracea HOM05D003430 ORTHO05D004809 5.8e-51 206.1 111 86.5
RhsimMtG0004400 Rhododendron simsii HOM05D003430 ORTHO05D004809 8.3e-50 202.2 114 89.5
SHI04802 Sapria himalayana HOM05D003430 ORTHO05D004809 6.0e-48 196.1 174 60.9
Nitab4.5_0000172g1130 Nicotiana tabacum HOM05D003430 ORTHO05D004809 6.6e-47 192.6 181 56.4
COL.COLO4_04428 Corchorus olitorius HOM05D003430 ORTHO05D004809 8.6e-47 192.2 118 84.7
SHI50824 Sapria himalayana HOM05D003430 ORTHO05D004809 1.3e-42 178.3 113 83.2
Nitab4.5_0001152g0410 Nicotiana tabacum HOM05D003430 ORTHO05D004809 7.8e-40 169.1 109 83.5
Sabra12G0092700 Salix brachista HOM05D003430 ORTHO05D004809 1.3e-39 168.3 106 84.0
Nitab4.5_0010559g0010 Nicotiana tabacum HOM05D003430 ORTHO05D004809 1.4e-36 158.3 84 88.1
Solyc11g039360.2 Solanum lycopersicum HOM05D003430 ORTHO05D004809 2.3e-36 157.5 84 88.1
Nitab4.5_0000172g0960 Nicotiana tabacum HOM05D003430 ORTHO05D004809 2.6e-35 154.1 138 65.2
Nitab4.5_0004256g0030 Nicotiana tabacum HOM05D003430 ORTHO05D004809 3.4e-35 153.7 79 89.9
SHI20516 Sapria himalayana HOM05D003430 ORTHO05D004809 2.2e-34 151.0 142 61.3
BolC1t03462H Brassica oleracea HOM05D003430 ORTHO05D004809 1.1e-33 148.7 93 81.7
Gohir.D01G117000 Gossypium hirsutum HOM05D003430 ORTHO05D004809 2.4e-33 147.5 96 79.2
Aqoxy4G00518 Aquilegia oxysepala HOM05D003430 ORTHO05D004809 4.1e-33 146.7 93 81.7
CAN.G600.1 Capsicum annuum HOM05D003430 ORTHO05D004809 5.4e-33 146.4 84 82.1
BolC1t03461H Brassica oleracea HOM05D003430 ORTHO05D004809 2.1e-29 134.4 131 58.8
SHI20518 Sapria himalayana HOM05D003430 ORTHO05D004809 3.6e-29 133.7 131 56.5
AT2G07815 Arabidopsis thaliana HOM05D003430 ORTHO05D004809 1.1e-28 132.1 76 85.5
BraSC54t46375Z Brassica rapa HOM05D003430 ORTHO05D004809 1.1e-28 132.1 76 85.5
BraSC77t46627Z Brassica rapa HOM05D003430 ORTHO05D004809 1.1e-28 132.1 76 85.5
SHI03773 Sapria himalayana HOM05D003430 ORTHO05D004809 1.1e-28 132.1 186 43.0
Lalb_Chr21g0308991 Lupinus albus HOM05D002109 ORTHO05D002149 4.2e-25 120.2 69 85.5
Medtr8g091515 Medicago truncatula HOM05D003430 ORTHO05D004809 2.5e-22 110.9 65 84.6
Solyc05g025700.1 Solanum lycopersicum HOM05D003430 ORTHO05D004809 3.6e-21 107.1 109 54.1
arahy.Tifrunner.gnm1.ann1.J6HUIG Arachis hypogaea HOM05D003430 ORTHO05D026951 3.1e-20 104.0 59 86.4
Nn044s41806 Nelumbo nucifera HOM05D003430 ORTHO05D004809 3.1e-20 104.0 59 88.1
GSVIVG01031933001 Vitis vinifera HOM05D003430 ORTHO05D004809 1.3e-18 98.6 66 68.2
SHI31749 Sapria himalayana HOM05D003430 ORTHO05D004809 3.8e-18 97.1 53 86.8
Solyc03g013370.1 Solanum lycopersicum HOM05D003430 ORTHO05D004809 6.4e-18 96.3 54 81.5
SHI04803 Sapria himalayana HOM05D003430 ORTHO05D004809 4.2e-17 93.6 78 62.8
TPR.G22979 Trifolium pratense HOM05D000681 ORTHO05D007906 2.1e-16 91.3 48 89.6
SHI25675 Sapria himalayana HOM05D003430 ORTHO05D004809 7.9e-16 89.4 125 40.8
SHI33655 Sapria himalayana HOM05D003430 ORTHO05D004809 5.1e-15 86.7 174 39.7
SHI32119 Sapria himalayana HOM05D003430 ORTHO05D004809 3.3e-14 84.0 64 67.2
SHI33657 Sapria himalayana HOM05D003430 ORTHO05D004809 4.3e-14 83.6 172 34.9
C01p34960 Brassica napus HOM05D003430 ORTHO05D004809 1.6e-13 81.6 165 37.0
SHI32117 Sapria himalayana HOM05D003430 ORTHO05D004809 1.6e-13 81.6 66 65.2
Ciclev10017542m.g Citrus clementina HOM05D003430 ORTHO05D004809 6.2e-13 79.7 46 80.4
SHI20517 Sapria himalayana HOM05D003430 ORTHO05D004809 1.1e-12 79.0 81 56.8
TPR.G24362 Trifolium pratense HOM05D003430 ORTHO05D004809 1.8e-12 78.2 71 66.2
Medtr5g068830 Medicago truncatula HOM05D003430 ORTHO05D004809 5.3e-12 76.6 56 73.2
Prupe.5G026600 Prunus persica HOM05D003430 ORTHO05D004809 1.5e-11 75.1 68 60.3
SGA_v2.0_scaffold178G39492 Striga asiatica HOM05D003430 ORTHO05D004809 2.0e-11 74.7 53 64.2
TPR.G457 Trifolium pratense HOM05D003430 ORTHO05D004809 2.9e-10 70.9 43 81.4
Nitab4.5_0000684g0110 Nicotiana tabacum HOM05D003430 ORTHO05D015169 8.4e-10 69.3 47 72.3
Nitab4.5_0000172g1190 Nicotiana tabacum HOM05D003430 ORTHO05D004809 1.4e-09 68.6 40 85.0
Mapoly0017s0010 Marchantia polymorpha HOM05D003430 ORTHO05D004809 4.2e-09 67.0 59 62.7
Solyc00g500167.1 Solanum lycopersicum HOM05D001426 ORTHO05D001389 1.6e-08 65.1 36 86.1
Peaxi162Scf00160g00035 Petunia axillaris HOM05D004637 ORTHO05D005320 4.6e-08 63.5 32 87.5
SalBow1G2589 Salvia bowleyana HOM05D003430 ORTHO05D004809 6.7e-07 59.7 31 87.1
Solyc04g071020.1 Solanum lycopersicum HOM05D003430 ORTHO05D000314 7.4e-06 56.2 46 69.6


User provided reference genes

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