Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT11G2690 Cannabis sativa HOM05D006147 ORTHO05D007501 1.4e-201 706.1 349 100.0
Prupe.8G083600 Prunus persica HOM05D006147 ORTHO05D007501 8.7e-164 580.5 349 81.1
FAN27G3378 Fragaria x ananassa HOM05D006147 ORTHO05D007501 3.3e-163 578.6 350 80.3
RcHm_v2.0_Chr6g0267981 Rosa chinensis HOM05D006147 ORTHO05D007501 4.3e-163 578.2 350 80.0
MD10G1062800 Malus domestica HOM05D006147 ORTHO05D007501 6.3e-162 574.3 349 79.9
MD05G1055500 Malus domestica HOM05D006147 ORTHO05D007501 8.2e-162 573.9 349 79.4
Medtr4g072040 Medicago truncatula HOM05D006147 ORTHO05D007501 8.2e-162 573.9 351 79.2
QL11p046465 Quercus lobata HOM05D006147 ORTHO05D007501 8.2e-162 573.9 348 80.2
Cfa005114 Carpinus fangiana HOM05D006147 ORTHO05D007501 1.2e-160 570.1 349 80.5
TPR.G28159 Trifolium pratense HOM05D006147 ORTHO05D007501 2.0e-160 569.3 350 78.0
COL.COLO4_26048 Corchorus olitorius HOM05D006147 ORTHO05D007501 7.7e-160 567.4 345 80.0
TAR628G0064 Trochodendron aralioides HOM05D006147 ORTHO05D007501 1.4e-158 563.1 354 78.0
Lalb_Chr03g0025341 Lupinus albus HOM05D006147 ORTHO05D007501 3.2e-158 562.0 350 77.4
Potri.009G124800 Populus trichocarpa HOM05D006147 ORTHO05D007501 5.5e-158 561.2 344 81.1
VMungo1127G0575 Vigna mungo HOM05D006147 ORTHO05D007501 9.4e-158 560.5 350 78.0
Gohir.A03G199400 Gossypium hirsutum HOM05D006147 ORTHO05D007501 1.2e-157 560.1 343 80.5
Thecc.02G074800 Theobroma cacao HOM05D006147 ORTHO05D007501 2.7e-157 558.9 347 79.0
Gohir.D02G220700 Gossypium hirsutum HOM05D006147 ORTHO05D007501 4.6e-157 558.1 343 80.2
Cpa.g.sc150.15 Carica papaya HOM05D006147 ORTHO05D007501 7.9e-157 557.4 346 79.2
FAN15G0109 Fragaria x ananassa HOM05D006147 ORTHO05D007501 3.0e-156 555.4 353 78.2
Sabra09G0095800 Salix brachista HOM05D006147 ORTHO05D007501 3.9e-156 555.1 354 79.1
TWI31G1450 Tripterygium wilfordii HOM05D006147 ORTHO05D007501 1.1e-155 553.5 346 77.7
Ca_20936_v3 Cicer arietinum L. HOM05D006147 ORTHO05D007501 3.3e-155 552.0 350 76.9
Glyma.11G110000 Glycine max HOM05D006147 ORTHO05D007501 3.3e-155 552.0 351 76.9
Lj3g0027328 Lotus japonicus HOM05D006147 ORTHO05D007501 7.4e-155 550.8 350 76.9
Ciclev10028728m.g Citrus clementina HOM05D006147 ORTHO05D007501 9.7e-155 550.4 350 77.1
Atru.chr5.3146 Acer truncatum HOM05D006147 ORTHO05D007501 3.7e-154 548.5 348 78.2
arahy.Tifrunner.gnm1.ann1.S6V2XE Arachis hypogaea HOM05D006147 ORTHO05D007501 4.8e-154 548.1 357 75.6
arahy.Tifrunner.gnm1.ann1.JUX7JJ Arachis hypogaea HOM05D006147 ORTHO05D007501 8.2e-154 547.4 357 75.6
CAN.G1635.6 Capsicum annuum HOM05D006147 ORTHO05D007501 4.1e-153 545.0 350 76.6
Sed0012779 Sechium edule HOM05D006147 ORTHO05D007501 6.9e-153 544.3 350 78.0
GSVIVG01024169001 Vitis vinifera HOM05D006147 ORTHO05D007501 1.5e-152 543.1 354 74.9
Duzib248G0035 Durio zibethinus HOM05D006147 ORTHO05D007501 3.4e-152 542.0 388 71.1
Eucgr.G01732 Eucalyptus grandis HOM05D006147 ORTHO05D007501 3.4e-152 542.0 348 75.0
Aqoxy6G02357 Aquilegia oxysepala HOM05D006147 ORTHO05D007501 8.5e-151 537.3 344 76.7
PGSC0003DMG402031287 Solanum tuberosum HOM05D006147 ORTHO05D007501 3.2e-150 535.4 352 74.7
CsaV3_7G000410 Cucumis sativus L. HOM05D006147 ORTHO05D007501 1.2e-149 533.5 350 76.0
PGR042G0282 Punica granatum HOM05D006147 ORTHO05D007501 1.2e-149 533.5 344 76.2
vmacro17420 Vaccinium macrocarpon HOM05D006147 ORTHO05D007501 1.6e-149 533.1 374 71.1
CiPaw.05G073500 Carya illinoinensis HOM05D006147 ORTHO05D007501 2.1e-149 532.7 303 85.8
Haze_02237 Corylus avellana HOM05D006147 ORTHO05D007501 4.7e-149 531.6 397 69.5
Sopen09g034870 Solanum pennellii HOM05D006147 ORTHO05D007501 6.1e-149 531.2 352 73.9
Solyc09g091970.4 Solanum lycopersicum HOM05D006147 ORTHO05D007501 1.8e-148 529.6 352 73.9
AT2G21280 Arabidopsis thaliana HOM05D006147 ORTHO05D007501 2.3e-148 529.3 344 74.4
AL4G10420 Arabidopsis lyrata HOM05D006147 ORTHO05D007501 1.1e-147 526.9 344 73.3
Carub.0004s0032 Capsella rubella HOM05D006147 ORTHO05D007501 2.0e-147 526.2 346 73.7
SalBow3G3875 Salvia bowleyana HOM05D006147 ORTHO05D007501 2.0e-147 526.2 350 74.0
Migut.N01278 Erythranthe guttata HOM05D006147 ORTHO05D007501 2.6e-147 525.8 350 73.1
THA.LOC104804110 Tarenaya hassleriana HOM05D006147 ORTHO05D007501 5.7e-147 524.6 334 76.0
AUR62016834 Chenopodium quinoa HOM05D006147 ORTHO05D007501 1.3e-146 523.5 357 72.8
Aa31LG7G15210 Aethionema arabicum HOM05D006147 ORTHO05D007501 1.7e-146 523.1 345 73.3
Glyma.12G036900 Glycine max HOM05D006147 ORTHO05D007501 3.7e-146 521.9 305 82.0
CARHR112150 Cardamine hirsuta HOM05D006147 ORTHO05D007501 6.3e-146 521.2 345 73.0
Peaxi162Scf00684g00123 Petunia axillaris HOM05D006147 ORTHO05D007501 8.2e-146 520.8 328 76.8
Psat7g138880 Pisum sativum HOM05D006147 ORTHO05D007501 8.2e-146 520.8 303 82.2
Thhalv10000221m.g Eutrema salsugineum HOM05D006147 ORTHO05D007501 1.1e-145 520.4 345 72.8
Phvul.011G038600 Phaseolus vulgaris HOM05D006147 ORTHO05D007501 1.1e-145 520.4 303 83.2
A04p16060 Brassica napus HOM05D006147 ORTHO05D007501 4.1e-145 518.5 342 74.0
ECA233G5423 Erigeron canadensis HOM05D006147 ORTHO05D001140 4.1e-145 518.5 352 72.4
Sp4g00470 Schrenkiella parvula HOM05D006147 ORTHO05D007501 4.1e-145 518.5 345 72.5
C04p50520 Brassica napus HOM05D006147 ORTHO05D007501 5.3e-145 518.1 347 73.5
EL10Ac9g21633 Beta vulgaris HOM05D006147 ORTHO05D007501 2.6e-144 515.8 357 72.0
Gorai.005G248600 Gossypium raimondii HOM05D006147 ORTHO05D007501 3.5e-144 515.4 327 77.7
PSO210G6769 Papaver somniferum HOM05D006147 ORTHO05D007501 3.5e-144 515.4 354 72.6
CSS0016386 Camellia sinensis var. sinensis HOM05D006147 ORTHO05D007501 7.7e-144 514.2 302 82.1
BcaC02g08802 Brassica carinata HOM05D006147 ORTHO05D007501 1.3e-143 513.5 347 72.6
BolC4t26650H Brassica oleracea HOM05D006147 ORTHO05D007501 1.3e-143 513.5 347 72.6
Manes.04G083100 Manihot esculenta HOM05D006147 ORTHO05D007501 2.2e-143 512.7 303 81.2
Oeu055635.1 Olea europaea HOM05D006147 ORTHO05D007501 2.2e-143 512.7 310 79.7
CSS0033675 Camellia sinensis var. sinensis HOM05D006147 ORTHO05D007501 1.9e-142 509.6 302 81.1
Actinidia02248 Actinidia chinensis HOM05D006147 ORTHO05D007501 4.2e-142 508.4 302 81.5
AUR62010384 Chenopodium quinoa HOM05D006147 ORTHO05D007501 7.2e-142 507.7 388 67.0
Hund00177 Selenicereus undatus HOM05D006147 ORTHO05D007501 6.7e-140 501.1 325 74.5
ATR0149G025 Amborella trichopoda HOM05D006147 ORTHO05D007501 8.8e-140 500.7 340 72.4
Hund00185 Selenicereus undatus HOM05D006147 ORTHO05D007501 5.7e-139 498.0 311 76.5
Lj5C189G13 Lonicera japonica HOM05D006147 ORTHO05D007501 3.8e-135 485.3 325 74.2
Rhsim05G0068100 Rhododendron simsii HOM05D006147 ORTHO05D007501 1.6e-133 479.9 383 64.5
HPP92_002502 Vanilla planifolia HOM05D006147 ORTHO05D007501 1.6e-133 479.9 304 74.7
Sc18g0005390 Simmondsia chinensis HOM05D006147 ORTHO05D007501 2.8e-130 469.2 327 73.1
ClCG02G004540 Citrullus lanatus HOM05D006147 ORTHO05D007501 6.3e-130 468.0 341 70.4
DCAR_003686 Daucus carota HOM05D006147 ORTHO05D007501 8.3e-130 467.6 283 78.8
Os02g0834700 Oryza sativa ssp. japonica HOM05D006147 ORTHO05D007501 9.1e-129 464.2 315 71.1
CDE02G0092 Ceratophyllum demersum HOM05D006147 ORTHO05D007501 5.9e-128 461.5 345 66.1
Lsat_1_v5_gn_8_127980 Lactuca sativa HOM05D006147 ORTHO05D007501 3.8e-127 458.8 360 66.4
MELO3C002785.2 Cucumis melo HOM05D006147 ORTHO05D007501 2.8e-125 452.6 299 75.3
Mapoly0021s0030 Marchantia polymorpha HOM05D006147 ORTHO05D007501 1.5e-123 446.8 338 63.3
Pp3c7_11090 Physcomitrium patens HOM05D006147 ORTHO05D007501 1.2e-120 437.2 303 66.7
Pp3c7_11100 Physcomitrium patens HOM05D006147 ORTHO05D007501 1.2e-120 437.2 303 66.7
Nitab4.5_0001154g0060 Nicotiana tabacum HOM05D006147 ORTHO05D007501 1.0e-119 434.1 307 69.1
SMO146G0042 Selaginella moellendorffii HOM05D006147 ORTHO05D007501 2.9e-119 432.6 302 66.9
Zm00001eb259680 Zea mays HOM05D006147 ORTHO05D007501 8.9e-116 421.0 292 70.5
PSO170G3006 Papaver somniferum HOM05D006147 ORTHO05D007501 2.5e-110 402.9 353 61.2
Cc02_g16890 Coffea canephora HOM05D006147 ORTHO05D007501 2.4e-105 386.3 267 71.9
unitig_899.g15602 Utricularia gibba HOM05D006147 ORTHO05D007501 4.3e-102 375.6 281 64.8
Dinv41999 Davidia involucrata HOM05D006147 ORTHO05D007501 5.2e-100 368.6 252 72.6
Cre05.g233305 Chlamydomonas reinhardtii HOM05D006147 ORTHO05D007501 3.5e-96 355.9 303 54.8
MCO05G212 Micromonas commoda HOM05D006147 ORTHO05D007501 2.7e-88 329.7 306 51.3
Nn6g32256 Nelumbo nucifera HOM05D006147 ORTHO05D007501 6.6e-87 325.1 242 69.4
SGA_v2.0_scaffold80G25875 Striga asiatica HOM05D006147 ORTHO05D007501 1.1e-84 317.8 258 61.6
Nitab4.5_0001370g0020 Nicotiana tabacum HOM05D006147 ORTHO05D007501 9.0e-84 314.7 184 81.0
AUR62040654 Chenopodium quinoa HOM05D006147 ORTHO05D007501 2.6e-83 313.2 377 49.6
MCO16G248 Micromonas commoda HOM05D006147 ORTHO05D007501 4.2e-81 305.8 310 48.7
FvH4_2g10480 Fragaria vesca HOM05D006147 ORTHO05D007501 7.1e-81 305.1 226 68.6
PRCOL_00000238 Prasinoderma coloniale HOM05D006147 ORTHO05D007501 2.2e-74 283.5 241 56.4
arahy.Tifrunner.gnm1.ann1.B04QBU Arachis hypogaea HOM05D006147 ORTHO05D007501 6.4e-74 282.0 202 70.8
MELO3C028749.2 Cucumis melo HOM05D006147 ORTHO05D007501 1.0e-71 274.6 246 61.4
Nn4g26316 Nelumbo nucifera HOM05D006147 ORTHO05D007501 1.6e-56 224.2 124 82.3
Nn6g32490 Nelumbo nucifera HOM05D006147 ORTHO05D007501 1.6e-56 224.2 124 82.3
C09p25880 Brassica napus HOM05D006147 ORTHO05D007501 3.9e-55 219.5 122 80.3
BolC9t55495H Brassica oleracea HOM05D006147 ORTHO05D007501 1.1e-54 218.0 122 79.5
arahy.Tifrunner.gnm1.ann1.KZ1FWN Arachis hypogaea HOM05D006147 ORTHO05D007501 2.4e-52 210.3 182 63.2
arahy.Tifrunner.gnm1.ann1.63XKYH Arachis hypogaea HOM05D006147 ORTHO05D007501 2.0e-51 207.2 137 75.9
SEGI_33639 Sequoiadendron giganteum HOM05D006147 ORTHO05D007501 6.1e-40 169.1 103 73.8
Pp3s34_200 Physcomitrium patens HOM05D006147 ORTHO05D007501 2.8e-37 160.2 304 30.9
CDE04G1860 Ceratophyllum demersum HOM05D006147 ORTHO05D007501 1.8e-36 157.5 298 36.2
BcaB08g34979 Brassica carinata HOM05D006147 ORTHO05D007501 1.7e-34 151.0 144 58.3
BolC2t08257H Brassica oleracea HOM05D006147 ORTHO05D007501 1.1e-33 148.3 120 65.0
BraA07t28491Z Brassica rapa HOM05D006147 ORTHO05D007501 2.1e-32 144.1 102 70.6
arahy.Tifrunner.gnm1.ann1.PBTS15 Arachis hypogaea HOM05D006147 ORTHO05D007501 2.2e-29 134.0 186 41.9
Cc02_g16880 Coffea canephora HOM05D006147 ORTHO05D007501 2.8e-29 133.7 80 77.5
BcaC03g14677 Brassica carinata HOM05D006147 ORTHO05D007501 6.3e-29 132.5 117 60.7
A07p07030 Brassica napus HOM05D006147 ORTHO05D007501 1.9e-25 120.9 102 62.7
arahy.Tifrunner.gnm1.ann1.UB8UIZ Arachis hypogaea HOM05D006147 ORTHO05D007501 4.2e-25 119.8 177 42.9
C02p21170 Brassica napus HOM05D006147 ORTHO05D007501 1.4e-23 114.8 114 56.1
C02p21180 Brassica napus HOM05D006147 ORTHO05D007501 2.6e-22 110.5 66 72.7
arahy.Tifrunner.gnm1.ann1.U5A9T5 Arachis hypogaea HOM05D000321 ORTHO05D000204 2.8e-21 107.1 180 40.6
Duzib132G0670 Durio zibethinus HOM05D006147 ORTHO05D007501 1.7e-18 97.8 122 48.4
SEGI_01868 Sequoiadendron giganteum HOM05D006147 ORTHO05D007501 4.8e-13 79.7 64 62.5
MBI05_g17912_MAGBIO Magnolia biondii HOM05D006147 ORTHO05D007501 2.0e-11 74.3 46 73.9
MELO3C013418.2 Cucumis melo HOM05D006147 ORTHO05D007501 9.5e-09 65.5 59 61.0
AUR62000141 Chenopodium quinoa HOM05D000089 ORTHO05D000104 8.0e-08 62.4 273 25.6
COL.COLO4_26276 Corchorus olitorius HOM05D000089 ORTHO05D000726 8.0e-08 62.4 317 25.2
Hma1.2p1_0224F.1_g094480 Hydrangea macrophylla HOM05D000089 ORTHO05D000726 1.8e-07 61.2 234 28.2
C09p25350 Brassica napus HOM05D000089 ORTHO05D000726 3.0e-07 60.5 329 23.1
AL7G18200 Arabidopsis lyrata HOM05D001625 ORTHO05D008114 8.9e-07 58.9 228 23.7
Lj1g0008117 Lotus japonicus HOM05D001625 ORTHO05D008114 8.9e-07 58.9 222 25.7
Carub.0007s0712 Capsella rubella HOM05D001625 ORTHO05D008114 1.2e-06 58.5 219 23.7
AT5G42800 Arabidopsis thaliana HOM05D000089 ORTHO05D000726 2.0e-06 57.8 331 23.6
BraA03t15233Z Brassica rapa HOM05D001625 ORTHO05D008114 3.4e-06 57.0 236 23.3
Sp7g31070 Schrenkiella parvula HOM05D001625 ORTHO05D008114 3.4e-06 57.0 228 25.0
arahy.Tifrunner.gnm1.ann1.SS1ETW Arachis hypogaea HOM05D001625 ORTHO05D008114 4.4e-06 56.6 221 25.3
ATR0100G004 Amborella trichopoda HOM05D001625 ORTHO05D008114 5.7e-06 56.2 226 25.2
Medtr3g101500 Medicago truncatula HOM05D001625 ORTHO05D008114 5.7e-06 56.2 222 25.2
QL02p005347 Quercus lobata HOM05D001625 ORTHO05D008114 5.7e-06 56.2 223 25.6
SMO172G0178 Selaginella moellendorffii HOM05D000089 ORTHO05D000104 5.7e-06 56.2 248 23.4
A03p61940 Brassica napus HOM05D001625 ORTHO05D008114 7.5e-06 55.8 228 23.2


User provided reference genes

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