Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT11G2682 Cannabis sativa HOM05D005703 ORTHO05D006643 2.7e-172 608.6 317 100.0
FvH4_2g10050 Fragaria vesca HOM05D005703 ORTHO05D006643 1.1e-96 357.5 339 62.5
RcHm_v2.0_Chr6g0266981 Rosa chinensis HOM05D005703 ORTHO05D006643 2.4e-96 356.3 339 62.2
Cpa.g.sc150.43 Carica papaya HOM05D005703 ORTHO05D006643 3.2e-96 355.9 306 66.7
QL11p045612 Quercus lobata HOM05D005703 ORTHO05D006643 2.1e-95 353.2 329 63.5
COL.COLO4_26014 Corchorus olitorius HOM05D005703 ORTHO05D006643 4.6e-95 352.1 339 60.5
GSVIVG01024205001 Vitis vinifera HOM05D005703 ORTHO05D006643 3.0e-94 349.4 339 61.1
Thecc.02G078100 Theobroma cacao HOM05D005703 ORTHO05D006643 1.1e-93 347.4 333 59.8
CiPaw.06G130900 Carya illinoinensis HOM05D005703 ORTHO05D006643 2.5e-93 346.3 342 60.5
Potri.004G160800 Populus trichocarpa HOM05D005703 ORTHO05D006643 4.3e-93 345.5 305 65.6
Prupe.8G088000 Prunus persica HOM05D005703 ORTHO05D006643 4.3e-93 345.5 325 61.5
MD10G1066100 Malus domestica HOM05D005703 ORTHO05D006643 5.6e-93 345.1 342 59.9
Gohir.D12G030600 Gossypium hirsutum HOM05D005703 ORTHO05D006643 6.2e-92 341.7 321 60.7
TWI31G0330 Tripterygium wilfordii HOM05D005703 ORTHO05D006643 1.8e-91 340.1 333 60.7
Atru.chr5.3109 Acer truncatum HOM05D005703 ORTHO05D006643 2.4e-91 339.7 307 65.1
Gorai.008G031500 Gossypium raimondii HOM05D005703 ORTHO05D006643 1.2e-90 337.4 321 60.4
Actinidia02238 Actinidia chinensis HOM05D005703 ORTHO05D006643 3.4e-90 335.9 326 60.4
Manes.11G087800 Manihot esculenta HOM05D005703 ORTHO05D006643 1.3e-89 334.0 324 61.1
Actinidia27862 Actinidia chinensis HOM05D005703 ORTHO05D006643 3.8e-89 332.4 324 60.8
CSS0001334 Camellia sinensis var. sinensis HOM05D005703 ORTHO05D006643 4.9e-89 332.0 290 66.9
Hma1.2p1_0066F.1_g035910 Hydrangea macrophylla HOM05D005703 ORTHO05D006643 1.1e-88 330.9 281 68.3
Nn6g32200 Nelumbo nucifera HOM05D005703 ORTHO05D006643 5.4e-88 328.6 337 59.9
CsaV3_7G000370 Cucumis sativus L. HOM05D005703 ORTHO05D006643 2.7e-87 326.2 326 61.3
FAN15G0097 Fragaria x ananassa HOM05D005703 ORTHO05D006643 2.7e-87 326.2 382 55.0
Cfa005074 Carpinus fangiana HOM05D005703 ORTHO05D006643 4.6e-87 325.5 255 71.8
Sabra04G0107600 Salix brachista HOM05D005703 ORTHO05D006643 1.8e-86 323.6 274 68.6
Aqoxy5G01507 Aquilegia oxysepala HOM05D005703 ORTHO05D006643 2.3e-86 323.2 308 63.0
MELO3C002791.2 Cucumis melo HOM05D005703 ORTHO05D006643 3.0e-86 322.8 301 64.1
Eucgr.D00178 Eucalyptus grandis HOM05D005703 ORTHO05D006643 6.7e-86 321.6 309 61.8
Sed0007704 Sechium edule HOM05D005703 ORTHO05D006643 3.3e-85 319.3 224 76.8
VMungo1127G0812 Vigna mungo HOM05D005703 ORTHO05D006643 3.6e-84 315.8 306 60.8
Ciclev10028680m.g Citrus clementina HOM05D005703 ORTHO05D006643 8.1e-84 314.7 344 56.7
Aa31LG7G15130 Aethionema arabicum HOM05D005703 ORTHO05D001153 1.4e-83 313.9 336 56.8
Sopen01g052320 Solanum pennellii HOM05D005703 ORTHO05D006643 1.8e-83 313.5 328 57.9
Solyc01g110160.4 Solanum lycopersicum HOM05D005703 ORTHO05D006643 2.4e-83 313.2 287 63.1
MSTRG.20056 Avicennia marina HOM05D005703 ORTHO05D006643 3.1e-83 312.8 303 62.0
CARHR112270 Cardamine hirsuta HOM05D005703 ORTHO05D006643 5.3e-83 312.0 318 57.2
Lsat_1_v5_gn_5_125081 Lactuca sativa HOM05D005703 ORTHO05D006643 9.0e-83 311.2 363 55.9
THA.LOC104824803 Tarenaya hassleriana HOM05D005703 ORTHO05D006643 1.5e-82 310.5 306 59.8
ATR0661G148 Amborella trichopoda HOM05D005703 ORTHO05D006643 3.4e-82 309.3 307 59.0
Glyma.11G112900 Glycine max HOM05D005703 ORTHO05D006643 4.5e-82 308.9 277 63.9
ECA234G1754 Erigeron canadensis HOM05D005703 ORTHO05D006643 7.6e-82 308.1 337 57.0
Glyma.12G038800 Glycine max HOM05D005703 ORTHO05D006643 1.3e-81 307.4 290 62.4
PGSC0003DMG400030971 Solanum tuberosum HOM05D005703 ORTHO05D006643 4.9e-81 305.4 297 61.3
Carub.0004s0043 Capsella rubella HOM05D005703 ORTHO05D006643 6.4e-81 305.1 321 56.1
Sp4g00560 Schrenkiella parvula HOM05D005703 ORTHO05D006643 1.4e-80 303.9 318 56.9
Sc14g0002020 Simmondsia chinensis HOM05D005703 ORTHO05D006643 1.4e-80 303.9 338 56.8
HanXRQChr12g0373591 Helianthus annuus HOM05D005703 ORTHO05D006643 3.2e-80 302.8 284 62.7
AL4G10560 Arabidopsis lyrata HOM05D005703 ORTHO05D006643 5.5e-80 302.0 318 55.7
Dinv23475 Davidia involucrata HOM05D005703 ORTHO05D006643 7.1e-80 301.6 221 73.3
Peaxi162Scf00016g00231 Petunia axillaris HOM05D005703 ORTHO05D006643 2.1e-79 300.1 306 60.1
Lalb_Chr03g0025421 Lupinus albus HOM05D005703 ORTHO05D006643 4.6e-79 298.9 295 59.7
Nitab4.5_0011132g0020 Nicotiana tabacum HOM05D005703 ORTHO05D006643 4.6e-79 298.9 267 64.8
Rhsim05G0069500 Rhododendron simsii HOM05D005703 ORTHO05D006643 4.6e-79 298.9 290 58.6
TPR.G16235 Trifolium pratense HOM05D005703 ORTHO05D006643 4.6e-79 298.9 280 61.1
Ca_20918_v3 Cicer arietinum L. HOM05D005703 ORTHO05D006643 6.0e-79 298.5 280 61.4
Lj3g0017018 Lotus japonicus HOM05D005703 ORTHO05D006643 7.9e-79 298.1 291 59.5
Medtr4g071190 Medicago truncatula HOM05D005703 ORTHO05D006643 7.9e-79 298.1 309 58.3
Migut.B00193 Erythranthe guttata HOM05D005703 ORTHO05D006643 1.3e-78 297.4 273 64.5
PSO170G4951 Papaver somniferum HOM05D005703 ORTHO05D006643 3.9e-78 295.8 334 56.0
AT2G21385 Arabidopsis thaliana HOM05D005703 ORTHO05D006643 8.7e-78 294.7 286 58.4
AUR62010417 Chenopodium quinoa HOM05D005703 ORTHO05D006643 1.9e-77 293.5 361 53.7
Os09g0531100 Oryza sativa ssp. japonica HOM05D005703 ORTHO05D006643 3.3e-77 292.7 309 56.0
arahy.Tifrunner.gnm1.ann1.YBLQ63 Arachis hypogaea HOM05D005703 ORTHO05D006643 4.3e-77 292.4 310 57.1
A09p58290 Brassica napus HOM05D005703 ORTHO05D006643 5.6e-77 292.0 315 56.8
AUR62016798 Chenopodium quinoa HOM05D005703 ORTHO05D006643 5.6e-77 292.0 376 51.6
BraA09t41216Z Brassica rapa HOM05D005703 ORTHO05D006643 9.6e-77 291.2 316 56.6
HPP92_025877 Vanilla planifolia HOM05D005703 ORTHO05D006643 2.8e-76 289.7 302 58.3
Psat7g139960 Pisum sativum HOM05D005703 ORTHO05D006643 3.7e-76 289.3 338 55.6
C08p41580 Brassica napus HOM05D005703 ORTHO05D006643 4.8e-76 288.9 314 56.4
BolC8t51720H Brassica oleracea HOM05D005703 ORTHO05D006643 4.8e-76 288.9 288 60.1
Zm00001eb353590 Zea mays HOM05D005703 ORTHO05D006643 1.5e-74 283.9 311 55.0
arahy.Tifrunner.gnm1.ann1.R55P3J Arachis hypogaea HOM05D005703 ORTHO05D006643 3.2e-72 276.2 200 73.0
CDE09G1081 Ceratophyllum demersum HOM05D005703 ORTHO05D006643 9.3e-72 274.6 330 53.6
Phvul.011G040900 Phaseolus vulgaris HOM05D005703 ORTHO05D006643 2.1e-71 273.5 253 62.1
Haze_02308 Corylus avellana HOM05D005703 ORTHO05D006643 3.5e-71 272.7 311 56.3
Thhalv10000241m.g Eutrema salsugineum HOM05D005703 ORTHO05D006643 1.6e-68 263.8 251 61.4
Gohir.A12G041600 Gossypium hirsutum HOM05D005703 ORTHO05D006643 1.9e-64 250.4 181 72.9
Hma1.2p1_0066F.1_g035920 Hydrangea macrophylla HOM05D005703 ORTHO05D006643 2.5e-64 250.0 275 57.8
SalBow6G5125 Salvia bowleyana HOM05D005703 ORTHO05D006643 7.2e-64 248.4 311 53.7
MELO3C013421.2 Cucumis melo HOM05D005703 ORTHO05D006643 7.9e-63 245.0 336 52.1
DCAR_022931 Daucus carota HOM05D005703 ORTHO05D006643 3.0e-62 243.0 337 48.4
Nitab4.5_0002723g0090 Nicotiana tabacum HOM05D005703 ORTHO05D006643 3.9e-62 242.7 322 50.0
SGA_v2.0_scaffold58G20483 Striga asiatica HOM05D005703 ORTHO05D006643 5.1e-62 242.3 301 53.2
Thhalv10005656m.g Eutrema salsugineum HOM05D005703 ORTHO05D006643 4.8e-60 235.7 161 76.4
SMO356G0671 Selaginella moellendorffii HOM05D005703 ORTHO05D006643 1.4e-59 234.2 314 46.5
ClCG02G004580 Citrullus lanatus HOM05D005703 ORTHO05D006643 2.4e-59 233.4 282 56.7
EL10Ac9g21670 Beta vulgaris HOM05D005703 ORTHO05D006643 6.9e-59 231.9 336 47.9
FAN24G3327 Fragaria x ananassa HOM05D005703 ORTHO05D006643 7.7e-58 228.4 339 47.2
FAN20G2472 Fragaria x ananassa HOM05D005703 ORTHO05D006643 1.3e-57 227.6 329 47.7
Mapoly0084s0041 Marchantia polymorpha HOM05D005703 ORTHO05D006643 3.8e-57 226.1 262 51.9
Pp3c22_4620 Physcomitrium patens HOM05D005703 ORTHO05D006643 3.8e-57 226.1 332 45.8
FAN27G2042 Fragaria x ananassa HOM05D005703 ORTHO05D006643 3.2e-56 223.0 329 47.4
SMO290G0004 Selaginella moellendorffii HOM05D005703 ORTHO05D006643 2.7e-55 219.9 275 49.1
SMO290G0013 Selaginella moellendorffii HOM05D005703 ORTHO05D006643 4.6e-55 219.2 271 49.4
Hund00227 Selenicereus undatus HOM05D005703 ORTHO05D006643 4.4e-53 212.6 305 47.9
AagrBONN_evm.TU.Sc2ySwM_228.378 Anthoceros agrestis HOM05D005703 ORTHO05D006643 1.3e-52 211.1 199 58.3
vmacro17444 Vaccinium macrocarpon HOM05D005703 ORTHO05D006643 2.8e-52 209.9 334 44.0
SMO356G0278 Selaginella moellendorffii HOM05D005703 ORTHO05D006643 1.1e-51 208.0 271 48.7
Lj5C191G8 Lonicera japonica HOM05D005703 ORTHO05D006643 6.1e-47 192.2 298 46.6
Cc02_g17090 Coffea canephora HOM05D005703 ORTHO05D006643 1.7e-44 184.1 196 58.2
unitig_0.g54 Utricularia gibba HOM05D005703 ORTHO05D006643 2.4e-43 180.3 196 57.7
BcaB06g27102 Brassica carinata HOM05D005703 ORTHO05D006643 3.2e-40 169.9 122 76.2
BraA01t01909Z Brassica rapa HOM05D005703 ORTHO05D006643 1.7e-36 157.5 198 55.6
MBI01_g29867_MAGBIO Magnolia biondii HOM05D005703 ORTHO05D006643 4.2e-32 142.9 100 78.0
Duzib132G0736 Durio zibethinus HOM05D005703 ORTHO05D006643 3.6e-31 139.8 370 33.5
BolC2t11489H Brassica oleracea HOM05D005703 ORTHO05D006643 3.1e-27 126.7 88 77.3
BcaC01g06448 Brassica carinata HOM05D005703 ORTHO05D006643 1.3e-25 121.3 139 55.4
QL11p045598 Quercus lobata HOM05D005703 ORTHO05D006643 2.9e-25 120.2 69 85.5
C02p54250 Brassica napus HOM05D005703 ORTHO05D006643 1.2e-23 114.8 88 73.9
Cc02_g17080 Coffea canephora HOM05D005703 ORTHO05D006643 1.0e-22 111.7 129 48.1
unitig_0.g53 Utricularia gibba HOM05D005703 ORTHO05D006643 2.3e-22 110.5 72 75.0
MBI01_g29866_MAGBIO Magnolia biondii HOM05D005703 ORTHO05D006643 3.4e-21 106.7 60 83.3
HanXRQChr14g0433731 Helianthus annuus HOM05D005703 ORTHO05D006643 1.8e-19 100.9 62 88.7
CBR_g49480 Chara braunii HOM05D005703 ORTHO05D006643 5.4e-19 99.4 241 31.1
Cre08.g372000 Chlamydomonas reinhardtii HOM05D005703 ORTHO05D006643 9.2e-19 98.6 270 33.0
BcaC04g19425 Brassica carinata HOM05D005703 ORTHO05D006643 3.3e-16 90.1 117 53.8
BolC1t00937H Brassica oleracea HOM05D005703 ORTHO05D006643 5.6e-16 89.4 135 48.9
C01p09750 Brassica napus HOM05D005703 ORTHO05D006643 7.3e-16 89.0 105 55.2
C04p21760 Brassica napus HOM05D005703 ORTHO05D006643 7.3e-16 89.0 106 55.7
C09p55850 Brassica napus HOM05D005703 ORTHO05D006643 9.5e-16 88.6 106 55.7
BolC4t23697H Brassica oleracea HOM05D005703 ORTHO05D006643 3.0e-14 83.6 106 52.8
C03p15450 Brassica napus HOM05D005703 ORTHO05D006643 1.2e-13 81.6 110 47.3
BcaC09g52221 Brassica carinata HOM05D005703 ORTHO05D006643 2.0e-13 80.9 63 69.8
TAR381G1022 Trochodendron aralioides HOM05D005703 ORTHO05D006643 2.6e-13 80.5 86 54.7
Potri.009G121902 Populus trichocarpa HOM05D005703 ORTHO05D006643 1.7e-12 77.8 47 85.1
C03p56740 Brassica napus HOM05D005703 ORTHO05D006643 1.4e-11 74.7 80 56.2
BolC1t00936H Brassica oleracea HOM05D005703 ORTHO05D006643 2.4e-11 73.9 63 65.1
PRCOL_00000952 Prasinoderma coloniale HOM05D005703 ORTHO05D006643 1.6e-10 71.2 240 28.8
AUR62033094 Chenopodium quinoa HOM05D005703 ORTHO05D006643 1.7e-09 67.8 34 91.2
Oeu037764.1 Olea europaea HOM05D005703 ORTHO05D006643 8.6e-09 65.5 34 88.2
CAN.G878.5 Capsicum annuum HOM05D000269 ORTHO05D000216 2.5e-08 63.9 39 74.4
TAR381G0871 Trochodendron aralioides HOM05D005703 ORTHO05D006643 2.5e-08 63.9 129 41.1
Lsat_1_v5_gn_1_61800 Lactuca sativa HOM05D005428 ORTHO05D002547 3.3e-08 63.5 59 62.7


User provided reference genes

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