Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT11G2657 Cannabis sativa HOM05D005104 ORTHO05D006614 2.7e-133 478.8 259 100.0
arahy.Tifrunner.gnm1.ann1.PH7E5N Arachis hypogaea HOM05D005104 ORTHO05D006614 2.4e-81 306.2 261 70.1
arahy.Tifrunner.gnm1.ann1.V9NXIE Arachis hypogaea HOM05D005104 ORTHO05D006614 2.4e-81 306.2 261 69.0
Phvul.002G208000 Phaseolus vulgaris HOM05D005104 ORTHO05D006614 5.8e-80 301.6 263 66.2
Haze_10684 Corylus avellana HOM05D005104 ORTHO05D006614 4.2e-78 295.4 201 76.6
VMungo0251G0802 Vigna mungo HOM05D005104 ORTHO05D006614 1.6e-77 293.5 265 64.5
Cfa005608 Carpinus fangiana HOM05D005104 ORTHO05D006614 2.3e-76 289.7 204 74.5
Eucgr.I02668 Eucalyptus grandis HOM05D005104 ORTHO05D006614 2.3e-76 289.7 263 60.8
Sed0008592 Sechium edule HOM05D005104 ORTHO05D006614 8.7e-76 287.7 261 66.7
Psat7g098720 Pisum sativum HOM05D005104 ORTHO05D006614 1.1e-75 287.3 262 62.2
CiPaw.05G036500 Carya illinoinensis HOM05D005104 ORTHO05D006614 1.5e-75 287.0 261 66.7
Medtr4g094252 Medicago truncatula HOM05D005104 ORTHO05D006614 1.5e-75 287.0 265 62.3
Lj4g0020611 Lotus japonicus HOM05D005104 ORTHO05D006614 1.3e-74 283.9 262 62.2
Manes.14G166400 Manihot esculenta HOM05D005104 ORTHO05D006614 1.6e-74 283.5 263 63.5
MELO3C018651.2 Cucumis melo HOM05D005104 ORTHO05D006614 2.8e-74 282.7 261 62.1
Glyma.08G073500 Glycine max HOM05D005104 ORTHO05D006614 2.8e-74 282.7 263 66.5
Lalb_Chr10g0097741 Lupinus albus HOM05D005104 ORTHO05D006614 6.2e-74 281.6 263 61.6
Glyma.05G118400 Glycine max HOM05D005104 ORTHO05D006614 1.4e-73 280.4 266 65.8
Dinv24198 Davidia involucrata HOM05D005104 ORTHO05D006614 3.1e-73 279.3 272 59.9
Duzib248G0158 Durio zibethinus HOM05D005104 ORTHO05D006614 4.0e-73 278.9 266 61.3
TPR.G10460 Trifolium pratense HOM05D005104 ORTHO05D006614 2.6e-72 276.2 210 70.5
PGR142G2776 Punica granatum HOM05D005104 ORTHO05D006614 4.5e-72 275.4 264 60.6
CsaV3_7G006430 Cucumis sativus L. HOM05D005104 ORTHO05D006614 1.7e-71 273.5 262 61.5
Ciclev10029197m.g Citrus clementina HOM05D005104 ORTHO05D006614 4.9e-71 271.9 206 68.9
Thecc.02G140100 Theobroma cacao HOM05D005104 ORTHO05D006614 4.9e-71 271.9 261 64.8
COL.COLO4_20953 Corchorus olitorius HOM05D005104 ORTHO05D006614 1.9e-70 270.0 261 60.9
ClCG09G015340 Citrullus lanatus HOM05D005104 ORTHO05D006614 2.5e-70 269.6 283 58.3
Atru.chr6.1089 Acer truncatum HOM05D005104 ORTHO05D006614 3.2e-70 269.2 197 73.1
Atru.chr6.1109 Acer truncatum HOM05D005104 ORTHO05D006614 3.2e-70 269.2 197 73.1
Actinidia28058 Actinidia chinensis HOM05D005104 ORTHO05D006614 5.1e-68 261.9 271 57.6
Gohir.A04G113100 Gossypium hirsutum HOM05D005104 ORTHO05D006614 5.1e-68 261.9 262 62.6
Ca_18345_v3 Cicer arietinum L. HOM05D005104 ORTHO05D006614 8.7e-68 261.2 285 56.1
Gohir.A04G112960 Gossypium hirsutum HOM05D005104 ORTHO05D006614 4.3e-67 258.8 199 70.9
Hma1.2p1_0522F.1_g171600 Hydrangea macrophylla HOM05D005104 ORTHO05D006614 1.3e-66 257.3 204 70.1
Oeu007957.1 Olea europaea HOM05D005104 ORTHO05D006614 1.3e-66 257.3 262 56.9
GSVIVG01003083001 Vitis vinifera HOM05D005104 ORTHO05D006614 2.8e-66 256.1 273 57.5
CSS0037720 Camellia sinensis var. sinensis HOM05D005104 ORTHO05D006614 4.8e-66 255.4 270 58.5
Gohir.D04G154400 Gossypium hirsutum HOM05D005104 ORTHO05D006614 6.2e-66 255.0 262 61.8
Gorai.012G141700 Gossypium raimondii HOM05D005104 ORTHO05D006614 6.2e-66 255.0 262 61.8
SalBow6G6298 Salvia bowleyana HOM05D005104 ORTHO05D006614 6.2e-66 255.0 267 57.3
SalBow6G6009 Salvia bowleyana HOM05D005104 ORTHO05D006614 8.2e-66 254.6 267 57.3
TAR628G1132 Trochodendron aralioides HOM05D005104 ORTHO05D006614 1.4e-65 253.8 269 57.6
QL11p020542 Quercus lobata HOM05D005104 ORTHO05D006614 2.4e-65 253.1 283 58.0
MD10G1051500 Malus domestica HOM05D005104 ORTHO05D006614 1.2e-64 250.8 200 68.0
Prupe.8G062400 Prunus persica HOM05D005104 ORTHO05D006614 2.0e-64 250.0 208 64.9
Aqoxy6G00597 Aquilegia oxysepala HOM05D005104 ORTHO05D006614 2.2e-63 246.5 273 59.3
vmacro19925 Vaccinium macrocarpon HOM05D005104 ORTHO05D006614 2.9e-63 246.1 311 53.4
Nn1g05321 Nelumbo nucifera HOM05D005104 ORTHO05D006614 1.9e-62 243.4 269 56.1
RcHm_v2.0_Chr6g0273461 Rosa chinensis HOM05D005104 ORTHO05D006614 1.9e-62 243.4 208 63.0
Migut.N01063 Erythranthe guttata HOM05D005104 ORTHO05D006614 3.2e-62 242.7 260 56.9
Potri.003G023601 Populus trichocarpa HOM05D005104 ORTHO05D006614 4.2e-62 242.3 198 66.7
MSTRG.27791 Avicennia marina HOM05D005104 ORTHO05D006614 9.3e-62 241.1 264 57.2
Lsat_1_v5_gn_5_107140 Lactuca sativa HOM05D005104 ORTHO05D006614 2.1e-61 240.0 213 63.4
TWI59G0245 Tripterygium wilfordii HOM05D005104 ORTHO05D006614 2.1e-61 240.0 268 55.6
ECA234G0341 Erigeron canadensis HOM05D005104 ORTHO05D006614 2.7e-61 239.6 187 69.0
HanXRQChr10g0295831 Helianthus annuus HOM05D005104 ORTHO05D006614 2.7e-61 239.6 261 57.1
SGA_v2.0_scaffold45G17311 Striga asiatica HOM05D005104 ORTHO05D006614 3.5e-61 239.2 266 55.6
Rhsim05G0108500 Rhododendron simsii HOM05D005104 ORTHO05D006614 4.6e-61 238.8 214 63.6
FvH4_2g12710 Fragaria vesca HOM05D005104 ORTHO05D006614 1.0e-60 237.7 262 59.2
FAN27G3119 Fragaria x ananassa HOM05D005104 ORTHO05D006614 3.0e-60 236.1 262 57.3
Sopen10g017460 Solanum pennellii HOM05D005104 ORTHO05D006614 3.0e-60 236.1 219 61.6
Solyc10g047220.2 Solanum lycopersicum HOM05D005104 ORTHO05D006614 3.9e-60 235.7 196 66.3
PGSC0003DMG400017693 Solanum tuberosum HOM05D005104 ORTHO05D006614 1.9e-59 233.4 219 61.6
Cpa.g.sc42.74 Carica papaya HOM05D005104 ORTHO05D006614 2.8e-58 229.6 274 53.3
PSO781G0266 Papaver somniferum HOM05D005104 ORTHO05D006614 4.8e-58 228.8 271 53.5
FAN20G1981 Fragaria x ananassa HOM05D005104 ORTHO05D006614 1.8e-57 226.9 262 57.6
DCAR_001791 Daucus carota HOM05D005104 ORTHO05D006614 2.4e-57 226.5 276 51.8
Sp2g27220 Schrenkiella parvula HOM05D005104 ORTHO05D006614 2.0e-56 223.4 262 50.8
BcaB07g29727 Brassica carinata HOM05D005104 ORTHO05D006614 3.4e-56 222.6 262 50.8
HPP92_006000 Vanilla planifolia HOM05D005104 ORTHO05D006614 3.4e-56 222.6 263 51.0
BcaC02g09479 Brassica carinata HOM05D002012 ORTHO05D001992 4.5e-56 222.2 213 57.3
Peaxi162Scf00003g03543 Petunia axillaris HOM05D005104 ORTHO05D006614 7.7e-56 221.5 199 64.3
Thhalv10004872m.g Eutrema salsugineum HOM05D005104 ORTHO05D006614 1.0e-55 221.1 262 50.8
AL8G41430 Arabidopsis lyrata HOM05D005104 ORTHO05D006614 1.3e-55 220.7 263 50.2
PSO541G4381 Papaver somniferum HOM05D005104 ORTHO05D006614 6.5e-55 218.4 269 52.0
Cc02_g21630 Coffea canephora HOM05D005104 ORTHO05D006614 8.5e-55 218.0 197 63.5
BcaB02g09781 Brassica carinata HOM05D005104 ORTHO05D006614 1.1e-54 217.6 209 57.4
AT5G64160 Arabidopsis thaliana HOM05D005104 ORTHO05D006614 1.4e-54 217.2 263 49.0
BcaC01g02673 Brassica carinata HOM05D005104 ORTHO05D006614 1.4e-54 217.2 185 62.7
C09p58340 Brassica napus HOM05D005104 ORTHO05D006614 1.4e-54 217.2 223 56.1
BolC9t58698H Brassica oleracea HOM05D005104 ORTHO05D006614 1.4e-54 217.2 223 56.1
Carub.0008s2495 Capsella rubella HOM05D005104 ORTHO05D006614 1.4e-54 217.2 263 49.4
BolC3t18470H Brassica oleracea HOM05D005104 ORTHO05D006614 1.9e-54 216.9 184 62.0
C03p62090 Brassica napus HOM05D005104 ORTHO05D006614 2.5e-54 216.5 184 62.0
A06p30880 Brassica napus HOM05D005104 ORTHO05D006614 3.2e-54 216.1 184 62.0
C09p58390 Brassica napus HOM05D005104 ORTHO05D006614 4.2e-54 215.7 219 56.2
CDE10G0587 Ceratophyllum demersum HOM05D005104 ORTHO05D006614 4.2e-54 215.7 268 48.9
Sabra01G0157800 Salix brachista HOM05D005104 ORTHO05D006614 5.5e-54 215.3 291 50.5
Oeu026158.1 Olea europaea HOM05D005104 ORTHO05D006614 2.7e-53 213.0 176 67.0
CARHR278070 Cardamine hirsuta HOM05D005104 ORTHO05D006614 3.9e-52 209.1 262 49.2
C06p26800 Brassica napus HOM05D005104 ORTHO05D006614 8.8e-52 208.0 218 54.6
Aa31LG1G17770 Aethionema arabicum HOM05D005104 ORTHO05D006614 2.0e-51 206.8 276 47.8
BcaC08g45071 Brassica carinata HOM05D005104 ORTHO05D006614 2.0e-51 206.8 218 54.1
C02p46090 Brassica napus HOM05D005104 ORTHO05D006614 2.5e-51 206.5 218 55.0
BolC6t37855H Brassica oleracea HOM05D005104 ORTHO05D006614 3.3e-51 206.1 218 54.1
Hma1.2p1_0522F.1_g171590 Hydrangea macrophylla HOM05D005104 ORTHO05D006614 5.7e-51 205.3 222 58.1
ATR0564G397 Amborella trichopoda HOM05D005104 ORTHO05D006614 9.7e-51 204.5 272 50.7
Hund06391 Selenicereus undatus HOM05D005104 ORTHO05D006614 4.8e-50 202.2 261 50.6
BraA03t13815Z Brassica rapa HOM05D005104 ORTHO05D006614 2.6e-48 196.4 215 51.2
SEGI_35517 Sequoiadendron giganteum HOM05D005104 ORTHO05D006614 7.7e-48 194.9 271 48.3
Os02g0753200 Oryza sativa ssp. japonica HOM05D005104 ORTHO05D006614 1.4e-46 190.7 182 61.5
AUR62010117 Chenopodium quinoa HOM05D005104 ORTHO05D006614 2.5e-46 189.9 193 57.0
AUR62013112 Chenopodium quinoa HOM05D005104 ORTHO05D006614 4.2e-46 189.1 184 58.7
GSVIVG01013334001 Vitis vinifera HOM05D005104 ORTHO05D006614 9.4e-46 188.0 150 70.0
FAN24G3378 Fragaria x ananassa HOM05D005104 ORTHO05D006614 1.2e-45 187.6 133 73.7
GSVIVG01003087001 Vitis vinifera HOM05D005104 ORTHO05D006614 2.7e-45 186.4 150 69.3
Lj5A240T40 Lonicera japonica HOM05D005104 ORTHO05D006614 2.0e-43 180.3 136 70.6
MBI02_g08741_MAGBIO Magnolia biondii HOM05D005104 ORTHO05D006614 3.3e-43 179.5 138 69.6
Zm00001eb194200 Zea mays HOM05D005104 ORTHO05D006614 1.8e-41 173.7 182 56.0
Zm00001eb255190 Zea mays HOM05D005104 ORTHO05D006614 2.9e-39 166.4 265 43.0
Ah.01g009520 Amaranthus hybridus HOM05D005104 ORTHO05D006614 1.9e-38 163.7 260 43.5
GSVIVG01003093001 Vitis vinifera HOM05D005104 ORTHO05D006614 4.2e-38 162.5 121 73.6
Pp3c18_21190 Physcomitrium patens HOM05D005104 ORTHO05D006614 2.2e-34 150.2 204 46.6
Mapoly0096s0033 Marchantia polymorpha HOM05D005104 ORTHO05D006614 3.7e-34 149.4 232 43.5
Nitab4.5_0000078g0030 Nicotiana tabacum HOM05D005104 ORTHO05D006614 3.7e-34 149.4 212 49.1
AagrBONN_evm.TU.Sc2ySwM_117.984 Anthoceros agrestis HOM05D005104 ORTHO05D006614 7.7e-32 141.7 262 40.1
SMO117G0229 Selaginella moellendorffii HOM05D005104 ORTHO05D006614 7.7e-32 141.7 198 48.0
Sc08g0003350 Simmondsia chinensis HOM05D005104 ORTHO05D006614 7.7e-32 141.7 133 59.4
unitig_22.g6836 Utricularia gibba HOM05D001058 ORTHO05D000911 5.5e-30 135.6 195 47.2
CAN.G1.36 Capsicum annuum HOM05D005104 ORTHO05D006614 1.7e-23 114.0 193 48.7
THA.LOC104818435 Tarenaya hassleriana HOM05D005104 ORTHO05D006614 5.0e-23 112.5 194 43.3
BolC4t25904H Brassica oleracea HOM05D005104 ORTHO05D006614 1.9e-22 110.5 73 72.6
Nitab4.5_0005015g0050 Nicotiana tabacum HOM05D005104 ORTHO05D006614 3.2e-22 109.8 176 47.7
EL10Ac9g21466 Beta vulgaris HOM05D005104 ORTHO05D006614 2.1e-21 107.1 74 74.3
CDE10G1356 Ceratophyllum demersum HOM05D005104 ORTHO05D006614 8.8e-20 101.7 196 40.3
Duzib132G1169 Durio zibethinus HOM05D005104 ORTHO05D006614 2.7e-16 90.1 155 41.3
Hma1.2p1_0516F.1_g170490 Hydrangea macrophylla HOM05D005104 ORTHO05D006614 5.9e-16 89.0 107 48.6
CBR_g47116 Chara braunii HOM05D005104 ORTHO05D006614 1.1e-14 84.7 221 33.9
A02p26040 Brassica napus HOM05D005104 ORTHO05D006614 4.2e-14 82.8 99 51.5
arahy.Tifrunner.gnm1.ann1.H2YG1F Arachis hypogaea HOM05D005104 ORTHO05D006614 9.5e-14 81.6 59 72.9
Potri.001G206032 Populus trichocarpa HOM05D005104 ORTHO05D006614 2.3e-12 77.0 56 73.2
EL10Ac9g21465 Beta vulgaris HOM05D005104 ORTHO05D006614 3.7e-10 69.7 246 32.9
C07p45690 Brassica napus HOM05D005104 ORTHO05D021970 4.1e-09 66.2 107 40.2
BolC6t38485H Brassica oleracea HOM05D005104 ORTHO05D006614 2.7e-08 63.5 111 37.8
A10p06060 Brassica napus HOM05D005104 ORTHO05D006614 3.5e-08 63.2 84 46.4
C03p52730 Brassica napus HOM05D005104 ORTHO05D021970 3.5e-08 63.2 110 39.1
C09p03790 Brassica napus HOM05D005104 ORTHO05D006614 4.5e-08 62.8 107 38.3
C05p26840 Brassica napus HOM05D005104 ORTHO05D006614 1.5e-06 57.8 107 37.4


User provided reference genes

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