Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT11G2572 Cannabis sativa HOM05D004717 ORTHO05D005636 5.4e-110 401.0 199 100.0
Gohir.A12G132100 Gossypium hirsutum HOM05D004717 ORTHO05D005636 4.5e-80 301.6 199 72.9
Gorai.008G146900 Gossypium raimondii HOM05D004717 ORTHO05D005636 7.6e-80 300.8 198 73.7
MD16G1003900 Malus domestica HOM05D004717 ORTHO05D005636 1.3e-79 300.1 199 75.4
QL04p036080 Quercus lobata HOM05D004717 ORTHO05D005636 1.4e-78 296.6 197 72.1
Duzib132G0983 Durio zibethinus HOM05D004717 ORTHO05D005636 3.2e-78 295.4 198 73.2
RcHm_v2.0_Chr4g0446911 Rosa chinensis HOM05D004717 ORTHO05D005636 3.2e-78 295.4 199 71.9
Thecc.02G155400 Theobroma cacao HOM05D004717 ORTHO05D005636 7.1e-78 294.3 198 73.2
QL04p036464 Quercus lobata HOM05D004717 ORTHO05D005636 9.3e-78 293.9 197 71.6
Atru.chr11.1095 Acer truncatum HOM05D004717 ORTHO05D005636 1.2e-77 293.5 198 72.2
Lsat_1_v5_gn_9_25720 Lactuca sativa HOM05D004717 ORTHO05D005636 1.6e-77 293.1 199 69.3
FAN12G1282 Fragaria x ananassa HOM05D004717 ORTHO05D005636 2.7e-77 292.4 199 70.9
Gohir.D12G135700 Gossypium hirsutum HOM05D004717 ORTHO05D005636 2.7e-77 292.4 182 75.8
MD13G1003500 Malus domestica HOM05D004717 ORTHO05D005636 2.7e-77 292.4 199 73.9
Prupe.1G348900 Prunus persica HOM05D004717 ORTHO05D005636 2.7e-77 292.4 199 71.4
Potri.005G089500 Populus trichocarpa HOM05D004717 ORTHO05D005636 3.5e-77 292.0 199 72.9
Manes.08G039100 Manihot esculenta HOM05D004717 ORTHO05D005636 4.6e-77 291.6 198 71.2
TWI74G1267 Tripterygium wilfordii HOM05D004717 ORTHO05D005636 1.0e-76 290.4 199 69.3
Lj5g0015714 Lotus japonicus HOM05D004717 ORTHO05D005636 1.3e-76 290.0 199 71.4
Potri.007G074500 Populus trichocarpa HOM05D004717 ORTHO05D005636 3.0e-76 288.9 199 70.9
Sabra07G0063200 Salix brachista HOM05D004717 ORTHO05D005636 3.0e-76 288.9 198 71.2
MELO3C022525.2 Cucumis melo HOM05D004717 ORTHO05D005636 6.7e-76 287.7 199 68.8
Sed0025396 Sechium edule HOM05D004717 ORTHO05D005636 8.7e-76 287.3 198 68.7
TPR.G28016 Trifolium pratense HOM05D004717 ORTHO05D005636 2.5e-75 285.8 199 69.3
Glyma.16G218800 Glycine max HOM05D004717 ORTHO05D005636 5.7e-75 284.6 199 70.4
Haze_11783 Corylus avellana HOM05D004717 ORTHO05D005636 9.6e-75 283.9 198 69.7
Ciclev10016775m.g Citrus clementina HOM05D004717 ORTHO05D005636 1.3e-74 283.5 199 70.9
CsaV3_6G005870 Cucumis sativus L. HOM05D004717 ORTHO05D005636 1.3e-74 283.5 199 67.8
Dinv02673 Davidia involucrata HOM05D004717 ORTHO05D005636 1.3e-74 283.5 198 71.2
Sed0013821 Sechium edule HOM05D004717 ORTHO05D005636 1.6e-74 283.1 199 67.3
Medtr6g075160 Medicago truncatula HOM05D004717 ORTHO05D005636 2.1e-74 282.7 199 69.8
Lj6P708T54 Lonicera japonica HOM05D004717 ORTHO05D005636 2.8e-74 282.3 199 68.8
CiPaw.06G062200 Carya illinoinensis HOM05D004717 ORTHO05D005636 4.8e-74 281.6 199 69.3
Oeu003437.1 Olea europaea HOM05D004717 ORTHO05D005636 4.8e-74 281.6 199 66.3
vmacro15638 Vaccinium macrocarpon HOM05D004717 ORTHO05D005636 4.8e-74 281.6 198 66.2
GSVIVG01038782001 Vitis vinifera HOM05D004717 ORTHO05D005636 4.8e-74 281.6 195 70.3
Cc11_g03470 Coffea canephora HOM05D004717 ORTHO05D005636 6.3e-74 281.2 199 68.3
Lj2g0014996 Lotus japonicus HOM05D004717 ORTHO05D005636 6.3e-74 281.2 199 68.8
PGR142G2311 Punica granatum HOM05D004717 ORTHO05D005636 6.3e-74 281.2 199 67.8
arahy.Tifrunner.gnm1.ann1.TS1LPS Arachis hypogaea HOM05D004717 ORTHO05D005636 8.2e-74 280.8 199 66.3
HanXRQChr08g0237151 Helianthus annuus HOM05D004717 ORTHO05D005636 8.2e-74 280.8 198 68.2
Rhsim02G0075200 Rhododendron simsii HOM05D004717 ORTHO05D005636 8.2e-74 280.8 199 66.8
CiPaw.05G171400 Carya illinoinensis HOM05D004717 ORTHO05D005636 1.1e-73 280.4 199 68.3
CiPaw.05G171500 Carya illinoinensis HOM05D004717 ORTHO05D005636 1.1e-73 280.4 199 68.3
arahy.Tifrunner.gnm1.ann1.8YZR55 Arachis hypogaea HOM05D004717 ORTHO05D005636 1.4e-73 280.0 199 66.3
Lalb_Chr24g0398391 Lupinus albus HOM05D004717 ORTHO05D005636 2.4e-73 279.3 199 68.8
GSVIVG01026135001 Vitis vinifera HOM05D004717 ORTHO05D005636 2.4e-73 279.3 199 68.3
Oeu033041.1 Olea europaea HOM05D004717 ORTHO05D005636 3.1e-73 278.9 199 66.3
Phvul.004G144800 Phaseolus vulgaris HOM05D004717 ORTHO05D005636 5.3e-73 278.1 199 67.8
Psat1g123480 Pisum sativum HOM05D004717 ORTHO05D005636 6.9e-73 277.7 199 68.3
Hma1.2p1_0513F.1_g169470 Hydrangea macrophylla HOM05D004717 ORTHO05D005636 9.0e-73 277.3 198 68.7
PGR142G4258 Punica granatum HOM05D004717 ORTHO05D005636 9.0e-73 277.3 197 67.5
TPR.G9035 Trifolium pratense HOM05D004717 ORTHO05D005636 9.0e-73 277.3 199 67.8
AUR62001133 Chenopodium quinoa HOM05D004717 ORTHO05D005636 1.2e-72 276.9 196 69.9
ClCG06G000120 Citrullus lanatus HOM05D004717 ORTHO05D005636 1.2e-72 276.9 189 68.3
Lj6P714T12 Lonicera japonica HOM05D004717 ORTHO05D005636 1.2e-72 276.9 180 72.2
Nn2g12497 Nelumbo nucifera HOM05D004717 ORTHO05D005636 1.2e-72 276.9 200 67.0
CSS0046676 Camellia sinensis var. sinensis HOM05D004717 ORTHO05D005636 2.0e-72 276.2 199 67.8
DCAR_027608 Daucus carota HOM05D004717 ORTHO05D005636 2.6e-72 275.8 180 69.4
ECA247G4036 Erigeron canadensis HOM05D004717 ORTHO05D005636 2.6e-72 275.8 199 68.3
Lj3g0022258 Lotus japonicus HOM05D004717 ORTHO05D005636 2.6e-72 275.8 199 67.8
VMungo0464G0417 Vigna mungo HOM05D004717 ORTHO05D005636 2.6e-72 275.8 199 65.3
Aa31LG3G18230 Aethionema arabicum HOM05D006471 ORTHO05D005636 3.4e-72 275.4 198 66.7
AL6G34580 Arabidopsis lyrata HOM05D004717 ORTHO05D005636 4.5e-72 275.0 198 65.7
Peaxi162Scf00681g00024 Petunia axillaris HOM05D004717 ORTHO05D005636 1.0e-71 273.9 198 64.6
AL6G18770 Arabidopsis lyrata HOM05D004717 ORTHO05D005636 2.9e-71 272.3 199 63.3
Nitab4.5_0004808g0010 Nicotiana tabacum HOM05D004717 ORTHO05D005636 2.9e-71 272.3 196 64.3
Carub.0006s0723 Capsella rubella HOM05D004717 ORTHO05D005636 3.8e-71 271.9 199 64.8
SGA_v2.0_scaffold62G21625 Striga asiatica HOM05D004717 ORTHO05D005636 5.0e-71 271.6 197 64.5
Eucgr.G02601 Eucalyptus grandis HOM05D004717 ORTHO05D005636 6.5e-71 271.2 199 66.3
Thhalv10014725m.g Eutrema salsugineum HOM05D004717 ORTHO05D005636 6.5e-71 271.2 199 64.3
Ah.01g024100 Amaranthus hybridus HOM05D004717 ORTHO05D005636 8.5e-71 270.8 199 67.3
AT5G23320 Arabidopsis thaliana HOM05D004717 ORTHO05D005636 1.1e-70 270.4 198 64.1
AT5G08335 Arabidopsis thaliana HOM05D004717 ORTHO05D005636 1.4e-70 270.0 199 63.8
Aqoxy6G00094 Aquilegia oxysepala HOM05D004717 ORTHO05D005636 2.5e-70 269.2 195 65.6
Carub.0006s2109 Capsella rubella HOM05D004717 ORTHO05D005636 2.5e-70 269.2 198 62.6
Thecc.05G241200 Theobroma cacao HOM05D004717 ORTHO05D005636 2.5e-70 269.2 187 69.5
Solyc04g009010.2 Solanum lycopersicum HOM05D004717 ORTHO05D005636 3.2e-70 268.9 199 63.8
MSTRG.7889 Avicennia marina HOM05D004717 ORTHO05D005636 4.2e-70 268.5 199 65.3
THA.LOC104800704 Tarenaya hassleriana HOM05D004717 ORTHO05D005636 4.2e-70 268.5 198 64.1
Ah.08g214600 Amaranthus hybridus HOM05D004717 ORTHO05D005636 5.5e-70 268.1 195 69.7
CAN.G274.13 Capsicum annuum HOM05D004717 ORTHO05D005636 5.5e-70 268.1 198 63.6
Lalb_Chr16g0386851 Lupinus albus HOM05D004717 ORTHO05D005636 5.5e-70 268.1 197 67.0
Nitab4.5_0004979g0110 Nicotiana tabacum HOM05D004717 ORTHO05D005636 5.5e-70 268.1 198 62.6
CARHR190220 Cardamine hirsuta HOM05D004717 ORTHO05D005636 7.2e-70 267.7 193 64.2
BraA03t09724Z Brassica rapa HOM05D004717 ORTHO05D005636 1.2e-69 266.9 199 63.3
PGSC0003DMG400011510 Solanum tuberosum HOM05D004717 ORTHO05D005636 1.2e-69 266.9 199 63.3
C03p04250 Brassica napus HOM05D004717 ORTHO05D005636 1.6e-69 266.5 199 62.8
BolC3t12957H Brassica oleracea HOM05D004717 ORTHO05D005636 1.6e-69 266.5 199 62.8
EL10Ac7g17906 Beta vulgaris HOM05D004717 ORTHO05D005636 2.7e-69 265.8 188 68.1
A03p03770 Brassica napus HOM05D004717 ORTHO05D005636 2.7e-69 265.8 197 63.5
Eucgr.G02666 Eucalyptus grandis HOM05D004717 ORTHO05D005636 2.7e-69 265.8 199 64.3
Gohir.A11G227800 Gossypium hirsutum HOM05D004717 ORTHO05D005636 2.7e-69 265.8 185 67.0
unitig_8.g3169 Utricularia gibba HOM05D004717 ORTHO05D005636 2.7e-69 265.8 199 64.3
AUR62012906 Chenopodium quinoa HOM05D004717 ORTHO05D005636 3.6e-69 265.4 199 65.8
Gohir.D11G240300 Gossypium hirsutum HOM05D004717 ORTHO05D005636 4.6e-69 265.0 185 67.0
Gorai.007G253700 Gossypium raimondii HOM05D004717 ORTHO05D005636 4.6e-69 265.0 185 67.0
SGA_v2.0_scaffold8G04231 Striga asiatica HOM05D004717 ORTHO05D005636 6.1e-69 264.6 199 65.8
BcaB01g05612 Brassica carinata HOM05D004717 ORTHO05D005636 1.3e-68 263.5 199 63.8
Duzib177G0848 Durio zibethinus HOM05D004717 ORTHO05D005636 1.3e-68 263.5 187 68.4
Migut.L01402 Erythranthe guttata HOM05D004717 ORTHO05D005636 3.9e-68 261.9 199 59.8
CARHR204740 Cardamine hirsuta HOM05D004717 ORTHO05D005636 5.1e-68 261.5 199 62.3
Lj3P847T27 Lonicera japonica HOM05D004717 ORTHO05D005636 8.7e-68 260.8 182 68.7
GSVIVG01038778001 Vitis vinifera HOM05D004717 ORTHO05D005636 1.9e-67 259.6 199 65.3
PSO782G0831 Papaver somniferum HOM05D004717 ORTHO05D005636 3.3e-67 258.8 200 63.5
Duzib106G0072 Durio zibethinus HOM05D004717 ORTHO05D005636 7.4e-67 257.7 187 65.8
Sc17g0002110 Simmondsia chinensis HOM05D004717 ORTHO05D005636 9.7e-67 257.3 193 65.3
EL10Ac9g21225 Beta vulgaris HOM05D004717 ORTHO05D005636 2.8e-66 255.8 199 63.3
CDE02G0493 Ceratophyllum demersum HOM05D004717 ORTHO05D005636 4.8e-66 255.0 199 60.3
Sc08g0003750 Simmondsia chinensis HOM05D004717 ORTHO05D005636 8.2e-66 254.2 198 63.1
Lsat_1_v5_gn_5_170960 Lactuca sativa HOM05D004717 ORTHO05D005636 1.2e-64 250.4 199 59.8
MBI14_g08135_MAGBIO Magnolia biondii HOM05D004717 ORTHO05D005636 2.0e-64 249.6 197 63.5
Migut.E00157 Erythranthe guttata HOM05D004717 ORTHO05D005636 3.4e-64 248.8 192 60.9
SHI07248 Sapria himalayana HOM05D004717 ORTHO05D005636 1.1e-62 243.8 199 59.8
HanXRQChr01g0011051 Helianthus annuus HOM05D004717 ORTHO05D005636 7.2e-62 241.1 199 59.8
HPP92_018371 Vanilla planifolia HOM05D004717 ORTHO05D005636 1.2e-61 240.4 188 60.6
Sp6g34610 Schrenkiella parvula HOM05D004717 ORTHO05D005636 7.9e-61 237.7 179 61.5
Cpa.g.sc59.26 Carica papaya HOM05D004717 ORTHO05D005636 1.4e-57 226.9 191 61.8
Actinidia35903 Actinidia chinensis HOM05D004717 ORTHO05D005636 4.1e-57 225.3 182 59.9
SMO117G0139 Selaginella moellendorffii HOM05D004717 ORTHO05D005636 1.2e-56 223.8 177 59.3
DCAR_023472 Daucus carota HOM05D004717 ORTHO05D005636 3.4e-56 222.2 144 71.5
Pp3c3_35430 Physcomitrium patens HOM05D004717 ORTHO05D005636 1.0e-55 220.7 185 55.7
PSO170G2864 Papaver somniferum HOM05D004717 ORTHO05D005636 6.5e-55 218.0 171 63.7
Zm00001eb144100 Zea mays HOM05D004717 ORTHO05D005636 5.5e-54 214.9 151 65.6
Aa31LG11G2780 Aethionema arabicum HOM05D004717 ORTHO05D005636 7.2e-54 214.5 144 64.6
AUR62011721 Chenopodium quinoa HOM05D004717 ORTHO05D005636 6.7e-52 208.0 143 65.0
HanXRQChr17g0556721 Helianthus annuus HOM05D004717 ORTHO05D005636 1.5e-51 206.8 156 64.1
CDE04G3142 Ceratophyllum demersum HOM05D004717 ORTHO05D005636 3.3e-51 205.7 170 60.0
Mapoly0062s0094 Marchantia polymorpha HOM05D004717 ORTHO05D005636 1.7e-50 203.4 183 49.2
ATR0580G192 Amborella trichopoda HOM05D004717 ORTHO05D005636 2.2e-50 203.0 144 60.4
Rhsim02G0074800 Rhododendron simsii HOM05D004717 ORTHO05D005636 4.2e-46 188.7 198 51.0
Sopen04g004190 Solanum pennellii HOM05D004717 ORTHO05D005636 5.2e-44 181.8 114 70.2
SalBow2G2042 Salvia bowleyana HOM05D004717 ORTHO05D005636 7.7e-40 167.9 199 46.7
COL.COLO4_20086 Corchorus olitorius HOM05D004717 ORTHO05D005636 1.5e-38 163.7 98 72.4
TAR381G0283 Trochodendron aralioides HOM05D004717 ORTHO05D005636 1.5e-38 163.7 127 65.4
MCO05G386 Micromonas commoda HOM05D004717 ORTHO05D005636 1.6e-37 160.2 184 46.7
Glyma.09G169200 Glycine max HOM05D004717 ORTHO05D005636 2.1e-37 159.8 199 47.2
PRCOL_00002165 Prasinoderma coloniale HOM05D004717 ORTHO05D005636 1.2e-32 144.1 186 45.7
Haze_27496 Corylus avellana HOM05D004717 ORTHO05D005636 2.1e-29 133.3 187 39.6
ECA247G3377 Erigeron canadensis HOM05D004717 ORTHO05D005636 1.6e-24 117.1 68 76.5
SEGI_39005 Sequoiadendron giganteum HOM05D004717 ORTHO05D005636 1.7e-23 113.6 74 62.2
AagrBONN_evm.TU.Sc2ySwM_344.2327 Anthoceros agrestis HOM05D004717 ORTHO05D005636 6.1e-21 105.1 109 50.5
Cfa021666 Carpinus fangiana HOM05D004717 ORTHO05D005636 6.1e-21 105.1 187 33.2
Ca_23673_v3 Cicer arietinum L. HOM05D004717 ORTHO05D005636 2.3e-20 103.2 137 43.8
Hund05579 Selenicereus undatus HOM05D004717 ORTHO05D005636 3.0e-20 102.8 118 46.6
Os04g0602900 Oryza sativa ssp. japonica HOM05D004717 ORTHO05D005636 4.4e-19 99.0 71 62.0
AagrBONN_evm.TU.Sc2ySwM_117.4144 Anthoceros agrestis HOM05D004717 ORTHO05D005636 7.5e-19 98.2 108 49.1
C07p44230 Brassica napus HOM05D006667 ORTHO05D008387 9.2e-17 91.3 195 33.8
RhsimUnG0160700 Rhododendron simsii HOM05D004717 ORTHO05D005636 2.5e-14 83.2 58 69.0
Eucgr.D01405 Eucalyptus grandis HOM05D004717 ORTHO05D005636 3.3e-14 82.8 63 55.6


User provided reference genes

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