Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT11G2548 Cannabis sativa HOM05D005463 ORTHO05D006900 4.6e-206 721.1 386 100.0
Prupe.2G005900 Prunus persica HOM05D005463 ORTHO05D006900 7.9e-158 560.8 384 79.4
RcHm_v2.0_Chr1g0314251 Rosa chinensis HOM05D005463 ORTHO05D006900 3.3e-156 555.4 388 76.0
RcHm_v2.0_Chr6g0277781 Rosa chinensis HOM05D005463 ORTHO05D006900 1.5e-153 546.6 385 75.3
FAN06G3192 Fragaria x ananassa HOM05D005463 ORTHO05D006900 3.4e-153 545.4 389 76.3
CiPaw.13G001800 Carya illinoinensis HOM05D005463 ORTHO05D006900 1.6e-150 536.6 388 74.5
FAN03G0244 Fragaria x ananassa HOM05D005463 ORTHO05D006900 2.1e-150 536.2 386 76.2
Cfa010722 Carpinus fangiana HOM05D005463 ORTHO05D006900 1.4e-149 533.5 387 75.2
Haze_03251 Corylus avellana HOM05D005463 ORTHO05D006900 8.8e-149 530.8 387 74.7
QL04p003263 Quercus lobata HOM05D005463 ORTHO05D006900 2.0e-148 529.6 386 75.1
MD07G1002800 Malus domestica HOM05D005463 ORTHO05D006900 5.7e-148 528.1 393 74.0
CAN.G1393.12 Capsicum annuum HOM05D005463 ORTHO05D006900 9.7e-148 527.3 385 74.0
MELO3C023520.2 Cucumis melo HOM05D005463 ORTHO05D006900 1.3e-147 526.9 386 75.9
Solyc01g086650.3 Solanum lycopersicum HOM05D005463 ORTHO05D006900 1.3e-147 526.9 385 73.0
Sopen01g033670 Solanum pennellii HOM05D005463 ORTHO05D006900 1.3e-147 526.9 385 73.0
CSS0012415 Camellia sinensis var. sinensis HOM05D005463 ORTHO05D006900 2.2e-147 526.2 386 74.9
TWI77G0271 Tripterygium wilfordii HOM05D005463 ORTHO05D006900 3.7e-147 525.4 391 74.4
ClCG09G003850 Citrullus lanatus HOM05D005463 ORTHO05D006900 6.3e-147 524.6 386 76.2
Nitab4.5_0006866g0010 Nicotiana tabacum HOM05D005463 ORTHO05D006900 1.1e-146 523.9 385 73.8
Thecc.01G415300 Theobroma cacao HOM05D005463 ORTHO05D006900 4.1e-146 521.9 380 77.1
CSS0041052 Camellia sinensis var. sinensis HOM05D005463 ORTHO05D006900 5.3e-146 521.5 386 74.4
CsaV3_7G031380 Cucumis sativus L. HOM05D005463 ORTHO05D006900 9.1e-146 520.8 386 75.1
THA.LOC104819056 Tarenaya hassleriana HOM05D005463 ORTHO05D006900 9.1e-146 520.8 388 72.4
Nitab4.5_0002239g0050 Nicotiana tabacum HOM05D005463 ORTHO05D006900 1.2e-145 520.4 385 73.2
TAR623G0821 Trochodendron aralioides HOM05D005463 ORTHO05D006900 1.2e-145 520.4 387 72.1
Sabra16G0135300 Salix brachista HOM05D005463 ORTHO05D006900 3.5e-145 518.8 384 72.7
Manes.10G148700 Manihot esculenta HOM05D005463 ORTHO05D006900 4.5e-145 518.5 386 75.6
Potri.001G226900 Populus trichocarpa HOM05D005463 ORTHO05D006900 7.7e-145 517.7 384 72.4
PGSC0003DMG400025254 Solanum tuberosum HOM05D005463 ORTHO05D006900 7.7e-145 517.7 383 72.6
Dinv43914 Davidia involucrata HOM05D005463 ORTHO05D006900 1.3e-144 516.9 387 73.9
TAR369G0415 Trochodendron aralioides HOM05D005463 ORTHO05D006900 1.7e-144 516.5 384 73.2
AL7G48760 Arabidopsis lyrata HOM05D005463 ORTHO05D006900 2.2e-144 516.2 386 73.8
Carub.0007s3465 Capsella rubella HOM05D005463 ORTHO05D006900 2.9e-144 515.8 387 73.4
AT5G40850 Arabidopsis thaliana HOM05D005463 ORTHO05D006900 3.8e-144 515.4 387 74.2
Gohir.D10G064800 Gossypium hirsutum HOM05D005463 ORTHO05D006900 1.1e-143 513.8 371 75.5
Ciclev10031826m.g Citrus clementina HOM05D005463 ORTHO05D006900 4.2e-143 511.9 393 73.5
Lsat_1_v5_gn_4_46300 Lactuca sativa HOM05D005463 ORTHO05D006900 5.5e-143 511.5 381 73.2
Sp7g01080 Schrenkiella parvula HOM05D005463 ORTHO05D006900 3.6e-142 508.8 391 72.4
Sed0008391 Sechium edule HOM05D005463 ORTHO05D006900 6.1e-142 508.1 384 75.5
BcaB06g27564 Brassica carinata HOM05D005463 ORTHO05D006900 1.0e-141 507.3 391 71.6
Gorai.011G068800 Gossypium raimondii HOM05D005463 ORTHO05D006900 1.0e-141 507.3 372 74.7
Migut.B01346 Erythranthe guttata HOM05D005463 ORTHO05D006900 1.8e-141 506.5 387 70.8
A04p13900 Brassica napus HOM05D005463 ORTHO05D006900 2.3e-141 506.1 392 71.4
BraA04t17055Z Brassica rapa HOM05D005463 ORTHO05D006900 2.3e-141 506.1 392 71.4
BcaC02g08999 Brassica carinata HOM05D005463 ORTHO05D006900 3.0e-141 505.8 388 71.6
BolC4t26367H Brassica oleracea HOM05D005463 ORTHO05D006900 3.0e-141 505.8 388 71.6
Thhalv10027799m.g Eutrema salsugineum HOM05D005463 ORTHO05D006900 4.0e-141 505.4 393 71.2
Duzib114G0804 Durio zibethinus HOM05D005463 ORTHO05D006900 6.7e-141 504.6 346 78.3
C04p47660 Brassica napus HOM05D005463 ORTHO05D006900 1.2e-140 503.8 391 71.1
DCAR_006305 Daucus carota HOM05D005463 ORTHO05D006900 2.0e-140 503.1 369 73.2
Aa31sc48G90 Aethionema arabicum HOM05D005463 ORTHO05D006900 2.6e-140 502.7 388 71.1
Lalb_Chr25g0283441 Lupinus albus HOM05D005463 ORTHO05D006900 3.3e-140 502.3 391 72.1
BcaB02g07924 Brassica carinata HOM05D005463 ORTHO05D006900 7.5e-140 501.1 392 71.7
SGA_v2.0_scaffold4G02241 Striga asiatica HOM05D005463 ORTHO05D006900 9.7e-140 500.7 384 71.1
EL10Ac1g02324 Beta vulgaris HOM05D005463 ORTHO05D006900 2.2e-139 499.6 394 71.1
Lj7A567T29 Lonicera japonica HOM05D005463 ORTHO05D006900 4.1e-138 495.4 389 71.2
Oeu047540.1 Olea europaea HOM05D005463 ORTHO05D006900 4.1e-138 495.4 395 70.4
AUR62034961 Chenopodium quinoa HOM05D005463 ORTHO05D006900 9.1e-138 494.2 389 71.5
Eucgr.H00541 Eucalyptus grandis HOM05D005463 ORTHO05D006900 1.2e-137 493.8 384 72.4
PGR083G1038 Punica granatum HOM05D005463 ORTHO05D006900 2.7e-137 492.7 395 68.9
Ah.05g166840 Amaranthus hybridus HOM05D005463 ORTHO05D006900 4.5e-137 491.9 392 70.4
Nn7g36051 Nelumbo nucifera HOM05D005463 ORTHO05D006900 7.7e-137 491.1 363 73.3
Peaxi162Scf00058g00512 Petunia axillaris HOM05D005463 ORTHO05D006900 2.2e-136 489.6 383 70.8
CARHR213670 Cardamine hirsuta HOM05D005463 ORTHO05D006900 6.5e-136 488.0 397 69.0
Cc02_g27320 Coffea canephora HOM05D005463 ORTHO05D006900 1.1e-135 487.3 385 70.1
VMungo1080G0018 Vigna mungo HOM05D005463 ORTHO05D006900 1.5e-135 486.9 384 70.8
PSO541G2837 Papaver somniferum HOM05D005463 ORTHO05D006900 2.5e-135 486.1 382 71.5
vmacro13633 Vaccinium macrocarpon HOM05D005463 ORTHO05D006900 3.2e-135 485.7 389 69.2
Aqoxy2G00060 Aquilegia oxysepala HOM05D005463 ORTHO05D006900 5.5e-135 485.0 395 69.4
Rhsim07G0052500 Rhododendron simsii HOM05D005463 ORTHO05D006900 9.4e-135 484.2 413 67.6
Hund11459 Selenicereus undatus HOM05D005463 ORTHO05D006900 1.2e-134 483.8 385 70.9
Psat5g207280 Pisum sativum HOM05D005463 ORTHO05D006900 2.1e-134 483.0 386 68.7
FvH4_7g00480 Fragaria vesca HOM05D005463 ORTHO05D006900 2.7e-134 482.6 342 77.2
Glyma.08G150800 Glycine max HOM05D005463 ORTHO05D006900 2.7e-134 482.6 384 69.0
Medtr7g034345 Medicago truncatula HOM05D005463 ORTHO05D006900 4.7e-134 481.9 387 68.2
Glyma.15G270200 Glycine max HOM05D005463 ORTHO05D006900 8.0e-134 481.1 384 68.8
Phvul.005G038200 Phaseolus vulgaris HOM05D005463 ORTHO05D006900 8.0e-134 481.1 384 71.1
MBI19_g42082_MAGBIO Magnolia biondii HOM05D005463 ORTHO05D006900 1.0e-133 480.7 375 71.2
MBI07_g21780_MAGBIO Magnolia biondii HOM05D005463 ORTHO05D006900 1.8e-133 479.9 375 70.9
FAN10G2111 Fragaria x ananassa HOM05D005463 ORTHO05D006900 2.3e-133 479.6 342 76.9
Actinidia32326 Actinidia chinensis HOM05D005463 ORTHO05D006900 8.8e-133 477.6 369 71.0
Duzib138G0896 Durio zibethinus HOM05D005463 ORTHO05D006900 2.6e-132 476.1 360 73.9
AUR62035771 Chenopodium quinoa HOM05D005463 ORTHO05D006900 3.4e-132 475.7 368 72.6
Ca_22203_v3 Cicer arietinum L. HOM05D005463 ORTHO05D006900 7.5e-132 474.6 384 68.2
Lj3g0018047 Lotus japonicus HOM05D005463 ORTHO05D006900 9.8e-132 474.2 348 73.6
CDE09G0814 Ceratophyllum demersum HOM05D005463 ORTHO05D006900 1.4e-130 470.3 383 67.4
TPR.G12169 Trifolium pratense HOM05D005463 ORTHO05D006900 1.8e-130 469.9 384 68.0
Sc20g0006350 Simmondsia chinensis HOM05D005463 ORTHO05D006900 3.1e-130 469.2 385 68.8
SGA_v2.0_scaffold95G28785 Striga asiatica HOM05D005463 ORTHO05D006900 5.4e-130 468.4 414 64.3
COL.COLO4_23908 Corchorus olitorius HOM05D000259 ORTHO05D000155 5.9e-129 464.9 345 73.3
TWI74G0716 Tripterygium wilfordii HOM05D005463 ORTHO05D006900 7.7e-129 464.5 336 75.0
ECA234G3252 Erigeron canadensis HOM05D005463 ORTHO05D006900 1.1e-127 460.7 383 66.8
GSVIVG01032030001 Vitis vinifera HOM05D005463 ORTHO05D006900 1.9e-127 459.9 280 85.0
HanXRQChr16g0520501 Helianthus annuus HOM05D005463 ORTHO05D006900 1.0e-125 454.1 381 66.1
ATR0709G016 Amborella trichopoda HOM05D005463 ORTHO05D006900 3.4e-124 449.1 365 66.8
Manes.07G002600 Manihot esculenta HOM05D005463 ORTHO05D006900 1.3e-123 447.2 341 73.3
Zm00001eb159150 Zea mays HOM05D005463 ORTHO05D006900 2.4e-122 443.0 343 71.1
MBI19_g47932_MAGBIO Magnolia biondii HOM05D005463 ORTHO05D006900 3.1e-122 442.6 375 67.5
SalBow4G1191 Salvia bowleyana HOM05D005463 ORTHO05D006900 5.9e-121 438.3 337 70.6
arahy.Tifrunner.gnm1.ann1.35ND81 Arachis hypogaea HOM05D005463 ORTHO05D006900 1.8e-117 426.8 298 76.2
Zm00001eb358930 Zea mays HOM05D005463 ORTHO05D006900 8.3e-115 417.9 344 69.2
HPP92_020287 Vanilla planifolia HOM05D005463 ORTHO05D006900 9.2e-114 414.5 291 73.5
Mapoly0087s0054 Marchantia polymorpha HOM05D005463 ORTHO05D006900 1.6e-110 403.7 294 68.7
Pp3c10_8730 Physcomitrium patens HOM05D005463 ORTHO05D006900 2.8e-110 402.9 356 61.2
Cpa.g.sc1133.2 Carica papaya HOM05D005463 ORTHO05D006900 3.1e-109 399.4 389 62.0
Medtr3g026780 Medicago truncatula HOM05D005463 ORTHO05D006900 1.1e-103 380.9 235 83.8
CBR_g4488 Chara braunii HOM05D005463 ORTHO05D006900 1.2e-102 377.5 287 65.9
SMO174G0240 Selaginella moellendorffii HOM05D005463 ORTHO05D006900 1.6e-102 377.1 335 61.2
unitig_61.g26444 Utricularia gibba HOM05D005463 ORTHO05D006900 6.8e-93 345.1 284 66.5
ATR1100G030 Amborella trichopoda HOM05D005463 ORTHO05D006900 9.9e-92 341.3 340 56.8
Os01g0631200 Oryza sativa ssp. japonica HOM05D005463 ORTHO05D006900 1.7e-91 340.5 206 84.0
Cre09.g396401 Chlamydomonas reinhardtii HOM05D005463 ORTHO05D006900 1.2e-81 307.8 255 63.9
PRCOL_00005728 Prasinoderma coloniale HOM05D005463 ORTHO05D006900 1.0e-80 304.7 267 58.1
MCO12G109 Micromonas commoda HOM05D005463 ORTHO05D006900 9.6e-79 298.1 318 51.3
MBI10_g23170_MAGBIO Magnolia biondii HOM05D005463 ORTHO05D006900 2.4e-77 293.5 238 68.1
Gohir.A10G063300 Gossypium hirsutum HOM05D005463 ORTHO05D006900 1.5e-76 290.8 234 70.1
TPR.G33976 Trifolium pratense HOM05D005463 ORTHO05D006900 2.2e-75 287.0 281 58.0
SEGI_24059 Sequoiadendron giganteum HOM05D005463 ORTHO05D006900 1.7e-67 260.8 185 72.4
Dinv43913 Davidia involucrata HOM05D005463 ORTHO05D006900 1.1e-63 248.1 221 66.1
RcHm_v2.0_Chr4g0408791 Rosa chinensis HOM05D005463 ORTHO05D006900 1.8e-61 240.7 156 82.7
AagrBONN_evm.TU.Sc2ySwM_344.3224 Anthoceros agrestis HOM05D005463 ORTHO05D006900 2.6e-52 210.3 218 56.0
Prupe.I005100 Prunus persica HOM05D005463 ORTHO05D006900 9.4e-50 201.8 116 86.2
Hma1.2p1_1089F.1_g255720 Hydrangea macrophylla HOM05D005463 ORTHO05D006900 1.4e-48 198.0 199 60.3
arahy.Tifrunner.gnm1.ann1.UWT5DF Arachis hypogaea HOM05D005463 ORTHO05D006900 9.7e-47 191.8 109 89.0
Oeu010361.1 Olea europaea HOM05D005463 ORTHO05D006900 2.2e-46 190.7 201 57.2
RcHm_v2.0_Chr6g0260851 Rosa chinensis HOM05D005463 ORTHO05D006900 3.1e-45 186.8 137 73.7
MSTRG.17019 Avicennia marina HOM05D005463 ORTHO05D006900 1.1e-42 178.3 196 54.1
MSTRG.17060 Avicennia marina HOM05D005463 ORTHO05D006900 1.2e-41 174.9 196 53.6
SEGI_02284 Sequoiadendron giganteum HOM05D005463 ORTHO05D006900 3.5e-36 156.8 109 72.5
Cfa024173 Carpinus fangiana HOM05D005463 ORTHO05D006900 1.1e-31 141.7 237 37.6
Cre12.g538650 Chlamydomonas reinhardtii HOM05D005463 ORTHO05D044100 3.1e-29 133.7 256 35.5
Haze_27481 Corylus avellana HOM05D005463 ORTHO05D006900 2.6e-23 114.0 164 39.6
Nn3g19661 Nelumbo nucifera HOM05D005463 ORTHO05D006900 5.7e-23 112.8 191 43.5
RcHm_v2.0_Chr4g0408811 Rosa chinensis HOM05D005463 ORTHO05D006900 5.7e-23 112.8 121 58.7
ATR0709G040 Amborella trichopoda HOM05D005463 ORTHO05D006900 7.5e-23 112.5 156 44.9
CAN.G762.7 Capsicum annuum HOM05D005463 ORTHO05D006900 2.7e-20 104.0 80 70.0
MCO11G851 Micromonas commoda HOM05D005463 ORTHO05D044100 5.0e-19 99.8 241 30.3
RcHm_v2.0_Chr1g0375041 Rosa chinensis HOM05D005463 ORTHO05D006900 3.2e-18 97.1 50 94.0
MBI14_g30707_MAGBIO Magnolia biondii HOM05D005463 ORTHO05D006900 1.0e-16 92.0 65 72.3
CAN.G244.9 Capsicum annuum HOM05D005463 ORTHO05D006900 1.9e-10 71.2 99 45.5


User provided reference genes

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