Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT11G2537 Cannabis sativa HOM05D003698 ORTHO05D004320 3.9e-100 368.2 199 100.0
CANSAT25G0181 Cannabis sativa HOM05D003698 ORTHO05D004320 1.4e-41 173.7 82 100.0
CANSAT56G2897 Cannabis sativa HOM05D003698 ORTHO05D004320 2.0e-19 100.1 44 95.5
MD07G1141700 Malus domestica HOM05D003698 ORTHO05D004320 4.4e-19 99.0 44 93.2
Atru.chr5.444 Acer truncatum HOM05D003698 ORTHO05D004320 1.3e-18 97.4 44 90.9
CiPaw.01G057600 Carya illinoinensis HOM05D003698 ORTHO05D004320 1.3e-18 97.4 44 93.2
ClCG11G000500 Citrullus lanatus HOM05D003698 ORTHO05D004320 1.3e-18 97.4 44 90.9
MELO3C026482.2 Cucumis melo HOM05D003698 ORTHO05D004320 1.3e-18 97.4 44 90.9
VMungo1383G3090 Vigna mungo HOM05D003698 ORTHO05D004320 1.3e-18 97.4 44 93.2
Cpa.g.sc170.35 Carica papaya HOM05D003698 ORTHO05D004320 1.7e-18 97.1 44 90.9
Cfa003959 Carpinus fangiana HOM05D003698 ORTHO05D004320 1.7e-18 97.1 44 90.9
Haze_05811 Corylus avellana HOM05D003698 ORTHO05D004320 1.7e-18 97.1 44 90.9
Eucgr.E00184 Eucalyptus grandis HOM05D003698 ORTHO05D004320 1.7e-18 97.1 44 90.9
MD01G1053400 Malus domestica HOM05D003698 ORTHO05D004320 1.7e-18 97.1 44 90.9
Aqoxy7G00375 Aquilegia oxysepala HOM05D003698 ORTHO05D004320 2.9e-18 96.3 44 90.9
arahy.Tifrunner.gnm1.ann1.0R79PA Arachis hypogaea HOM05D003698 ORTHO05D004320 3.7e-18 95.9 44 90.9
arahy.Tifrunner.gnm1.ann1.51RIH8 Arachis hypogaea HOM05D003698 ORTHO05D004320 3.7e-18 95.9 44 90.9
COL.COLO4_12672 Corchorus olitorius HOM05D003698 ORTHO05D004320 3.7e-18 95.9 44 88.6
CsaV3_5G014110 Cucumis sativus L. HOM05D003698 ORTHO05D004320 3.7e-18 95.9 44 88.6
FvH4_7g13630 Fragaria vesca HOM05D003698 ORTHO05D004320 3.7e-18 95.9 44 88.6
FAN01G1997 Fragaria x ananassa HOM05D003698 ORTHO05D004320 3.7e-18 95.9 44 88.6
FAN03G0966 Fragaria x ananassa HOM05D003698 ORTHO05D004320 3.7e-18 95.9 44 88.6
FAN06G0259 Fragaria x ananassa HOM05D003698 ORTHO05D004320 3.7e-18 95.9 44 88.6
FAN10G2510 Fragaria x ananassa HOM05D004612 ORTHO05D004940 3.7e-18 95.9 44 88.6
PSO478G0134 Papaver somniferum HOM05D003698 ORTHO05D004320 3.7e-18 95.9 44 88.6
PSO782G3808 Papaver somniferum HOM05D003698 ORTHO05D004320 3.7e-18 95.9 44 88.6
QL08p049567 Quercus lobata HOM05D003698 ORTHO05D004320 3.7e-18 95.9 44 90.9
Sed0025976 Sechium edule HOM05D003698 ORTHO05D004320 3.7e-18 95.9 44 88.6
Ciclev10024269m.g Citrus clementina HOM05D003698 ORTHO05D004320 4.9e-18 95.5 44 88.6
ECA236G4925 Erigeron canadensis HOM05D003698 ORTHO05D004320 4.9e-18 95.5 43 90.7
Manes.05G037500 Manihot esculenta HOM05D003698 ORTHO05D004320 4.9e-18 95.5 44 88.6
Psat3g111000 Pisum sativum HOM05D003698 ORTHO05D004320 4.9e-18 95.5 44 90.9
Potri.014G080300 Populus trichocarpa HOM05D003698 ORTHO05D004320 4.9e-18 95.5 44 88.6
Potri.014G080500 Populus trichocarpa HOM05D003698 ORTHO05D004320 4.9e-18 95.5 44 88.6
Sabra14G0058400 Salix brachista HOM05D003698 ORTHO05D004320 4.9e-18 95.5 44 88.6
CSS0014093 Camellia sinensis var. sinensis HOM05D003698 ORTHO05D004320 6.4e-18 95.1 44 88.6
CSS0016921 Camellia sinensis var. sinensis HOM05D003698 ORTHO05D004320 6.4e-18 95.1 44 88.6
HanXRQChr06g0169891 Helianthus annuus HOM05D003698 ORTHO05D004320 6.4e-18 95.1 43 90.7
Prupe.8G033900 Prunus persica HOM05D003698 ORTHO05D004320 6.4e-18 95.1 44 88.6
Dinv43781 Davidia involucrata HOM05D003698 ORTHO05D004320 8.3e-18 94.7 44 90.9
Dinv43783 Davidia involucrata HOM05D003698 ORTHO05D004320 8.3e-18 94.7 44 90.9
Glyma.09G262400 Glycine max HOM05D003698 ORTHO05D004320 8.3e-18 94.7 44 90.9
Gohir.A12G104900 Gossypium hirsutum HOM05D003698 ORTHO05D004320 8.3e-18 94.7 44 86.4
Gohir.D12G108800 Gossypium hirsutum HOM05D003698 ORTHO05D004320 8.3e-18 94.7 44 86.4
Gorai.008G117900 Gossypium raimondii HOM05D003698 ORTHO05D004320 8.3e-18 94.7 44 86.4
Lj1g0021860 Lotus japonicus HOM05D003698 ORTHO05D004320 8.3e-18 94.7 44 90.9
Medtr7g076670 Medicago truncatula HOM05D003698 ORTHO05D004320 8.3e-18 94.7 44 90.9
Phvul.008G068100 Phaseolus vulgaris HOM05D003698 ORTHO05D004320 8.3e-18 94.7 44 90.9
Prupe.2G162400 Prunus persica HOM05D003698 ORTHO05D004320 8.3e-18 94.7 44 88.6
Duzib133G0563 Durio zibethinus HOM05D003698 ORTHO05D004320 1.1e-17 94.4 44 86.4
Glyma.18G229800 Glycine max HOM05D003698 ORTHO05D004320 1.1e-17 94.4 44 88.6
Gohir.A08G129900 Gossypium hirsutum HOM05D003698 ORTHO05D004320 1.1e-17 94.4 43 90.7
Gorai.004G157100 Gossypium raimondii HOM05D003698 ORTHO05D004320 1.1e-17 94.4 43 90.7
RcHm_v2.0_Chr1g0353671 Rosa chinensis HOM05D003698 ORTHO05D004320 1.1e-17 94.4 44 86.4
Thecc.01G363600 Theobroma cacao HOM05D003698 ORTHO05D004320 1.1e-17 94.4 44 86.4
arahy.Tifrunner.gnm1.ann1.L2MSK1 Arachis hypogaea HOM05D003698 ORTHO05D004320 1.4e-17 94.0 43 90.7
Peaxi162Scf00397g00424 Petunia axillaris HOM05D003698 ORTHO05D004320 1.4e-17 94.0 44 86.4
Solyc05g048760.3 Solanum lycopersicum HOM05D003698 ORTHO05D004320 1.4e-17 94.0 44 86.4
Solyc08g008670.3 Solanum lycopersicum HOM05D003698 ORTHO05D004320 1.4e-17 94.0 44 86.4
Sopen05g028080 Solanum pennellii HOM05D003698 ORTHO05D004320 1.4e-17 94.0 44 86.4
Sopen08g004500 Solanum pennellii HOM05D003698 ORTHO05D004320 1.4e-17 94.0 44 86.4
PGSC0003DMG400021636 Solanum tuberosum HOM05D003698 ORTHO05D004320 1.4e-17 94.0 44 86.4
ATR0680G146 Amborella trichopoda HOM05D003698 ORTHO05D004320 1.8e-17 93.6 44 88.6
HanXRQChr04g0121661 Helianthus annuus HOM05D003698 ORTHO05D004320 1.8e-17 93.6 43 88.4
TAR629G2702 Trochodendron aralioides HOM05D003698 ORTHO05D004320 1.8e-17 93.6 44 86.4
CDE05G2621 Ceratophyllum demersum HOM05D003698 ORTHO05D004320 2.4e-17 93.2 44 88.6
Ca_07888_v3 Cicer arietinum L. HOM05D003698 ORTHO05D004320 2.4e-17 93.2 44 88.6
DCAR_008599 Daucus carota HOM05D003698 ORTHO05D004320 2.4e-17 93.2 43 90.7
Nn1g01429 Nelumbo nucifera HOM05D003698 ORTHO05D004320 2.4e-17 93.2 44 88.6
Actinidia09997 Actinidia chinensis HOM05D003698 ORTHO05D004320 3.2e-17 92.8 44 88.6
MSTRG.4868 Avicennia marina HOM05D003698 ORTHO05D004320 3.2e-17 92.8 44 88.6
Gohir.D08G151400 Gossypium hirsutum HOM05D003698 ORTHO05D004320 3.2e-17 92.8 43 88.4
Lsat_1_v5_gn_7_5261 Lactuca sativa HOM05D003698 ORTHO05D004320 3.2e-17 92.8 43 88.4
Lj7A516T66 Lonicera japonica HOM05D003698 ORTHO05D004320 3.2e-17 92.8 44 86.4
Manes.01G259900 Manihot esculenta HOM05D003698 ORTHO05D004320 3.2e-17 92.8 44 86.4
SalBow5G4069 Salvia bowleyana HOM05D003698 ORTHO05D004320 3.2e-17 92.8 43 88.4
GSVIVG01026838001 Vitis vinifera HOM05D003698 ORTHO05D004320 3.2e-17 92.8 44 86.4
Eucgr.E00182 Eucalyptus grandis HOM05D003698 ORTHO05D004320 4.1e-17 92.4 45 88.9
Lalb_Chr04g0256721 Lupinus albus HOM05D003698 ORTHO05D004320 4.1e-17 92.4 45 91.1
Nitab4.5_0010110g0030 Nicotiana tabacum HOM05D003698 ORTHO05D004320 4.1e-17 92.4 43 88.4
Peaxi162Scf00246g01118 Petunia axillaris HOM05D003698 ORTHO05D004320 4.1e-17 92.4 44 84.1
Solyc05g046340.2 Solanum lycopersicum HOM05D003698 ORTHO05D004320 4.1e-17 92.4 44 84.1
Sopen05g027620 Solanum pennellii HOM05D003698 ORTHO05D004320 4.1e-17 92.4 44 84.1
PGSC0003DMG400013702 Solanum tuberosum HOM05D003698 ORTHO05D004320 4.1e-17 92.4 44 84.1
TWI59G0409 Tripterygium wilfordii HOM05D003698 ORTHO05D004320 4.1e-17 92.4 44 88.6
TWI59G0439 Tripterygium wilfordii HOM05D003698 ORTHO05D004320 4.1e-17 92.4 48 81.2
RhsimUnG0002300 Rhododendron simsii HOM05D003698 ORTHO05D004320 5.4e-17 92.0 48 83.3
Zm00001eb065790 Zea mays HOM05D003698 ORTHO05D004320 5.4e-17 92.0 44 84.1
CSS0039842 Camellia sinensis var. sinensis HOM05D003698 ORTHO05D004320 7.0e-17 91.7 44 86.4
Lj9A580G54 Lonicera japonica HOM05D003698 ORTHO05D004320 7.0e-17 91.7 44 88.6
MBI18_g09776_MAGBIO Magnolia biondii HOM05D003698 ORTHO05D004320 7.0e-17 91.7 44 84.1
Nitab4.5_0010827g0020 Nicotiana tabacum HOM05D003698 ORTHO05D004320 7.0e-17 91.7 44 84.1
TWI14G1008 Tripterygium wilfordii HOM05D003698 ORTHO05D004320 7.0e-17 91.7 44 86.4
CAN.G134.78 Capsicum annuum HOM05D003698 ORTHO05D004320 9.2e-17 91.3 44 84.1
Os04g0682300 Oryza sativa ssp. japonica HOM05D003698 ORTHO05D004320 9.2e-17 91.3 44 84.1
SMO367G1007 Selaginella moellendorffii HOM05D003698 ORTHO05D004320 9.2e-17 91.3 44 84.1
Nn6g33536 Nelumbo nucifera HOM05D003698 ORTHO05D004320 1.2e-16 90.9 80 58.8
Nitab4.5_0001702g0210 Nicotiana tabacum HOM05D003698 ORTHO05D004320 1.2e-16 90.9 44 84.1
Cc02_g37580 Coffea canephora HOM05D003698 ORTHO05D004320 1.6e-16 90.5 44 84.1
SGA_v2.0_scaffold11G05655 Striga asiatica HOM05D003698 ORTHO05D004320 1.6e-16 90.5 43 88.4
CSS0025539 Camellia sinensis var. sinensis HOM05D003698 ORTHO05D004320 2.0e-16 90.1 44 84.1
CiPaw.02G028200 Carya illinoinensis HOM05D003698 ORTHO05D004320 2.0e-16 90.1 45 86.7
SGA_v2.0_scaffold43G16443 Striga asiatica HOM05D003698 ORTHO05D004320 2.0e-16 90.1 43 88.4
PGR044G0179 Punica granatum HOM05D003698 ORTHO05D004320 2.7e-16 89.7 43 86.0
PGSC0003DMG400005806 Solanum tuberosum HOM05D003698 ORTHO05D004320 2.7e-16 89.7 44 84.1
Cre14.g626900 Chlamydomonas reinhardtii HOM05D003698 ORTHO05D004320 4.6e-16 89.0 44 81.8
Hma1.2p1_0033F.1_g020410 Hydrangea macrophylla HOM05D003698 ORTHO05D004320 4.6e-16 89.0 44 84.1
Rhsim07G0018200 Rhododendron simsii HOM05D003698 ORTHO05D004320 4.6e-16 89.0 44 84.1
Aa31LG1G27240 Aethionema arabicum HOM05D003698 ORTHO05D004320 5.9e-16 88.6 44 81.8
Dinv32446 Davidia involucrata HOM05D003698 ORTHO05D004320 5.9e-16 88.6 44 84.1
PGR042G0708 Punica granatum HOM05D003698 ORTHO05D004320 7.8e-16 88.2 43 83.7
SEGI_40114 Sequoiadendron giganteum HOM05D003698 ORTHO05D004320 7.8e-16 88.2 45 82.2
Oeu014677.1 Olea europaea HOM05D003698 ORTHO05D004320 1.3e-15 87.4 44 81.8
CDE08G1212 Ceratophyllum demersum HOM05D003698 ORTHO05D004320 1.7e-15 87.0 44 84.1
SHI30460 Sapria himalayana HOM05D003698 ORTHO05D004320 1.7e-15 87.0 44 79.5
Ah.13g077050 Amaranthus hybridus HOM05D003698 ORTHO05D004320 2.3e-15 86.7 44 79.5
AL4G44990 Arabidopsis lyrata HOM05D003698 ORTHO05D004320 2.3e-15 86.7 44 79.5
AT2G45790 Arabidopsis thaliana HOM05D003698 ORTHO05D004320 2.3e-15 86.7 44 79.5
BcaB01g03252 Brassica carinata HOM05D003698 ORTHO05D004320 2.3e-15 86.7 44 79.5
BcaB02g09006 Brassica carinata HOM05D003698 ORTHO05D004320 2.3e-15 86.7 44 79.5
BcaC01g05105 Brassica carinata HOM05D003698 ORTHO05D004320 2.3e-15 86.7 44 79.5
BcaC02g07054 Brassica carinata HOM05D003698 ORTHO05D004320 2.3e-15 86.7 44 79.5
BcaC02g12181 Brassica carinata HOM05D003698 ORTHO05D004320 2.3e-15 86.7 44 79.5
A03p25370 Brassica napus HOM05D003698 ORTHO05D004320 2.3e-15 86.7 44 79.5
A04p34040 Brassica napus HOM05D003698 ORTHO05D004320 2.3e-15 86.7 44 79.5
A05p05780 Brassica napus HOM05D003698 ORTHO05D004320 2.3e-15 86.7 44 79.5
C03p30280 Brassica napus HOM05D003698 ORTHO05D004320 2.3e-15 86.7 44 79.5
C04p06720 Brassica napus HOM05D003698 ORTHO05D004320 2.3e-15 86.7 44 79.5
C04p71840 Brassica napus HOM05D003698 ORTHO05D004320 2.3e-15 86.7 44 79.5
BolC3t15377H Brassica oleracea HOM05D003698 ORTHO05D004320 2.3e-15 86.7 44 79.5
BolC4t22293H Brassica oleracea HOM05D003698 ORTHO05D004320 2.3e-15 86.7 44 79.5
BolC4t28682H Brassica oleracea HOM05D003698 ORTHO05D004320 2.3e-15 86.7 44 79.5
BraA03t11743Z Brassica rapa HOM05D003698 ORTHO05D004320 2.3e-15 86.7 44 79.5
BraA04t18865Z Brassica rapa HOM05D003698 ORTHO05D004320 2.3e-15 86.7 44 79.5
BraA05t19544Z Brassica rapa HOM05D003698 ORTHO05D004320 2.3e-15 86.7 44 79.5
Carub.0004s2849 Capsella rubella HOM05D003698 ORTHO05D004320 2.3e-15 86.7 44 79.5
CARHR141060 Cardamine hirsuta HOM05D003698 ORTHO05D004320 2.3e-15 86.7 44 79.5
Thhalv10001604m.g Eutrema salsugineum HOM05D003698 ORTHO05D004320 2.3e-15 86.7 44 79.5
Sp4g27860 Schrenkiella parvula HOM05D003698 ORTHO05D004320 2.3e-15 86.7 44 79.5
unitig_22.g6808 Utricularia gibba HOM05D003698 ORTHO05D004320 3.9e-15 85.9 43 83.7
Oeu014681.1 Olea europaea HOM05D003698 ORTHO05D004320 6.6e-15 85.1 44 79.5
Sc02g0002070 Simmondsia chinensis HOM05D003698 ORTHO05D004320 6.6e-15 85.1 44 79.5
AUR62013874 Chenopodium quinoa HOM05D003698 ORTHO05D004320 1.1e-14 84.3 50 72.0
THA.LOC104827595 Tarenaya hassleriana HOM05D003698 ORTHO05D004320 1.1e-14 84.3 44 77.3
EL10Ac7g16340 Beta vulgaris HOM05D003698 ORTHO05D004320 1.5e-14 84.0 44 75.0
Hund16943 Selenicereus undatus HOM05D003698 ORTHO05D004320 1.9e-14 83.6 44 75.0
AUR62036720 Chenopodium quinoa HOM05D003698 ORTHO05D004320 2.5e-14 83.2 44 77.3
THA.LOC104817282 Tarenaya hassleriana HOM05D003698 ORTHO05D004320 2.5e-14 83.2 44 79.5
Mapoly0004s0121 Marchantia polymorpha HOM05D003698 ORTHO05D004320 4.3e-14 82.4 45 75.6
CBR_g44345 Chara braunii HOM05D003698 ORTHO05D004320 2.1e-13 80.1 45 75.6
Pp3c23_11670 Physcomitrium patens HOM05D003698 ORTHO05D004320 3.6e-13 79.3 45 71.1
CBR_g41657 Chara braunii HOM05D003698 ORTHO05D004320 6.2e-13 78.6 45 73.3
CBR_g4022 Chara braunii HOM05D003698 ORTHO05D004320 1.8e-12 77.0 45 73.3
MCO01G022 Micromonas commoda HOM05D003698 ORTHO05D004320 5.2e-12 75.5 45 66.7
vmacro20957 Vaccinium macrocarpon HOM05D003698 ORTHO05D004320 3.4e-11 72.8 83 45.8
ClCG03G012620 Citrullus lanatus HOM05D003698 ORTHO05D004320 7.5e-11 71.6 33 87.9
SalBow5G5099 Salvia bowleyana HOM05D003698 ORTHO05D004320 1.3e-10 70.9 30 93.3
HPP92_000764 Vanilla planifolia HOM05D003698 ORTHO05D004320 1.3e-10 70.9 49 59.2
Cfa027079 Carpinus fangiana HOM05D003698 ORTHO05D004320 1.7e-10 70.5 52 57.7
CSS0047600 Camellia sinensis var. sinensis HOM05D003698 ORTHO05D004320 2.2e-10 70.1 52 57.7
TPR.G42 Trifolium pratense HOM05D003698 ORTHO05D004320 2.2e-10 70.1 30 93.3
Haze_15453 Corylus avellana HOM05D003698 ORTHO05D004320 2.9e-10 69.7 30 93.3
TWI59G0950 Tripterygium wilfordii HOM05D003698 ORTHO05D004320 3.2e-09 66.2 30 86.7
PRCOL_00001907 Prasinoderma coloniale HOM05D003698 ORTHO05D004320 7.0e-09 65.1 45 60.0
Solyc08g076550.3 Solanum lycopersicum HOM05D005023 ORTHO05D006009 1.2e-08 64.3 30 83.3
EL10Ac1g02076 Beta vulgaris HOM05D003698 ORTHO05D004320 1.7e-07 60.5 30 76.7
Haze_24893 Corylus avellana HOM05D003698 ORTHO05D004320 6.6e-07 58.5 25 92.0
AagrBONN_evm.TU.Sc2ySwM_117.907 Anthoceros agrestis HOM05D003698 ORTHO05D004320 7.3e-06 55.1 31 71.0


User provided reference genes

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