Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT11G2488 Cannabis sativa HOM05D007483 ORTHO05D009133 2.4e-77 292.0 137 100.0
Prupe.6G257100 Prunus persica HOM05D007483 ORTHO05D009133 2.0e-42 176.0 148 59.5
MD12G1143600 Malus domestica HOM05D007483 ORTHO05D009133 1.4e-40 169.9 148 56.1
GSVIVG01034153001 Vitis vinifera HOM05D007483 ORTHO05D009133 6.9e-40 167.5 142 61.3
QL07p048670 Quercus lobata HOM05D007483 ORTHO05D009133 9.1e-40 167.2 158 52.5
CiPaw.09G194400 Carya illinoinensis HOM05D007483 ORTHO05D009133 1.2e-39 166.8 157 57.3
Sopen10g034250 Solanum pennellii HOM05D007483 ORTHO05D009133 1.2e-39 166.8 122 64.8
RcHm_v2.0_Chr3g0466381 Rosa chinensis HOM05D007483 ORTHO05D009133 1.5e-39 166.4 125 62.4
FAN09G2152 Fragaria x ananassa HOM05D007483 ORTHO05D009133 2.6e-39 165.6 125 62.4
FAN14G1457 Fragaria x ananassa HOM05D007483 ORTHO05D009133 2.6e-39 165.6 125 63.2
THA.LOC104816252 Tarenaya hassleriana HOM05D007483 ORTHO05D009133 2.6e-39 165.6 141 58.2
CAN.G324.11 Capsicum annuum HOM05D007483 ORTHO05D009133 3.4e-39 165.2 127 63.0
ClCG04G008120 Citrullus lanatus HOM05D007483 ORTHO05D009133 3.4e-39 165.2 119 63.9
FAN02G3616 Fragaria x ananassa HOM05D007483 ORTHO05D009133 3.4e-39 165.2 125 62.4
Gohir.A12G221500 Gossypium hirsutum HOM05D007483 ORTHO05D009133 4.5e-39 164.9 134 59.7
FAN05G4215 Fragaria x ananassa HOM05D007483 ORTHO05D009133 1.7e-38 162.9 125 61.6
Sed0013393 Sechium edule HOM05D007483 ORTHO05D009133 3.8e-38 161.8 103 69.9
Gohir.D12G223900 Gossypium hirsutum HOM05D007483 ORTHO05D009133 6.5e-38 161.0 106 69.8
unitig_744.g24653 Utricularia gibba HOM05D000968 ORTHO05D003096 6.5e-38 161.0 134 57.5
MSTRG.19078 Avicennia marina HOM05D007483 ORTHO05D009133 2.5e-37 159.1 105 71.4
Lalb_Chr07g0193781 Lupinus albus HOM05D007483 ORTHO05D009133 2.5e-37 159.1 127 59.8
Manes.08G088800 Manihot esculenta HOM05D007483 ORTHO05D009133 2.5e-37 159.1 109 67.0
Duzib093G2195 Durio zibethinus HOM05D007483 ORTHO05D009133 3.2e-37 158.7 88 81.8
Nn2g13380 Nelumbo nucifera HOM05D007483 ORTHO05D009133 4.2e-37 158.3 109 63.3
Cfa016672 Carpinus fangiana HOM05D007483 ORTHO05D009133 7.2e-37 157.5 130 57.7
Thecc.05G037700 Theobroma cacao HOM05D007483 ORTHO05D009133 7.2e-37 157.5 110 68.2
Phvul.010G011100 Phaseolus vulgaris HOM05D007483 ORTHO05D009133 9.4e-37 157.1 109 66.1
VMungo0331G1516 Vigna mungo HOM05D007483 ORTHO05D009133 1.6e-36 156.4 124 58.9
Actinidia13151 Actinidia chinensis HOM05D007483 ORTHO05D009133 3.6e-36 155.2 124 59.7
C05p58700 Brassica napus HOM05D007483 ORTHO05D009133 3.6e-36 155.2 121 57.9
BolC5t34519H Brassica oleracea HOM05D007483 ORTHO05D009133 3.6e-36 155.2 121 57.9
AL3G20460 Arabidopsis lyrata HOM05D007483 ORTHO05D009133 4.7e-36 154.8 107 60.7
Ca_05061_v3 Cicer arietinum L. HOM05D007483 ORTHO05D009133 4.7e-36 154.8 101 69.3
Dinv35587 Davidia involucrata HOM05D007483 ORTHO05D009133 4.7e-36 154.8 147 50.3
Nitab4.5_0000216g0380 Nicotiana tabacum HOM05D007483 ORTHO05D009133 4.7e-36 154.8 90 78.9
AT3G09310 Arabidopsis thaliana HOM05D007483 ORTHO05D009133 6.1e-36 154.5 107 61.7
Migut.J00322 Erythranthe guttata HOM05D007483 ORTHO05D009133 7.9e-36 154.1 88 73.9
arahy.Tifrunner.gnm1.ann1.29J2UD Arachis hypogaea HOM05D007483 ORTHO05D009133 1.4e-35 153.3 108 65.7
arahy.Tifrunner.gnm1.ann1.A9IP9X Arachis hypogaea HOM05D007483 ORTHO05D009133 1.4e-35 153.3 112 65.2
Cc06_g02530 Coffea canephora HOM05D007483 ORTHO05D009133 1.4e-35 153.3 81 84.0
Medtr4g021820 Medicago truncatula HOM05D007483 ORTHO05D009133 1.4e-35 153.3 87 77.0
Sp3g07690 Schrenkiella parvula HOM05D007483 ORTHO05D009133 1.8e-35 152.9 127 55.9
Carub.0003s0842 Capsella rubella HOM05D007483 ORTHO05D009133 2.3e-35 152.5 135 56.3
Lj3g0014039 Lotus japonicus HOM05D007483 ORTHO05D009133 2.3e-35 152.5 132 55.3
TWI74G0092 Tripterygium wilfordii HOM05D007483 ORTHO05D009133 2.3e-35 152.5 134 59.0
Aqoxy1G00916 Aquilegia oxysepala HOM05D007483 ORTHO05D009133 3.0e-35 152.1 94 70.2
Cfa017361 Carpinus fangiana HOM05D007483 ORTHO05D009133 3.0e-35 152.1 133 56.4
Thhalv10021669m.g Eutrema salsugineum HOM05D007483 ORTHO05D009133 3.0e-35 152.1 101 65.3
SGA_v2.0_scaffold126G33776 Striga asiatica HOM05D007483 ORTHO05D009133 3.0e-35 152.1 104 65.4
EL10Ac6g14169 Beta vulgaris HOM05D007483 ORTHO05D009133 3.9e-35 151.8 100 68.0
A05p39660 Brassica napus HOM05D007483 ORTHO05D009133 3.9e-35 151.8 119 58.8
BraA05t22748Z Brassica rapa HOM05D007483 ORTHO05D009133 3.9e-35 151.8 132 56.1
BcaC05g29522 Brassica carinata HOM05D007483 ORTHO05D009133 5.1e-35 151.4 119 57.1
Aa31LG3G1800 Aethionema arabicum HOM05D007483 ORTHO05D009133 6.7e-35 151.0 91 70.3
BcaC05g29659 Brassica carinata HOM05D007483 ORTHO05D009133 6.7e-35 151.0 133 55.6
PSO063G2390 Papaver somniferum HOM05D007483 ORTHO05D009133 3.3e-34 148.7 123 59.3
Glyma.03G066000 Glycine max HOM05D007483 ORTHO05D009133 5.7e-34 147.9 95 68.4
ECA247G0729 Erigeron canadensis HOM05D001424 ORTHO05D009133 7.4e-34 147.5 94 68.1
Hund10634 Selenicereus undatus HOM05D007483 ORTHO05D009133 7.4e-34 147.5 94 72.3
CARHR083670 Cardamine hirsuta HOM05D007483 ORTHO05D009133 9.7e-34 147.1 90 68.9
HanXRQChr16g0497811 Helianthus annuus HOM05D007483 ORTHO05D009133 9.7e-34 147.1 126 55.6
Eucgr.A01276 Eucalyptus grandis HOM05D007483 ORTHO05D009133 2.2e-33 146.0 132 56.1
Lsat_1_v5_gn_9_30381 Lactuca sativa HOM05D007483 ORTHO05D009133 3.7e-33 145.2 83 74.7
Sabra16G0100900 Salix brachista HOM05D007483 ORTHO05D009133 1.1e-32 143.7 85 75.3
Os11g0706100 Oryza sativa ssp. japonica HOM05D007483 ORTHO05D009133 1.4e-32 143.3 126 54.0
Potri.016G099700 Populus trichocarpa HOM05D007483 ORTHO05D009133 1.4e-32 143.3 80 77.5
HPP92_019244 Vanilla planifolia HOM05D007483 ORTHO05D009133 1.8e-32 142.9 99 62.6
SEGI_13406 Sequoiadendron giganteum HOM05D007483 ORTHO05D009133 3.1e-32 142.1 85 69.4
TPR.G7337 Trifolium pratense HOM05D007483 ORTHO05D009133 3.1e-32 142.1 107 60.7
AUR62025813 Chenopodium quinoa HOM05D007483 ORTHO05D009133 5.3e-32 141.4 94 68.1
Ah.06g191870 Amaranthus hybridus HOM05D007483 ORTHO05D009133 1.5e-31 139.8 108 62.0
PSO339G1657 Papaver somniferum HOM05D007483 ORTHO05D009133 1.5e-31 139.8 96 65.6
Mapoly0019s0017 Marchantia polymorpha HOM05D007483 ORTHO05D009133 2.0e-31 139.4 96 59.4
Solyc10g084810.3 Solanum lycopersicum HOM05D007483 ORTHO05D009133 4.5e-31 138.3 73 80.8
Cpa.g.sc169.23 Carica papaya HOM05D007483 ORTHO05D009133 1.0e-30 137.1 114 54.4
Zm00001eb164460 Zea mays HOM05D007483 ORTHO05D009133 1.3e-30 136.7 84 66.7
Oeu007795.1 Olea europaea HOM05D007483 ORTHO05D009133 2.9e-30 135.6 71 81.7
DCAR_028750 Daucus carota HOM05D007483 ORTHO05D009133 6.5e-30 134.4 73 78.1
Pp3c15_21390 Physcomitrium patens HOM05D007483 ORTHO05D009133 4.2e-29 131.7 100 60.0
CBR_g19672 Chara braunii HOM05D007483 ORTHO05D009133 5.5e-29 131.3 83 67.5
CsaV3_4G025070 Cucumis sativus L. HOM05D007483 ORTHO05D009133 5.5e-29 131.3 132 50.8
AagrBONN_evm.TU.Sc2ySwM_228.2371 Anthoceros agrestis HOM05D007483 ORTHO05D009133 7.2e-29 131.0 86 65.1
PGSC0003DMG400011065 Solanum tuberosum HOM05D007483 ORTHO05D009133 1.2e-28 130.2 103 61.2
FvH4_6g13510 Fragaria vesca HOM05D007483 ORTHO05D009133 3.6e-28 128.6 68 76.5
Os02g0260400 Oryza sativa ssp. japonica HOM05D007483 ORTHO05D009133 6.7e-27 124.4 68 73.5
Nitab4.5_0000202g0060 Nicotiana tabacum HOM05D007483 ORTHO05D009133 1.3e-25 120.2 70 78.6
TAR636G3143 Trochodendron aralioides HOM05D007483 ORTHO05D009133 2.2e-25 119.4 69 75.4
MELO3C033192.2 Cucumis melo HOM05D007483 ORTHO05D009133 2.8e-25 119.0 70 72.9
Rhsim04G0158000 Rhododendron simsii HOM05D007483 ORTHO05D009133 1.4e-24 116.7 78 65.4
Ciclev10012381m.g Citrus clementina HOM05D007483 ORTHO05D009133 7.0e-24 114.4 165 41.2
Lj2A93G81 Lonicera japonica HOM05D007483 ORTHO05D009133 7.0e-24 114.4 78 67.9
MBI05_g28376_MAGBIO Magnolia biondii HOM05D007483 ORTHO05D009133 9.1e-24 114.0 68 73.5
Sabra13G0104100 Salix brachista HOM05D007483 ORTHO05D009133 1.2e-23 113.6 69 71.0
ATR0559G251 Amborella trichopoda HOM05D007483 ORTHO05D009133 4.5e-23 111.7 67 70.1
SMO165G0096 Selaginella moellendorffii HOM05D007483 ORTHO05D009133 1.5e-21 106.7 65 72.3
Cre17.g720183 Chlamydomonas reinhardtii HOM05D007483 ORTHO05D009133 1.9e-21 106.3 72 55.6
Peaxi162Scf00094g01112 Petunia axillaris HOM05D007483 ORTHO05D009133 1.2e-20 103.6 72 63.9
MCO07G608 Micromonas commoda HOM05D007483 ORTHO05D009133 1.1e-16 90.5 63 54.0
PRCOL_00002574 Prasinoderma coloniale HOM05D007483 ORTHO05D009133 1.1e-16 90.5 69 60.9
Psat2g094360 Pisum sativum HOM05D007483 ORTHO05D009133 7.0e-16 87.8 62 64.5


User provided reference genes

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