Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT11G2482 Cannabis sativa HOM05D006489 ORTHO05D007556 8.1e-283 976.5 515 100.0
QL08p010454 Quercus lobata HOM05D006489 ORTHO05D007556 3.8e-91 339.7 545 43.3
Haze_09673 Corylus avellana HOM05D006489 ORTHO05D007556 1.6e-81 307.8 569 39.0
CiPaw.12G129400 Carya illinoinensis HOM05D006489 ORTHO05D007556 6.8e-80 302.4 571 39.8
Cfa020351 Carpinus fangiana HOM05D006489 ORTHO05D007556 2.0e-76 290.8 569 39.0
Ciclev10008166m.g Citrus clementina HOM05D006489 ORTHO05D007556 7.8e-76 288.9 556 39.0
vmacro09717 Vaccinium macrocarpon HOM05D006489 ORTHO05D007556 1.9e-74 284.3 558 39.1
TWI15G0832 Tripterygium wilfordii HOM05D006489 ORTHO05D007556 7.3e-74 282.3 555 38.7
TAR627G0165 Trochodendron aralioides HOM05D006489 ORTHO05D007556 4.7e-73 279.6 552 38.2
Potri.011G139200 Populus trichocarpa HOM05D006489 ORTHO05D007556 1.0e-72 278.5 556 36.7
Duzib213G0414 Durio zibethinus HOM05D006489 ORTHO05D007556 3.1e-72 276.9 532 37.8
Sabra11G0125100 Salix brachista HOM05D006489 ORTHO05D007556 2.0e-71 274.2 563 37.5
Prupe.4G212300 Prunus persica HOM05D006489 ORTHO05D007556 6.0e-68 262.7 546 37.7
Actinidia35341 Actinidia chinensis HOM05D006489 ORTHO05D007556 1.2e-65 255.0 554 36.1
Gorai.004G027700 Gossypium raimondii HOM05D006489 ORTHO05D007556 2.1e-65 254.2 544 35.7
Gohir.D08G030200 Gossypium hirsutum HOM05D006489 ORTHO05D007556 6.2e-65 252.7 545 35.0
LjContig00272g0011286 Lotus japonicus HOM05D006489 ORTHO05D007556 6.2e-65 252.7 562 34.9
Dinv22265 Davidia involucrata HOM05D006489 ORTHO05D007556 1.4e-64 251.5 539 36.0
VMungo0647G1504 Vigna mungo HOM05D006489 ORTHO05D007556 3.4e-63 246.9 602 35.7
COL.COLO4_19762 Corchorus olitorius HOM05D006489 ORTHO05D007556 5.8e-63 246.1 473 35.7
arahy.Tifrunner.gnm1.ann1.I0Q6ZZ Arachis hypogaea HOM05D006489 ORTHO05D007556 7.5e-63 245.7 595 35.0
TPR.G1166 Trifolium pratense HOM05D006489 ORTHO05D007556 3.7e-62 243.4 563 35.0
Peaxi162Scf00964g00023 Petunia axillaris HOM05D006489 ORTHO05D007556 4.9e-62 243.0 546 36.4
RcHm_v2.0_Chr5g0039401 Rosa chinensis HOM05D006489 ORTHO05D007556 4.9e-62 243.0 404 40.1
Ca_06317_v3 Cicer arietinum L. HOM05D006489 ORTHO05D007556 6.4e-62 242.7 564 37.1
Cpa.g.sc97.9 Carica papaya HOM05D006489 ORTHO05D007556 1.1e-61 241.9 543 35.5
MD03G1201600 Malus domestica HOM05D006489 ORTHO05D007556 2.4e-61 240.7 558 35.8
MELO3C013233.2 Cucumis melo HOM05D006489 ORTHO05D007556 7.1e-61 239.2 559 34.7
Manes.03G129000 Manihot esculenta HOM05D006489 ORTHO05D007556 1.6e-60 238.0 557 35.9
CSS0036232 Camellia sinensis var. sinensis HOM05D006489 ORTHO05D007556 7.8e-60 235.7 575 34.4
Phvul.008G267300 Phaseolus vulgaris HOM05D006489 ORTHO05D007556 1.3e-59 235.0 607 34.1
CSS0017234 Camellia sinensis var. sinensis HOM05D006489 ORTHO05D007556 1.7e-59 234.6 576 34.9
Gohir.A08G019600 Gossypium hirsutum HOM05D006489 ORTHO05D007556 2.3e-59 234.2 536 35.3
Glyma.02G290600 Glycine max HOM05D006489 ORTHO05D007556 3.9e-59 233.4 603 33.5
Sed0018772 Sechium edule HOM05D006489 ORTHO05D007556 3.3e-58 230.3 563 35.7
Hma1.2p1_1162F.1_g262610 Hydrangea macrophylla HOM05D006489 ORTHO05D007556 4.3e-58 229.9 567 33.3
PGSC0003DMG400022321 Solanum tuberosum HOM05D006489 ORTHO05D007556 4.3e-58 229.9 543 34.8
Ca_25386_v3 Cicer arietinum L. HOM05D006489 ORTHO05D007556 9.5e-58 228.8 554 34.7
Sopen07g032750 Solanum pennellii HOM05D006489 ORTHO05D007556 6.2e-57 226.1 540 35.6
FAN21G0022 Fragaria x ananassa HOM05D006489 ORTHO05D007556 8.1e-57 225.7 405 39.0
Solyc07g064570.3 Solanum lycopersicum HOM05D006489 ORTHO05D007556 1.1e-56 225.3 542 35.4
Psat2g011040 Pisum sativum HOM05D006489 ORTHO05D007556 4.0e-56 223.4 557 35.2
arahy.Tifrunner.gnm1.ann1.X6VDEX Arachis hypogaea HOM05D006489 ORTHO05D007556 6.8e-56 222.6 608 33.6
FvH4_3g22630 Fragaria vesca HOM05D006489 ORTHO05D007556 2.6e-55 220.7 409 38.6
ClCG05G014300 Citrullus lanatus HOM05D006489 ORTHO05D007556 2.2e-54 217.6 543 34.8
Aqoxy1G03602 Aquilegia oxysepala HOM05D006489 ORTHO05D007556 6.4e-54 216.1 552 33.0
Oeu062694.1 Olea europaea HOM05D006489 ORTHO05D007556 1.9e-53 214.5 537 34.3
RhsimUnG0250900 Rhododendron simsii HOM05D006489 ORTHO05D007556 4.1e-53 213.4 685 29.9
Migut.M01768 Erythranthe guttata HOM05D006489 ORTHO05D007556 5.4e-53 213.0 526 35.4
GSVIVG01037644001 Vitis vinifera HOM05D006489 ORTHO05D007556 9.2e-53 212.2 530 33.2
MBI18_g45561_MAGBIO Magnolia biondii HOM05D006489 ORTHO05D007556 1.6e-52 211.5 563 32.9
Thecc.07G037900 Theobroma cacao HOM05D006489 ORTHO05D007556 7.8e-52 209.1 348 40.5
CAN.G337.129 Capsicum annuum HOM05D006489 ORTHO05D007556 1.0e-51 208.8 606 32.3
CARHR096250 Cardamine hirsuta HOM05D006489 ORTHO05D007556 3.0e-51 207.2 550 33.5
AL3G34270 Arabidopsis lyrata HOM05D006489 ORTHO05D007556 3.9e-51 206.8 546 32.4
Nitab4.5_0011175g0010 Nicotiana tabacum HOM05D006489 ORTHO05D007556 5.1e-51 206.5 502 34.9
AT3G20490 Arabidopsis thaliana HOM05D006489 ORTHO05D007556 1.1e-50 205.3 542 31.9
Atru.chr2.3342 Acer truncatum HOM05D006489 ORTHO05D007556 5.6e-50 203.0 377 37.7
Cc09_g09720 Coffea canephora HOM05D006489 ORTHO05D007556 7.3e-50 202.6 555 32.1
Medtr5g092580 Medicago truncatula HOM05D006489 ORTHO05D007556 7.3e-50 202.6 475 34.9
Lsat_1_v5_gn_9_94040 Lactuca sativa HOM05D006489 ORTHO05D007556 9.6e-50 202.2 547 33.1
FAN25G3282 Fragaria x ananassa HOM05D006489 ORTHO05D007556 1.6e-49 201.4 441 36.7
PGR083G1541 Punica granatum HOM05D006489 ORTHO05D007556 2.1e-49 201.1 534 33.1
Carub.0003s2045 Capsella rubella HOM05D006489 ORTHO05D007556 6.2e-49 199.5 534 32.6
MBI02_g07154_MAGBIO Magnolia biondii HOM05D006489 ORTHO05D007556 6.2e-49 199.5 553 33.3
Hma1.2p1_1162F.1_g262600 Hydrangea macrophylla HOM05D006489 ORTHO05D007556 8.1e-49 199.1 465 34.0
Aa31LG8G7280 Aethionema arabicum HOM05D006489 ORTHO05D007556 1.4e-48 198.4 549 32.6
Nitab4.5_0001913g0140 Nicotiana tabacum HOM05D006489 ORTHO05D007556 4.0e-48 196.8 501 35.3
Lalb_Chr10g0106941 Lupinus albus HOM05D006489 ORTHO05D007556 8.9e-48 195.7 401 39.4
Lalb_Chr17g0348451 Lupinus albus HOM05D006489 ORTHO05D007556 8.9e-48 195.7 414 37.7
THA.LOC104817868 Tarenaya hassleriana HOM05D006489 ORTHO05D007556 8.9e-48 195.7 536 33.0
HanXRQChr03g0076541 Helianthus annuus HOM05D006489 ORTHO05D007556 1.2e-47 195.3 535 33.3
ECA240G0124 Erigeron canadensis HOM05D006489 ORTHO05D007556 2.6e-47 194.1 550 33.1
TPR.G36685 Trifolium pratense HOM05D006489 ORTHO05D007556 2.2e-46 191.0 622 30.7
ATR0752G219 Amborella trichopoda HOM05D006489 ORTHO05D007556 3.8e-46 190.3 598 29.9
DCAR_022559 Daucus carota HOM05D006489 ORTHO05D007556 6.4e-46 189.5 549 33.5
Nn1g03547 Nelumbo nucifera HOM05D006489 ORTHO05D007556 5.4e-45 186.4 548 32.3
Hund23251 Selenicereus undatus HOM05D006489 ORTHO05D007556 1.2e-44 185.3 494 30.8
HanXRQChr08g0220561 Helianthus annuus HOM05D006489 ORTHO05D007556 3.0e-43 180.6 530 32.3
CDE02G1695 Ceratophyllum demersum HOM05D006489 ORTHO05D007556 6.6e-43 179.5 572 32.0
CsaV3_7G021220 Cucumis sativus L. HOM05D006489 ORTHO05D007556 6.6e-43 179.5 516 32.4
Glyma.14G024100 Glycine max HOM05D006489 ORTHO05D007556 9.6e-42 175.6 386 36.8
SGA_v2.0_scaffold80G25948 Striga asiatica HOM05D006489 ORTHO05D007556 2.8e-41 174.1 469 34.8
BraA04t16706Z Brassica rapa HOM05D006489 ORTHO05D007556 4.8e-41 173.3 548 30.1
Eucgr.F00766 Eucalyptus grandis HOM05D006489 ORTHO05D007556 1.8e-40 171.4 422 31.5
Sc03g0008610 Simmondsia chinensis HOM05D006489 ORTHO05D007556 1.2e-39 168.7 435 30.3
Medtr6g033325 Medicago truncatula HOM05D006489 ORTHO05D007556 2.6e-39 167.5 656 28.2
AUR62015766 Chenopodium quinoa HOM05D006489 ORTHO05D007556 5.8e-39 166.4 637 29.4
CDE05G3553 Ceratophyllum demersum HOM05D006489 ORTHO05D007556 2.2e-38 164.5 572 31.3
Sed0021471 Sechium edule HOM05D006489 ORTHO05D007556 4.9e-38 163.3 431 32.5
FAN16G1490 Fragaria x ananassa HOM05D006489 ORTHO05D007556 1.1e-37 162.2 268 40.3
Atru.BG.151.p Acer truncatum HOM05D006489 ORTHO05D007556 2.4e-37 161.0 425 31.5
EL10Ac4g07823 Beta vulgaris HOM05D006489 ORTHO05D007556 6.0e-36 156.4 612 28.1
BcaB06g27045 Brassica carinata HOM05D006489 ORTHO05D007556 1.0e-35 155.6 595 29.1
AUR62020449 Chenopodium quinoa HOM05D006489 ORTHO05D007556 4.3e-34 150.2 523 31.9
HPP92_013323 Vanilla planifolia HOM05D006489 ORTHO05D007556 1.3e-33 148.7 576 26.7
PSO541G0970 Papaver somniferum HOM05D006489 ORTHO05D007556 3.1e-32 144.1 549 29.1
Thhalv10028177m.g Eutrema salsugineum HOM05D006489 ORTHO05D007556 5.3e-32 143.3 543 31.5
PSO675G7358 Papaver somniferum HOM05D006489 ORTHO05D007556 9.0e-32 142.5 396 31.8
BcaC02g09533 Brassica carinata HOM05D006489 ORTHO05D007556 2.9e-30 137.5 653 27.0
A04p10340 Brassica napus HOM05D006489 ORTHO05D007556 2.9e-30 137.5 658 26.0
BolC4t25966H Brassica oleracea HOM05D006489 ORTHO05D007556 2.9e-30 137.5 653 27.0
C04p43850 Brassica napus HOM05D006489 ORTHO05D007556 1.9e-29 134.8 658 26.6
Psat1g097920 Pisum sativum HOM05D006489 ORTHO05D007556 1.9e-29 134.8 391 30.9
Lj1A872T56 Lonicera japonica HOM05D006489 ORTHO05D007556 6.0e-28 129.8 297 33.7
Os04g0625100 Oryza sativa ssp. japonica HOM05D006489 ORTHO05D007556 1.1e-26 125.6 509 27.9
unitig_62.g23281 Utricularia gibba HOM05D008272 ORTHO05D010429 7.4e-26 122.9 399 30.6
Zm00001eb431300 Zea mays HOM05D006489 ORTHO05D007556 1.8e-24 118.2 540 28.7
Sp7g05570 Schrenkiella parvula HOM05D006489 ORTHO05D007556 2.6e-23 114.4 306 30.1
HanXRQChr11g0337701 Helianthus annuus HOM05D006489 ORTHO05D007556 3.0e-19 100.9 523 27.0
ECA236G1547 Erigeron canadensis HOM05D006489 ORTHO05D007556 1.8e-16 91.7 273 28.9
SEGI_05401 Sequoiadendron giganteum HOM05D006489 ORTHO05D007556 4.1e-16 90.5 565 26.2
Lj8A169G92 Lonicera japonica HOM05D006489 ORTHO05D007556 1.2e-12 79.0 55 65.5
Psat0s2568g0040 Pisum sativum HOM05D006489 ORTHO05D007556 3.9e-11 73.9 61 59.0
Lsat_1_v5_gn_7_108561 Lactuca sativa HOM05D006489 ORTHO05D007556 2.2e-09 68.2 61 52.5
FvH4_5g03070 Fragaria vesca HOM05D012998 ORTHO05D007556 1.4e-08 65.5 110 41.8
FvH4_6g06532 Fragaria vesca HOM05D012998 ORTHO05D025560 1.4e-08 65.5 110 41.8
FAN07G1843 Fragaria x ananassa HOM05D012998 ORTHO05D025560 2.4e-08 64.7 110 41.8
FAN13G1116 Fragaria x ananassa HOM05D012998 ORTHO05D025560 5.3e-08 63.5 110 40.9
FAN02G3419 Fragaria x ananassa HOM05D012998 ORTHO05D025560 2.0e-07 61.6 114 40.4


User provided reference genes

Program Settings