Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT11G2445 Cannabis sativa HOM05D004824 ORTHO05D003903 3.7e-129 466.5 234 100.0
Prupe.4G124300 Prunus persica HOM05D004824 ORTHO05D003903 3.0e-38 164.5 228 43.4
MD05G1241200 Malus domestica HOM05D004824 ORTHO05D003903 4.8e-36 157.1 228 39.0
CANSAT21G1575 Cannabis sativa HOM05D004824 ORTHO05D003903 1.4e-35 155.6 209 43.5
MD10G1219600 Malus domestica HOM05D004824 ORTHO05D003903 1.4e-35 155.6 229 39.7
MELO3C010266.2 Cucumis melo HOM05D004824 ORTHO05D003903 4.1e-35 154.1 201 41.8
CsaV3_1G028470 Cucumis sativus L. HOM05D004824 ORTHO05D003903 5.3e-35 153.7 199 42.2
ClCG06G012000 Citrullus lanatus HOM05D004824 ORTHO05D003903 1.2e-34 152.5 201 41.8
Sed0004559 Sechium edule HOM05D004824 ORTHO05D003903 5.9e-34 150.2 183 43.2
QL05p080937 Quercus lobata HOM05D004824 ORTHO05D003903 3.2e-32 144.4 224 38.8
Dinv16084 Davidia involucrata HOM05D004824 ORTHO05D003903 5.5e-32 143.7 142 50.0
Sopen05g007720 Solanum pennellii HOM05D004824 ORTHO05D003903 9.4e-32 142.9 163 42.9
TWI79G0695 Tripterygium wilfordii HOM05D004824 ORTHO05D003903 2.7e-31 141.4 160 46.2
Hma1.2p1_0098F.1_g048160 Hydrangea macrophylla HOM05D004824 ORTHO05D003903 6.1e-31 140.2 144 49.3
Nitab4.5_0000391g0190 Nicotiana tabacum HOM05D004824 ORTHO05D003903 2.3e-30 138.3 163 41.7
CAN.G964.21 Capsicum annuum HOM05D004824 ORTHO05D003903 5.2e-30 137.1 164 42.1
SalBow7G1004 Salvia bowleyana HOM05D004824 ORTHO05D003903 1.2e-29 136.0 177 44.1
EL10Ac8g19216 Beta vulgaris HOM05D004824 ORTHO05D003903 2.6e-29 134.8 198 41.9
Solyc05g012920.3 Solanum lycopersicum HOM05D004824 ORTHO05D003903 2.6e-29 134.8 157 42.7
Actinidia04364 Actinidia chinensis HOM05D004824 ORTHO05D003903 3.4e-29 134.4 140 48.6
RcHm_v2.0_Chr5g0022931 Rosa chinensis HOM05D004824 ORTHO05D003903 3.4e-29 134.4 184 39.1
Hund12341 Selenicereus undatus HOM05D004824 ORTHO05D003903 5.7e-29 133.7 199 39.2
PGSC0003DMG400028391 Solanum tuberosum HOM05D004824 ORTHO05D003903 5.7e-29 133.7 157 42.7
Thecc.01G121800 Theobroma cacao HOM05D004824 ORTHO05D003903 1.3e-28 132.5 194 40.7
Sc12g0010940 Simmondsia chinensis HOM05D004824 ORTHO05D003903 2.8e-28 131.3 194 40.2
MSTRG.2666 Avicennia marina HOM05D004824 ORTHO05D003903 3.7e-28 131.0 171 40.9
Cpa.g.sc743.5 Carica papaya HOM05D004824 ORTHO05D003903 4.8e-28 130.6 200 38.0
Peaxi162Scf00222g00211 Petunia axillaris HOM05D004824 ORTHO05D003903 6.3e-28 130.2 147 45.6
Manes.10G060400 Manihot esculenta HOM05D004824 ORTHO05D003903 1.4e-27 129.0 182 43.4
TAR623G1477 Trochodendron aralioides HOM05D004824 ORTHO05D003903 1.4e-27 129.0 144 45.8
Migut.D01549 Erythranthe guttata HOM05D004824 ORTHO05D003903 1.8e-27 128.6 176 39.8
CiPaw.15G110500 Carya illinoinensis HOM05D004824 ORTHO05D003903 4.1e-27 127.5 192 40.6
Ciclev10011094m.g Citrus clementina HOM05D004824 ORTHO05D003903 5.4e-27 127.1 153 44.4
CSS0029730 Camellia sinensis var. sinensis HOM05D004824 ORTHO05D003903 7.0e-27 126.7 177 40.1
Rhsim04G0218400 Rhododendron simsii HOM05D004020 ORTHO05D004735 1.2e-26 125.9 157 42.0
FvH4_3g13690 Fragaria vesca HOM05D004824 ORTHO05D003903 1.6e-26 125.6 176 38.6
vmacro04677 Vaccinium macrocarpon HOM05D004824 ORTHO05D003903 1.6e-26 125.6 155 41.9
FAN11G3130 Fragaria x ananassa HOM05D004824 ORTHO05D003903 2.0e-26 125.2 176 38.6
FAN25G3679 Fragaria x ananassa HOM05D004824 ORTHO05D003903 2.0e-26 125.2 163 40.5
Gohir.A05G388900 Gossypium hirsutum HOM05D004824 ORTHO05D003903 4.5e-26 124.0 198 36.4
Manes.02G087700 Manihot esculenta HOM05D004824 ORTHO05D003903 1.0e-25 122.9 186 40.9
GSVIVG01015849001 Vitis vinifera HOM05D004824 ORTHO05D003903 1.3e-25 122.5 145 47.6
Gohir.D04G027600 Gossypium hirsutum HOM05D004824 ORTHO05D003903 1.7e-25 122.1 193 37.3
Gorai.N017300 Gossypium raimondii HOM05D004824 ORTHO05D003903 2.3e-25 121.7 193 37.3
Nn2g15691 Nelumbo nucifera HOM05D004824 ORTHO05D003903 2.3e-25 121.7 139 43.9
Duzib147G0012 Durio zibethinus HOM05D004824 ORTHO05D003903 3.8e-25 120.9 191 38.7
Gohir.D04G027800 Gossypium hirsutum HOM05D004824 ORTHO05D003903 3.8e-25 120.9 193 36.8
CSS0000296 Camellia sinensis var. sinensis HOM05D004824 ORTHO05D003903 5.0e-25 120.6 177 38.4
Gorai.012G030300 Gossypium raimondii HOM05D004824 ORTHO05D003903 5.0e-25 120.6 149 43.0
Lj1g0019375 Lotus japonicus HOM05D004824 ORTHO05D003903 5.0e-25 120.6 179 36.3
PGR142G1633 Punica granatum HOM05D004824 ORTHO05D003903 5.0e-25 120.6 155 40.6
Haze_18457 Corylus avellana HOM05D004824 ORTHO05D003903 6.6e-25 120.2 161 42.2
Lsat_1_v5_gn_8_33440 Lactuca sativa HOM05D004824 ORTHO05D003903 1.1e-24 119.4 189 36.5
AUR62033969 Chenopodium quinoa HOM05D004824 ORTHO05D003903 1.5e-24 119.0 154 42.2
Lj1g0000290 Lotus japonicus HOM05D004824 ORTHO05D003903 1.5e-24 119.0 212 33.0
ATR0807G095 Amborella trichopoda HOM05D004824 ORTHO05D003903 2.5e-24 118.2 176 38.6
TWI63G0852 Tripterygium wilfordii HOM05D004824 ORTHO05D003903 2.5e-24 118.2 156 37.8
vmacro09539 Vaccinium macrocarpon HOM05D004824 ORTHO05D003903 7.2e-24 116.7 151 41.1
Cc02_g09320 Coffea canephora HOM05D004824 ORTHO05D003903 9.5e-24 116.3 170 39.4
Aqoxy1G00124 Aquilegia oxysepala HOM05D004824 ORTHO05D003903 1.2e-23 115.9 163 37.4
Lalb_Chr10g0093361 Lupinus albus HOM05D004824 ORTHO05D003903 1.2e-23 115.9 195 35.4
AUR62008612 Chenopodium quinoa HOM05D004824 ORTHO05D003903 2.1e-23 115.2 150 37.3
MBI06_g07794_MAGBIO Magnolia biondii HOM05D004824 ORTHO05D003903 4.7e-23 114.0 151 41.7
Ca_06791_v3 Cicer arietinum L. HOM05D004824 ORTHO05D003903 8.0e-23 113.2 165 35.8
Lj1g0015996 Lotus japonicus HOM05D000005 ORTHO05D000012 8.0e-23 113.2 180 35.6
TPR.G25583 Trifolium pratense HOM05D004824 ORTHO05D003903 8.0e-23 113.2 181 34.8
arahy.Tifrunner.gnm1.ann1.SR7DDI Arachis hypogaea HOM05D004824 ORTHO05D003903 1.4e-22 112.5 172 37.2
Thhalv10001906m.g Eutrema salsugineum HOM05D004824 ORTHO05D003903 1.8e-22 112.1 185 36.8
AUR62033164 Chenopodium quinoa HOM05D004824 ORTHO05D003903 2.3e-22 111.7 155 36.8
BolC4t23963H Brassica oleracea HOM05D004824 ORTHO05D003903 8.9e-22 109.8 191 35.6
Sp4g08720 Schrenkiella parvula HOM05D004824 ORTHO05D003903 1.5e-21 109.0 185 36.2
Aa31LG5G8990 Aethionema arabicum HOM05D004824 ORTHO05D003903 2.0e-21 108.6 196 35.2
arahy.Tifrunner.gnm1.ann1.XC7PBP Arachis hypogaea HOM05D004824 ORTHO05D003903 2.0e-21 108.6 159 37.7
THA.LOC104816942 Tarenaya hassleriana HOM05D004824 ORTHO05D003903 2.0e-21 108.6 149 38.3
Carub.0004s0722 Capsella rubella HOM05D004824 ORTHO05D003903 2.6e-21 108.2 173 37.0
Rhsim04G0218500 Rhododendron simsii HOM05D004824 ORTHO05D003903 2.6e-21 108.2 165 37.6
Medtr3g091500 Medicago truncatula HOM05D004824 ORTHO05D003903 4.4e-21 107.5 169 37.9
HanXRQChr12g0366191 Helianthus annuus HOM05D004824 ORTHO05D003903 5.7e-21 107.1 170 37.6
BcaC02g10842 Brassica carinata HOM05D004824 ORTHO05D003903 9.8e-21 106.3 191 35.1
Medtr7g011500 Medicago truncatula HOM05D004824 ORTHO05D003903 2.2e-20 105.1 154 38.3
C04p24590 Brassica napus HOM05D004824 ORTHO05D003903 2.8e-20 104.8 191 34.6
TPR.G33412 Trifolium pratense HOM05D004824 ORTHO05D003903 3.7e-20 104.4 176 33.0
arahy.Tifrunner.gnm1.ann1.X6IIW5 Arachis hypogaea HOM05D004824 ORTHO05D003903 8.3e-20 103.2 159 37.7
Ciclev10014253m.g Citrus clementina HOM05D004824 ORTHO05D003903 1.8e-19 102.1 151 35.8
DCAR_030408 Daucus carota HOM05D004824 ORTHO05D003903 1.8e-19 102.1 191 31.9
TPR.G25560 Trifolium pratense HOM05D004824 ORTHO05D003903 5.4e-19 100.5 171 33.9
FAN16G0917 Fragaria x ananassa HOM05D001160 ORTHO05D001092 7.0e-19 100.1 123 42.3
Lsat_1_v5_gn_0_9380 Lactuca sativa HOM05D004824 ORTHO05D003903 7.0e-19 100.1 168 35.7
BraA07t29506Z Brassica rapa HOM05D004824 ORTHO05D003903 1.2e-18 99.4 199 32.2
AL4G19980 Arabidopsis lyrata HOM05D004824 ORTHO05D003903 1.6e-18 99.0 154 38.3
Nitab4.5_0008978g0030 Nicotiana tabacum HOM05D004824 ORTHO05D003903 2.0e-18 98.6 107 47.7
SHI24599 Sapria himalayana HOM05D008459 ORTHO05D003903 2.7e-18 98.2 161 33.5
A07p17870 Brassica napus HOM05D004824 ORTHO05D003903 1.3e-17 95.9 149 35.6
Ah.10g031450 Amaranthus hybridus HOM05D004824 ORTHO05D003903 1.7e-17 95.5 135 39.3
Potri.004G066600 Populus trichocarpa HOM05D004824 ORTHO05D003903 1.7e-17 95.5 204 33.8
TPR.G4149 Trifolium pratense HOM05D004824 ORTHO05D003903 2.9e-17 94.7 159 35.8
CDE04G1389 Ceratophyllum demersum HOM05D004824 ORTHO05D003903 5.0e-17 94.0 203 34.0
AT2G26790 Arabidopsis thaliana HOM05D004824 ORTHO05D003903 1.5e-16 92.4 148 37.2
Aa31LG5G1800 Aethionema arabicum HOM05D004824 ORTHO05D007466 5.6e-16 90.5 174 35.1
CARHR014190 Cardamine hirsuta HOM05D004824 ORTHO05D003903 5.6e-16 90.5 175 33.7
Lsat_1_v5_gn_1_54320 Lactuca sativa HOM05D004824 ORTHO05D003903 9.5e-16 89.7 178 33.1
Phvul.008G038900 Phaseolus vulgaris HOM05D004824 ORTHO05D003903 1.6e-15 89.0 148 33.1
Sabra04G0044400 Salix brachista HOM05D004824 ORTHO05D003903 8.0e-15 86.7 175 35.4
Glyma.05G060900 Glycine max HOM05D004824 ORTHO05D003903 2.3e-14 85.1 157 30.6
HanXRQChr13g0425241 Helianthus annuus HOM05D004824 ORTHO05D003903 2.3e-14 85.1 214 29.9
VMungo1383G0602 Vigna mungo HOM05D004824 ORTHO05D003903 4.0e-14 84.3 144 31.9
AT1G13800 Arabidopsis thaliana HOM05D004824 ORTHO05D003903 1.5e-13 82.4 177 31.1
HPP92_026390 Vanilla planifolia HOM05D004824 ORTHO05D003903 1.5e-13 82.4 184 27.7
VMungo0251G2839 Vigna mungo HOM05D004824 ORTHO05D003903 2.0e-13 82.0 143 30.8
AL1G25600 Arabidopsis lyrata HOM05D004824 ORTHO05D003903 7.5e-13 80.1 177 29.4
HanXRQChr17g0540701 Helianthus annuus HOM05D004824 ORTHO05D003903 2.2e-12 78.6 150 33.3
Zm00001eb413560 Zea mays HOM05D026208 ORTHO05D030341 5.4e-11 73.9 153 28.1
CAN.G1642.5 Capsicum annuum HOM05D004824 ORTHO05D003903 9.2e-11 73.2 67 52.2
TPR.G33705 Trifolium pratense HOM05D002450 ORTHO05D002953 2.0e-10 72.0 105 35.2
Glyma.07G217750 Glycine max HOM05D004824 ORTHO05D003903 2.7e-10 71.6 144 31.9
Oeu060442.1 Olea europaea HOM05D004824 ORTHO05D003903 3.5e-10 71.2 73 47.9
Carub.0001s1352 Capsella rubella HOM05D004824 ORTHO05D017526 1.0e-09 69.7 175 25.7
ECA233G4957 Erigeron canadensis HOM05D004824 ORTHO05D003903 1.3e-09 69.3 82 42.7
RcHm_v2.0_Chr3g0484571 Rosa chinensis HOM05D007893 ORTHO05D010042 2.3e-09 68.6 148 26.4
Gorai.004G065800 Gossypium raimondii HOM05D007893 ORTHO05D010042 3.9e-09 67.8 148 25.7
TWI81G0227 Tripterygium wilfordii HOM05D007893 ORTHO05D010042 3.9e-09 67.8 150 25.3
Sabra01G0108300 Salix brachista HOM05D007893 ORTHO05D010042 5.0e-09 67.4 198 24.7
ATR0680G090 Amborella trichopoda HOM05D007893 ORTHO05D010042 8.6e-09 66.6 140 25.7
Lsat_1_v5_gn_1_52140 Lactuca sativa HOM05D004824 ORTHO05D003903 1.1e-08 66.2 174 28.2
Psat3g199520 Pisum sativum HOM05D004824 ORTHO05D003903 3.3e-08 64.7 96 38.5
Atru.chr2.2027 Acer truncatum HOM05D007893 ORTHO05D010042 4.3e-08 64.3 139 24.5
Atru.chr2.2039 Acer truncatum HOM05D007893 ORTHO05D010042 4.3e-08 64.3 139 24.5
Ca_08153_v3 Cicer arietinum L. HOM05D007893 ORTHO05D010042 4.3e-08 64.3 148 24.3
Lsat_1_v5_gn_1_52160 Lactuca sativa HOM05D004824 ORTHO05D003903 4.3e-08 64.3 174 28.2
Sp1g12140 Schrenkiella parvula HOM05D004824 ORTHO05D017526 4.3e-08 64.3 149 28.9
Aa31LG5G12250 Aethionema arabicum HOM05D006931 ORTHO05D008782 7.3e-08 63.5 160 26.2
Cfa012483 Carpinus fangiana HOM05D007893 ORTHO05D010042 7.3e-08 63.5 131 25.2
Haze_08182 Corylus avellana HOM05D007893 ORTHO05D010042 7.3e-08 63.5 136 25.0
Thhalv10024897m.g Eutrema salsugineum HOM05D006931 ORTHO05D008782 1.2e-07 62.8 160 25.6
Potri.001G139300 Populus trichocarpa HOM05D007893 ORTHO05D010042 1.2e-07 62.8 198 23.7
Carub.0007s1417 Capsella rubella HOM05D006931 ORTHO05D008782 2.1e-07 62.0 154 26.0
BcaB02g06478 Brassica carinata HOM05D004824 ORTHO05D003903 3.6e-07 61.2 140 30.0
BraA06t24177Z Brassica rapa HOM05D004824 ORTHO05D003903 3.6e-07 61.2 168 27.4
SEGI_31001 Sequoiadendron giganteum HOM05D007358 ORTHO05D009117 3.6e-07 61.2 148 25.7
TPR.G8086 Trifolium pratense HOM05D007893 ORTHO05D010042 3.6e-07 61.2 164 25.0
CARHR234290 Cardamine hirsuta HOM05D006931 ORTHO05D008782 4.7e-07 60.8 154 27.3
Lalb_Chr08g0231971 Lupinus albus HOM05D007893 ORTHO05D010042 4.7e-07 60.8 148 23.6
TPR.G6545 Trifolium pratense HOM05D007893 ORTHO05D010042 4.7e-07 60.8 142 28.2
BcaC09g50628 Brassica carinata HOM05D006931 ORTHO05D008782 6.2e-07 60.5 154 25.3
BolC1t02203H Brassica oleracea HOM05D003050 ORTHO05D003513 6.2e-07 60.5 154 25.3
BraA01t01749Z Brassica rapa HOM05D003050 ORTHO05D003513 6.2e-07 60.5 154 24.7
Dinv26621 Davidia involucrata HOM05D006931 ORTHO05D008782 6.2e-07 60.5 160 26.2
Sp7g24650 Schrenkiella parvula HOM05D006931 ORTHO05D008782 6.2e-07 60.5 154 26.0
AL7G26160 Arabidopsis lyrata HOM05D006931 ORTHO05D008782 8.0e-07 60.1 152 26.3
C01p22740 Brassica napus HOM05D003050 ORTHO05D003513 8.0e-07 60.1 154 25.3
Medtr7g011520 Medicago truncatula HOM05D004824 ORTHO05D003903 8.0e-07 60.1 95 35.8
TAR629G3292 Trochodendron aralioides HOM05D006931 ORTHO05D008782 8.0e-07 60.1 152 27.6
A06p09890 Brassica napus HOM05D004824 ORTHO05D003903 1.1e-06 59.7 168 26.8
Sed0014013 Sechium edule HOM05D007893 ORTHO05D010042 1.1e-06 59.7 148 23.0
Cpa.g.sc159.24 Carica papaya HOM05D007893 ORTHO05D010042 1.4e-06 59.3 148 20.9
AT4G26680 Arabidopsis thaliana HOM05D006931 ORTHO05D008782 1.8e-06 58.9 154 24.7
BcaC09g52253 Brassica carinata HOM05D006931 ORTHO05D008782 1.8e-06 58.9 154 24.0
Aqoxy4G02238_Aqoxy4G02239 Aquilegia oxysepala HOM05D006931 ORTHO05D008782 2.3e-06 58.5 151 25.8
Psat2g137760 Pisum sativum HOM05D007893 ORTHO05D010042 2.3e-06 58.5 148 24.3
MD14G1081200 Malus domestica HOM05D007893 ORTHO05D010042 4.0e-06 57.8 131 25.2
BcaB08g37396 Brassica carinata HOM05D004824 ORTHO05D017526 5.2e-06 57.4 155 25.8
MSTRG.10694 Avicennia marina HOM05D006931 ORTHO05D008782 6.8e-06 57.0 150 25.3
Lj8P135T27 Lonicera japonica HOM05D006931 ORTHO05D008782 6.8e-06 57.0 159 24.5
PGSC0003DMG400002555 Solanum tuberosum HOM05D007893 ORTHO05D010042 6.8e-06 57.0 132 24.2
CANSAT64G0807 Cannabis sativa HOM05D006931 ORTHO05D008782 8.9e-06 56.6 160 23.8
Cc05_g02580 Coffea canephora HOM05D006931 ORTHO05D008782 8.9e-06 56.6 159 25.2
Manes.06G016000 Manihot esculenta HOM05D006931 ORTHO05D008782 8.9e-06 56.6 159 25.2
Nn3g20375 Nelumbo nucifera HOM05D006931 ORTHO05D008782 8.9e-06 56.6 151 28.5


User provided reference genes

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