Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT11G2438 Cannabis sativa HOM05D005541 ORTHO05D006875 1.6e-166 589.3 293 100.0
QL02p090804 Quercus lobata HOM05D005541 ORTHO05D006875 5.3e-122 441.4 290 73.1
Ciclev10009016m.g Citrus clementina HOM05D005541 ORTHO05D006875 7.7e-121 437.6 283 75.3
CiPaw.04G177400 Carya illinoinensis HOM05D005541 ORTHO05D006875 2.5e-119 432.6 281 73.7
Dinv36447 Davidia involucrata HOM05D005541 ORTHO05D006875 3.6e-118 428.7 289 72.7
Thecc.09G137600 Theobroma cacao HOM05D005541 ORTHO05D006875 1.8e-117 426.4 291 72.9
Atru.chr7.2014 Acer truncatum HOM05D005541 ORTHO05D006875 3.9e-117 425.2 285 73.3
Manes.14G119600 Manihot esculenta HOM05D005541 ORTHO05D006875 6.7e-117 424.5 289 70.6
GSVIVG01012859001 Vitis vinifera HOM05D005541 ORTHO05D006875 8.8e-117 424.1 286 73.1
MD15G1162200 Malus domestica HOM05D005541 ORTHO05D006875 2.0e-116 422.9 296 71.6
Gorai.004G109500 Gossypium raimondii HOM05D005541 ORTHO05D006875 5.7e-116 421.4 274 74.1
Cfa002261 Carpinus fangiana HOM05D005541 ORTHO05D006875 7.4e-116 421.0 290 70.0
Lsat_1_v5_gn_7_46800 Lactuca sativa HOM05D005541 ORTHO05D006875 9.7e-116 420.6 275 73.5
TWI32G1342 Tripterygium wilfordii HOM05D005541 ORTHO05D006875 9.7e-116 420.6 285 70.5
Cc06_g07640 Coffea canephora HOM05D005541 ORTHO05D006875 2.2e-115 419.5 278 71.9
TWI63G0008 Tripterygium wilfordii HOM05D005541 ORTHO05D006875 2.2e-115 419.5 290 70.0
TWI63G1467 Tripterygium wilfordii HOM05D005541 ORTHO05D006875 2.2e-115 419.5 290 70.0
RcHm_v2.0_Chr2g0087061 Rosa chinensis HOM05D005541 ORTHO05D006875 1.4e-114 416.8 290 69.3
TAR100G0002 Trochodendron aralioides HOM05D005541 ORTHO05D006875 2.4e-114 416.0 285 69.5
TAR170G0003 Trochodendron aralioides HOM05D005541 ORTHO05D006875 2.4e-114 416.0 285 69.5
FvH4_1g02000 Fragaria vesca HOM05D005541 ORTHO05D006875 4.1e-114 415.2 294 69.7
Prupe.7G257600 Prunus persica HOM05D005541 ORTHO05D006875 9.1e-114 414.1 301 68.1
Gohir.A08G090600 Gossypium hirsutum HOM05D005541 ORTHO05D006875 2.0e-113 412.9 274 73.0
ClCG06G011880 Citrullus lanatus HOM05D005541 ORTHO05D006875 3.5e-113 412.1 280 72.5
Cpa.g.sc46.69 Carica papaya HOM05D005541 ORTHO05D006875 5.9e-113 411.4 290 67.6
PGR142G4414 Punica granatum HOM05D005541 ORTHO05D006875 5.9e-113 411.4 288 69.8
Potri.006G061600 Populus trichocarpa HOM05D005541 ORTHO05D006875 7.7e-113 411.0 291 68.4
MELO3C010277.2 Cucumis melo HOM05D005541 ORTHO05D006875 1.3e-112 410.2 280 72.5
Duzib168G0734 Durio zibethinus HOM05D005541 ORTHO05D006875 1.3e-112 410.2 266 74.1
Nn8g39653 Nelumbo nucifera HOM05D005541 ORTHO05D006875 1.3e-112 410.2 290 68.6
FAN28G0031 Fragaria x ananassa HOM05D005541 ORTHO05D006875 1.7e-112 409.8 291 68.7
Glyma.15G198100 Glycine max HOM05D005541 ORTHO05D006875 1.7e-112 409.8 288 71.2
vmacro06115 Vaccinium macrocarpon HOM05D005541 ORTHO05D006875 2.2e-112 409.5 289 69.6
Actinidia26358 Actinidia chinensis HOM05D005541 ORTHO05D006875 5.0e-112 408.3 269 73.2
Actinidia14228 Actinidia chinensis HOM05D005541 ORTHO05D006875 8.5e-112 407.5 290 70.0
Medtr2g450740 Medicago truncatula HOM05D005541 ORTHO05D006875 1.5e-111 406.8 293 68.6
Sed0001591 Sechium edule HOM05D005541 ORTHO05D006875 1.5e-111 406.8 277 71.1
CsaV3_1G028340 Cucumis sativus L. HOM05D005541 ORTHO05D006875 2.5e-111 406.0 280 71.4
Lj6g0025347 Lotus japonicus HOM05D005541 ORTHO05D006875 4.2e-111 405.2 280 69.3
Sabra06G0044200 Salix brachista HOM05D005541 ORTHO05D006875 4.2e-111 405.2 291 68.0
Aqoxy7G03592 Aquilegia oxysepala HOM05D005541 ORTHO05D006875 5.5e-111 404.8 273 69.6
FAN26G0160 Fragaria x ananassa HOM05D005541 ORTHO05D006875 9.4e-111 404.1 293 66.9
Rhsim03G0253300 Rhododendron simsii HOM05D005541 ORTHO05D006875 9.4e-111 404.1 283 69.6
Glyma.09G091600 Glycine max HOM05D005541 ORTHO05D006875 1.6e-110 403.3 290 68.6
HanXRQChr03g0063361 Helianthus annuus HOM05D005541 ORTHO05D006875 2.1e-110 402.9 287 67.6
VMungo1309G2820 Vigna mungo HOM05D005541 ORTHO05D006875 6.1e-110 401.4 288 67.7
Gohir.D13G207800 Gossypium hirsutum HOM05D005541 ORTHO05D006875 8.0e-110 401.0 253 76.3
Gohir.A13G202000 Gossypium hirsutum HOM05D005541 ORTHO05D006875 1.0e-109 400.6 253 76.7
Potri.018G118200 Populus trichocarpa HOM05D005541 ORTHO05D006875 1.0e-109 400.6 293 68.6
Gorai.013G236700 Gossypium raimondii HOM05D005541 ORTHO05D006875 2.3e-109 399.4 253 75.9
Phvul.009G212200 Phaseolus vulgaris HOM05D005541 ORTHO05D006875 2.3e-109 399.4 298 66.4
Sed0021107 Sechium edule HOM05D005541 ORTHO05D006875 3.0e-109 399.1 279 69.5
Peaxi162Scf00088g00520 Petunia axillaris HOM05D005541 ORTHO05D006875 4.0e-109 398.7 288 67.4
MD02G1018200 Malus domestica HOM05D005541 ORTHO05D006875 6.7e-109 397.9 294 68.0
SGA_v2.0_scaffold45G17077 Striga asiatica HOM05D005541 ORTHO05D006875 6.7e-109 397.9 286 69.9
ECA240G1064 Erigeron canadensis HOM05D005541 ORTHO05D006875 8.8e-109 397.5 289 66.1
arahy.Tifrunner.gnm1.ann1.H1LUDS Arachis hypogaea HOM05D005541 ORTHO05D006875 1.2e-108 397.1 259 73.7
HanXRQChr09g0241861 Helianthus annuus HOM05D005541 ORTHO05D006875 2.0e-108 396.4 273 68.1
Lalb_Chr11g0073101 Lupinus albus HOM05D005541 ORTHO05D006875 2.0e-108 396.4 287 65.9
Migut.J01236 Erythranthe guttata HOM05D005541 ORTHO05D006875 2.6e-108 396.0 278 70.5
Psat1g021320 Pisum sativum HOM05D005541 ORTHO05D006875 2.6e-108 396.0 292 66.1
Sopen07g003450 Solanum pennellii HOM05D005541 ORTHO05D006875 4.4e-108 395.2 275 69.5
arahy.Tifrunner.gnm1.ann1.9T6TW9 Arachis hypogaea HOM05D005541 ORTHO05D006875 5.7e-108 394.8 286 67.5
Ca_03100_v3 Cicer arietinum L. HOM05D005541 ORTHO05D006875 1.3e-107 393.7 298 66.4
Solyc07g007380.4 Solanum lycopersicum HOM05D005541 ORTHO05D006875 1.3e-107 393.7 275 69.5
AUR62011221 Chenopodium quinoa HOM05D005541 ORTHO05D006875 1.4e-106 390.2 276 68.8
Oeu012222.1 Olea europaea HOM05D005541 ORTHO05D006875 1.4e-106 390.2 274 68.2
Sc08g0006020 Simmondsia chinensis HOM05D005541 ORTHO05D006875 3.1e-106 389.0 279 70.3
PGSC0003DMG400030689 Solanum tuberosum HOM05D005541 ORTHO05D006875 4.1e-106 388.7 275 69.1
MSTRG.6077 Avicennia marina HOM05D005541 ORTHO05D006875 9.1e-106 387.5 269 71.0
Nitab4.5_0002845g0020 Nicotiana tabacum HOM05D005541 ORTHO05D006875 1.6e-105 386.7 285 66.3
CAN.G1281.6 Capsicum annuum HOM05D005541 ORTHO05D006875 2.7e-105 386.0 286 65.7
AUR62020012 Chenopodium quinoa HOM05D005541 ORTHO05D006875 5.9e-105 384.8 258 70.9
Duzib187G1717 Durio zibethinus HOM05D005541 ORTHO05D006875 5.9e-105 384.8 243 76.1
Nitab4.5_0002286g0050 Nicotiana tabacum HOM05D005541 ORTHO05D006875 1.0e-104 384.0 285 65.6
Lalb_Chr08g0233581 Lupinus albus HOM05D005541 ORTHO05D006875 2.9e-104 382.5 284 65.8
Hund09308 Selenicereus undatus HOM05D005541 ORTHO05D006875 5.0e-104 381.7 285 67.0
DCAR_009345 Daucus carota HOM05D005541 ORTHO05D006875 1.2e-100 370.5 287 64.5
Gohir.D08G101500 Gossypium hirsutum HOM05D005541 ORTHO05D006875 1.5e-100 370.2 274 68.2
COL.COLO4_33365 Corchorus olitorius HOM05D005541 ORTHO05D006875 6.3e-99 364.8 238 74.4
Dinv41444 Davidia involucrata HOM05D005541 ORTHO05D006875 8.3e-99 364.4 224 77.2
Lj7A439T20 Lonicera japonica HOM05D005541 ORTHO05D006875 4.1e-98 362.1 239 73.2
PSO478G5201 Papaver somniferum HOM05D005541 ORTHO05D006875 1.7e-96 356.7 259 65.3
Haze_25444 Corylus avellana HOM05D005541 ORTHO05D006875 1.1e-95 354.0 276 64.5
PSO017G3833 Papaver somniferum HOM05D005541 ORTHO05D006875 2.8e-94 349.4 259 64.5
THA.LOC104808948 Tarenaya hassleriana HOM05D005541 ORTHO05D006875 2.3e-93 346.3 269 60.6
Eucgr.C00480 Eucalyptus grandis HOM05D005541 ORTHO05D006875 3.0e-93 345.9 293 62.1
Gohir.D13G208000 Gossypium hirsutum HOM05D005541 ORTHO05D006875 2.0e-92 343.2 207 78.7
ATR0767G116 Amborella trichopoda HOM05D005541 ORTHO05D006875 3.4e-92 342.4 269 60.2
THA.LOC104815290 Tarenaya hassleriana HOM05D005541 ORTHO05D006875 9.8e-92 340.9 271 60.1
HPP92_020539 Vanilla planifolia HOM05D005541 ORTHO05D006875 2.2e-91 339.7 287 55.4
Ah.09g224130 Amaranthus hybridus HOM05D005541 ORTHO05D006875 1.2e-89 334.0 231 69.3
CSS0024399 Camellia sinensis var. sinensis HOM05D005541 ORTHO05D006875 1.2e-89 334.0 228 71.9
EL10Ac8g18781 Beta vulgaris HOM05D005541 ORTHO05D006875 2.7e-89 332.8 230 68.3
MBI15_g25760_MAGBIO Magnolia biondii HOM05D005541 ORTHO05D006875 1.0e-88 330.9 371 47.2
CDE02G2611 Ceratophyllum demersum HOM05D005541 ORTHO05D006875 5.2e-85 318.5 282 55.3
AT5G35080 Arabidopsis thaliana HOM05D005541 ORTHO05D006875 4.9e-83 312.0 265 58.1
BcaB02g10581 Brassica carinata HOM05D005541 ORTHO05D006875 5.4e-82 308.5 280 54.6
BcaC02g11442 Brassica carinata HOM05D005541 ORTHO05D006875 1.6e-81 307.0 266 56.4
C04p15500 Brassica napus HOM05D005541 ORTHO05D006875 1.6e-81 307.0 266 56.4
BolC4t23121H Brassica oleracea HOM05D005541 ORTHO05D006875 1.6e-81 307.0 266 56.4
BcaB01g03929 Brassica carinata HOM05D005541 ORTHO05D006875 6.0e-81 305.1 263 57.4
BolC3t14579H Brassica oleracea HOM05D005541 ORTHO05D006875 6.0e-81 305.1 280 55.0
BraA05t20138Z Brassica rapa HOM05D005541 ORTHO05D006875 7.8e-81 304.7 276 54.7
FAN19G0623 Fragaria x ananassa HOM05D005541 ORTHO05D006875 7.8e-81 304.7 209 71.3
Carub.0007s3085 Capsella rubella HOM05D005541 ORTHO05D006875 1.0e-80 304.3 272 55.1
Sp4g15930 Schrenkiella parvula HOM05D005541 ORTHO05D006875 1.3e-80 303.9 276 55.8
Actinidia38706 Actinidia chinensis HOM05D005541 ORTHO05D006875 1.7e-80 303.5 218 66.5
Aa31LG10G11810 Aethionema arabicum HOM05D005541 ORTHO05D006875 3.0e-80 302.8 236 61.4
A05p11950 Brassica napus HOM05D005541 ORTHO05D006875 3.9e-80 302.4 276 54.3
Thhalv10002066m.g Eutrema salsugineum HOM05D005541 ORTHO05D006875 1.5e-79 300.4 270 54.8
C03p21960 Brassica napus HOM05D005541 ORTHO05D006875 3.3e-79 299.3 264 55.7
Zm00001eb028460 Zea mays HOM05D005541 ORTHO05D006875 3.3e-79 299.3 266 52.6
CARHR217140 Cardamine hirsuta HOM05D005541 ORTHO05D006875 1.7e-72 276.9 218 61.0
Oeu028018.1 Olea europaea HOM05D005541 ORTHO05D006875 2.3e-72 276.6 242 59.5
BcaC01g05834 Brassica carinata HOM05D005541 ORTHO05D006875 2.1e-70 270.0 222 59.9
Pp3c2_6810 Physcomitrium patens HOM05D005541 ORTHO05D006875 4.0e-69 265.8 250 51.6
Zm00001eb136970 Zea mays HOM05D005541 ORTHO05D006875 3.0e-64 249.6 224 52.7
Pp3c1_27810 Physcomitrium patens HOM05D005541 ORTHO05D006875 9.5e-63 244.6 263 47.9
Mapoly0020s0022 Marchantia polymorpha HOM05D005541 ORTHO05D006875 3.8e-59 232.6 277 46.6
unitig_0.g507 Utricularia gibba HOM05D005541 ORTHO05D006875 1.2e-57 227.6 172 62.8
AagrBONN_evm.TU.Sc2ySwM_228.2742 Anthoceros agrestis HOM05D005541 ORTHO05D006875 1.7e-56 223.8 246 46.7
SMO174G0227 Selaginella moellendorffii HOM05D005541 ORTHO05D006875 6.9e-53 211.8 259 42.5
Oeu028135.2 Olea europaea HOM05D005541 ORTHO05D006875 4.9e-51 205.7 178 63.5
SEGI_36543 Sequoiadendron giganteum HOM05D005541 ORTHO05D006875 1.0e-40 171.4 146 56.8
CBR_g45403 Chara braunii HOM05D005541 ORTHO05D006875 4.0e-37 159.5 267 34.8
Ca_27153_v3 Cicer arietinum L. HOM05D005541 ORTHO05D006875 4.6e-33 146.0 97 76.3
Os06g0644800 Oryza sativa ssp. japonica HOM05D005541 ORTHO05D006875 1.0e-32 144.8 129 51.9
MCO11G854 Micromonas commoda HOM05D005541 ORTHO05D006875 2.6e-28 130.2 218 33.9
PRCOL_00001292 Prasinoderma coloniale HOM05D005541 ORTHO05D006875 9.0e-21 105.1 142 38.7
Cre06.g257900 Chlamydomonas reinhardtii HOM05D005541 ORTHO05D006875 4.5e-20 102.8 158 37.3
RcHm_v2.0_Chr1g0314561 Rosa chinensis HOM05D005541 ORTHO05D006875 2.9e-19 100.1 76 64.5
Ca_24194_v3 Cicer arietinum L. HOM05D000002 ORTHO05D000001 1.4e-18 97.8 111 49.5
HanXRQChr03g0068961 Helianthus annuus HOM05D005541 ORTHO05D006875 1.0e-16 91.7 48 89.6
unitig_0.g506 Utricularia gibba HOM05D001054 ORTHO05D007110 2.8e-14 83.6 73 56.2
RcHm_v2.0_Chr5g0069501 Rosa chinensis HOM05D005541 ORTHO05D006875 8.2e-14 82.0 60 65.0
RcHm_v2.0_Chr7g0241391 Rosa chinensis HOM05D005541 ORTHO05D006875 1.9e-10 70.9 43 67.4
FvH4_1g02060 Fragaria vesca HOM05D005541 ORTHO05D006875 6.7e-08 62.4 40 65.0


User provided reference genes

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