Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT11G2434 Cannabis sativa HOM05D004029 ORTHO05D004613 0.0e+00 2495.3 1244 100.0
Prupe.4G187500 Prunus persica HOM05D004029 ORTHO05D004613 0.0e+00 2073.9 1260 81.8
MD11G1239600 Malus domestica HOM05D004029 ORTHO05D004613 0.0e+00 2071.2 1260 81.3
CiPaw.11G174500 Carya illinoinensis HOM05D004029 ORTHO05D004613 0.0e+00 2063.5 1260 81.5
CSS0001233 Camellia sinensis var. sinensis HOM05D004029 ORTHO05D004613 0.0e+00 2063.1 1258 80.6
COL.COLO4_03559 Corchorus olitorius HOM05D004029 ORTHO05D004613 0.0e+00 2063.1 1258 80.9
CSS0038840 Camellia sinensis var. sinensis HOM05D004029 ORTHO05D004613 0.0e+00 2062.0 1258 80.5
Thecc.07G074600 Theobroma cacao HOM05D004029 ORTHO05D004613 0.0e+00 2056.2 1259 80.2
Cfa020529 Carpinus fangiana HOM05D004029 ORTHO05D004613 0.0e+00 2054.6 1263 80.8
MD03G1222200 Malus domestica HOM05D004029 ORTHO05D004613 0.0e+00 2052.7 1260 81.3
GSVIVG01014409001 Vitis vinifera HOM05D004029 ORTHO05D004613 0.0e+00 2050.8 1260 80.7
FAN21G1497 Fragaria x ananassa HOM05D004029 ORTHO05D004613 0.0e+00 2041.9 1258 80.6
RcHm_v2.0_Chr5g0034971 Rosa chinensis HOM05D004029 ORTHO05D004613 0.0e+00 2040.4 1274 80.0
TWI38G0763 Tripterygium wilfordii HOM05D004029 ORTHO05D004613 0.0e+00 2039.6 1252 80.4
Actinidia05171 Actinidia chinensis HOM05D004029 ORTHO05D004613 0.0e+00 2037.3 1259 79.2
FAN16G1973 Fragaria x ananassa HOM05D004029 ORTHO05D004613 0.0e+00 2034.6 1258 80.4
FvH4_3g20750 Fragaria vesca HOM05D004029 ORTHO05D004613 0.0e+00 2033.1 1258 80.4
Duzib268G1628 Durio zibethinus HOM05D004029 ORTHO05D004613 0.0e+00 2030.4 1267 79.2
FAN25G1694 Fragaria x ananassa HOM05D004029 ORTHO05D004613 0.0e+00 2029.6 1258 80.2
FAN11G1114 Fragaria x ananassa HOM05D004029 ORTHO05D004613 0.0e+00 2029.2 1258 80.2
Potri.011G123900 Populus trichocarpa HOM05D004029 ORTHO05D004613 0.0e+00 2027.3 1258 78.7
Eucgr.F03341 Eucalyptus grandis HOM05D004029 ORTHO05D004613 0.0e+00 2026.1 1261 79.5
Duzib213G0443 Durio zibethinus HOM05D004029 ORTHO05D004613 0.0e+00 2021.1 1260 79.0
Manes.03G114700 Manihot esculenta HOM05D004029 ORTHO05D004613 0.0e+00 2018.8 1261 79.6
PGR031G0420 Punica granatum HOM05D004029 ORTHO05D004613 0.0e+00 2013.8 1248 79.5
Gohir.D01G054200 Gossypium hirsutum HOM05D004029 ORTHO05D004613 0.0e+00 2010.3 1258 78.4
Nn1g03970 Nelumbo nucifera HOM05D004029 ORTHO05D004613 0.0e+00 2010.3 1260 78.7
Gorai.002G074000 Gossypium raimondii HOM05D004029 ORTHO05D004613 0.0e+00 2007.6 1259 78.4
CsaV3_3G044490 Cucumis sativus L. HOM05D004029 ORTHO05D004613 0.0e+00 2002.6 1257 79.0
Rhsim06G0193700 Rhododendron simsii HOM05D004029 ORTHO05D004613 0.0e+00 2002.3 1254 78.9
Sabra11G0109200 Salix brachista HOM05D004029 ORTHO05D004613 0.0e+00 1987.2 1300 75.2
Lj3g0020332 Lotus japonicus HOM05D004029 ORTHO05D004613 0.0e+00 1977.2 1256 78.7
Glyma.13G280700 Glycine max HOM05D004029 ORTHO05D004613 0.0e+00 1970.7 1258 78.5
vmacro11822 Vaccinium macrocarpon HOM05D004029 ORTHO05D004613 0.0e+00 1966.8 1282 76.3
Phvul.005G085200 Phaseolus vulgaris HOM05D004029 ORTHO05D004613 0.0e+00 1961.0 1257 78.1
Ca_01815_v3 Cicer arietinum L. HOM05D004029 ORTHO05D004613 0.0e+00 1958.7 1257 77.7
Lalb_Chr25g0286611 Lupinus albus HOM05D004029 ORTHO05D004613 0.0e+00 1958.0 1247 77.8
Haze_09504 Corylus avellana HOM05D004029 ORTHO05D004613 0.0e+00 1956.4 1250 78.8
QL08p019114 Quercus lobata HOM05D004029 ORTHO05D004613 0.0e+00 1952.6 1518 67.7
THA.LOC104811852 Tarenaya hassleriana HOM05D004029 ORTHO05D004613 0.0e+00 1952.6 1259 76.9
Aqoxy7G04099 Aquilegia oxysepala HOM05D004029 ORTHO05D004613 0.0e+00 1940.6 1255 76.6
Medtr2g080050 Medicago truncatula HOM05D004029 ORTHO05D004613 0.0e+00 1939.1 1257 76.8
ClCG11G018320 Citrullus lanatus HOM05D004029 ORTHO05D004613 0.0e+00 1934.8 1327 73.9
Psat5g246120 Pisum sativum HOM05D004029 ORTHO05D004613 0.0e+00 1932.9 1273 75.6
Sc03g0009690 Simmondsia chinensis HOM05D004029 ORTHO05D004613 0.0e+00 1929.1 1287 73.7
Carub.0008s1474 Capsella rubella HOM05D004029 ORTHO05D004613 0.0e+00 1928.7 1260 77.1
AUR62015624 Chenopodium quinoa HOM05D004029 ORTHO05D004613 0.0e+00 1926.4 1256 75.0
arahy.Tifrunner.gnm1.ann1.3J4V9H Arachis hypogaea HOM05D004029 ORTHO05D004613 0.0e+00 1925.2 1257 76.0
AT5G54440 Arabidopsis thaliana HOM05D004029 ORTHO05D004613 0.0e+00 1922.5 1259 76.5
Thhalv10012467m.g Eutrema salsugineum HOM05D004029 ORTHO05D004613 0.0e+00 1922.5 1262 76.1
CARHR267710 Cardamine hirsuta HOM05D004029 ORTHO05D004613 0.0e+00 1921.4 1259 76.1
Ah.06g183680 Amaranthus hybridus HOM05D004029 ORTHO05D004613 0.0e+00 1920.6 1256 74.8
AUR62029337 Chenopodium quinoa HOM05D004029 ORTHO05D004613 0.0e+00 1919.8 1257 75.1
Sp6g16420 Schrenkiella parvula HOM05D004029 ORTHO05D004613 0.0e+00 1918.3 1259 75.9
PSO675G2841 Papaver somniferum HOM05D004029 ORTHO05D004613 0.0e+00 1915.6 1263 75.0
PSO541G4143 Papaver somniferum HOM05D004029 ORTHO05D004613 0.0e+00 1914.0 1263 74.9
BcaC03g14313 Brassica carinata HOM05D004029 ORTHO05D004613 0.0e+00 1912.9 1261 75.7
MSTRG.12924 Avicennia marina HOM05D004029 ORTHO05D004613 0.0e+00 1912.5 1255 75.5
A02p10290 Brassica napus HOM05D004029 ORTHO05D004613 0.0e+00 1911.7 1260 75.2
BolC2t07800H Brassica oleracea HOM05D004029 ORTHO05D004613 0.0e+00 1910.2 1262 75.7
C02p17030 Brassica napus HOM05D004029 ORTHO05D004613 0.0e+00 1909.8 1262 75.7
Aa31LG3G10350 Aethionema arabicum HOM05D004029 ORTHO05D004613 0.0e+00 1908.6 1260 75.3
BraA02t06097Z Brassica rapa HOM05D004029 ORTHO05D004613 0.0e+00 1906.0 1266 75.0
HanXRQChr10g0289491 Helianthus annuus HOM05D004029 ORTHO05D004613 0.0e+00 1904.8 1249 74.8
BcaB05g22133 Brassica carinata HOM05D004029 ORTHO05D004613 0.0e+00 1904.4 1260 75.2
Hund02202 Selenicereus undatus HOM05D004029 ORTHO05D004613 0.0e+00 1902.9 1241 75.4
arahy.Tifrunner.gnm1.ann1.IWX37I Arachis hypogaea HOM05D004029 ORTHO05D004613 0.0e+00 1902.5 1283 74.4
DCAR_013079 Daucus carota HOM05D004029 ORTHO05D004613 0.0e+00 1902.1 1265 74.1
Ca_30535_v3 Cicer arietinum L. HOM05D004029 ORTHO05D004613 0.0e+00 1901.7 1257 76.1
Migut.H01912 Erythranthe guttata HOM05D004029 ORTHO05D004613 0.0e+00 1900.6 1255 75.4
Ciclev10007273m.g Citrus clementina HOM05D004029 ORTHO05D004613 0.0e+00 1899.0 1250 75.2
Peaxi162Scf01111g00112 Petunia axillaris HOM05D004029 ORTHO05D004613 0.0e+00 1895.2 1255 74.7
Lalb_Chr01g0016971 Lupinus albus HOM05D004029 ORTHO05D004613 0.0e+00 1892.5 1248 75.6
EL10Ac4g08092 Beta vulgaris HOM05D004029 ORTHO05D004613 0.0e+00 1891.7 1257 73.7
ATR0064G128 Amborella trichopoda HOM05D004029 ORTHO05D004613 0.0e+00 1889.4 1269 73.0
BcaC04g20340 Brassica carinata HOM05D004029 ORTHO05D004613 0.0e+00 1877.8 1260 74.4
BolC9t57346H Brassica oleracea HOM05D004029 ORTHO05D004613 0.0e+00 1873.2 1261 74.3
A10p11660 Brassica napus HOM05D004029 ORTHO05D004613 0.0e+00 1870.1 1261 74.3
Sopen07g031610 Solanum pennellii HOM05D004029 ORTHO05D004613 0.0e+00 1869.4 1253 73.4
BcaB08g35795 Brassica carinata HOM05D004029 ORTHO05D004613 0.0e+00 1865.9 1259 73.8
Solyc07g063440.3 Solanum lycopersicum HOM05D004029 ORTHO05D004613 0.0e+00 1864.0 1253 73.3
C09p44730 Brassica napus HOM05D004029 ORTHO05D004613 0.0e+00 1861.7 1261 74.0
BraA10t43261Z Brassica rapa HOM05D004029 ORTHO05D004613 0.0e+00 1859.7 1264 74.1
CAN.G162.91 Capsicum annuum HOM05D004029 ORTHO05D004613 0.0e+00 1859.7 1253 73.3
ECA240G1154 Erigeron canadensis HOM05D004029 ORTHO05D004613 0.0e+00 1857.0 1233 74.5
Lj1C850G7 Lonicera japonica HOM05D004029 ORTHO05D004613 0.0e+00 1847.4 1270 73.7
Sed0019496 Sechium edule HOM05D004029 ORTHO05D004613 0.0e+00 1830.5 1160 77.9
Lsat_1_v5_gn_9_95861 Lactuca sativa HOM05D004029 ORTHO05D004613 0.0e+00 1815.4 1237 73.1
SGA_v2.0_scaffold77G25216 Striga asiatica HOM05D004029 ORTHO05D004613 0.0e+00 1810.8 1314 70.0
VMungo1080G0798 Vigna mungo HOM05D004029 ORTHO05D004613 0.0e+00 1794.6 1159 77.2
Os12g0554400 Oryza sativa ssp. japonica HOM05D004029 ORTHO05D004613 0.0e+00 1776.5 1257 69.5
Lsat_1_v5_gn_7_105721 Lactuca sativa HOM05D004029 ORTHO05D004613 0.0e+00 1765.7 1247 70.2
Gorai.007G319300 Gossypium raimondii HOM05D004029 ORTHO05D004613 0.0e+00 1661.4 1078 75.4
ECA236G3046 Erigeron canadensis HOM05D004029 ORTHO05D004613 0.0e+00 1645.2 1219 66.5
Oeu008022.1 Olea europaea HOM05D004029 ORTHO05D004613 0.0e+00 1637.1 1091 74.3
Atru.chr2.2811 Acer truncatum HOM05D004029 ORTHO05D004613 0.0e+00 1633.2 1033 78.9
HanXRQChr13g0386411 Helianthus annuus HOM05D004029 ORTHO05D004613 0.0e+00 1619.4 1251 64.7
Glyma.12G220900 Glycine max HOM05D004029 ORTHO05D004613 0.0e+00 1610.1 1006 79.7
Nitab4.5_0001204g0130 Nicotiana tabacum HOM05D004029 ORTHO05D004613 0.0e+00 1580.8 1041 75.2
Gohir.A11G282734 Gossypium hirsutum HOM05D004029 ORTHO05D004613 0.0e+00 1538.1 1062 72.9
AL8G29790 Arabidopsis lyrata HOM05D004029 ORTHO05D004613 0.0e+00 1516.5 1031 74.3
Nitab4.5_0000815g0060 Nicotiana tabacum HOM05D004029 ORTHO05D004613 0.0e+00 1469.1 1087 69.0
TAR627G0860 Trochodendron aralioides HOM05D004029 ORTHO05D004613 0.0e+00 1455.3 924 77.7
Gohir.D11G296200 Gossypium hirsutum HOM05D004029 ORTHO05D004613 0.0e+00 1441.8 1015 72.2
Gohir.A01G067000 Gossypium hirsutum HOM05D004029 ORTHO05D004613 0.0e+00 1403.7 856 80.0
Mapoly0031s0138 Marchantia polymorpha HOM05D004029 ORTHO05D004613 0.0e+00 1275.8 1393 49.5
unitig_0.g2259 Utricularia gibba HOM05D004029 ORTHO05D004613 0.0e+00 1223.4 1252 54.2
Pp3c26_12060 Physcomitrium patens HOM05D004029 ORTHO05D004613 0.0e+00 1175.6 1356 47.5
MELO3C018224.2 Cucumis melo HOM05D004029 ORTHO05D004613 0.0e+00 1171.0 763 76.7
Zm00001eb137170 Zea mays HOM05D004029 ORTHO05D004613 0.0e+00 1122.8 743 73.6
CDE05G1182 Ceratophyllum demersum HOM05D004029 ORTHO05D004613 0.0e+00 1111.7 861 65.0
Cpa.g.sc80.100 Carica papaya HOM05D004029 ORTHO05D004613 1.1e-306 1057.0 1003 57.2
AagrBONN_evm.TU.Sc2ySwM_344.2130 Anthoceros agrestis HOM05D004029 ORTHO05D004613 9.4e-285 984.2 1151 46.7
Dinv08327 Davidia involucrata HOM05D004029 ORTHO05D004613 1.5e-261 907.1 592 76.2
Psat4g074000 Pisum sativum HOM05D004029 ORTHO05D004613 1.5e-253 880.6 879 54.6
Gohir.1Z049674 Gossypium hirsutum HOM05D004029 ORTHO05D004613 1.6e-247 860.5 536 78.0
CBR_g48014 Chara braunii HOM05D004029 ORTHO05D004613 1.7e-209 734.2 1434 34.0
Psat3g119680 Pisum sativum HOM05D004029 ORTHO05D004613 5.4e-208 729.2 446 79.4
Dinv08328 Davidia involucrata HOM05D004029 ORTHO05D004613 1.5e-194 684.5 454 75.8
SEGI_15865 Sequoiadendron giganteum HOM05D004029 ORTHO05D004613 1.2e-167 595.1 490 62.2
TAR627G0431 Trochodendron aralioides HOM05D004029 ORTHO05D004613 1.2e-159 568.5 306 87.9
SHI21494 Sapria himalayana HOM05D004029 ORTHO05D004613 1.5e-120 438.7 316 67.4
Rhsim06G0194500 Rhododendron simsii HOM05D004029 ORTHO05D004613 7.6e-101 373.2 205 86.3
HPP92_020359 Vanilla planifolia HOM05D004029 ORTHO05D004613 1.5e-93 349.0 194 84.0
Pp3c3_4080 Physcomitrium patens HOM05D004029 ORTHO05D004613 4.9e-92 344.0 372 48.4
SEGI_37124 Sequoiadendron giganteum HOM05D004029 ORTHO05D004613 1.1e-91 342.8 316 58.5
SMO115G0239 Selaginella moellendorffii HOM05D004029 ORTHO05D004613 2.8e-87 328.2 261 62.5
Psat1g176800 Pisum sativum HOM05D004029 ORTHO05D004613 2.9e-84 318.2 220 73.6
Psat1g176880 Pisum sativum HOM05D004029 ORTHO05D004613 3.5e-82 311.2 216 73.1
Atru.chr2.2810 Acer truncatum HOM05D004029 ORTHO05D004613 7.9e-82 310.1 172 84.9
Dinv08326 Davidia involucrata HOM05D004029 ORTHO05D004613 1.8e-78 298.9 159 91.2
Lsat_1_v5_gn_3_80381 Lactuca sativa HOM05D004029 ORTHO05D004613 2.2e-76 292.0 259 59.8
Lsat_1_v5_gn_4_112941 Lactuca sativa HOM05D004029 ORTHO05D004613 2.2e-76 292.0 259 59.8
Lsat_1_v5_gn_7_74701 Lactuca sativa HOM05D004029 ORTHO05D004613 2.2e-76 292.0 259 59.8
Atru.chr2.2808 Acer truncatum HOM05D004029 ORTHO05D004613 4.0e-70 271.2 152 83.6
HPP92_020356 Vanilla planifolia HOM05D004029 ORTHO05D004613 1.0e-68 266.5 447 36.7
SEGI_39917 Sequoiadendron giganteum HOM05D004029 ORTHO05D004613 3.8e-68 264.6 262 53.8
Thhalv10015732m.g Eutrema salsugineum HOM05D004029 ORTHO05D004613 4.9e-68 264.2 186 72.6
Gohir.1Z049574 Gossypium hirsutum HOM05D004029 ORTHO05D004613 4.1e-62 244.6 170 72.4
Sed0014205 Sechium edule HOM05D004029 ORTHO05D004613 2.6e-61 241.9 182 69.8
Actinidia39414 Actinidia chinensis HOM05D004029 ORTHO05D004613 7.6e-61 240.4 153 79.7
ATR0693G140 Amborella trichopoda HOM05D004029 ORTHO05D004613 2.8e-55 221.9 132 77.3
ATR0693G350 Amborella trichopoda HOM05D004029 ORTHO05D004613 2.1e-50 205.7 147 68.7
Solyc07g063450.3 Solanum lycopersicum HOM05D000461 ORTHO05D001829 1.8e-49 202.6 205 49.8
Gohir.A11G282591 Gossypium hirsutum HOM05D004029 ORTHO05D004613 7.7e-45 187.2 136 66.9
Lsat_1_v5_gn_8_16361 Lactuca sativa HOM05D004029 ORTHO05D004613 1.7e-44 186.0 129 72.9
HPP92_020357 Vanilla planifolia HOM05D004029 ORTHO05D004613 1.1e-43 183.3 120 76.7
GSVIVG01015766001 Vitis vinifera HOM05D004029 ORTHO05D004613 1.2e-42 179.9 109 79.8
GSVIVG01016530001 Vitis vinifera HOM05D004029 ORTHO05D004613 1.0e-41 176.8 109 79.8
Dinv22372 Davidia involucrata HOM05D004029 ORTHO05D004613 3.9e-41 174.9 111 75.7
HPP92_027774 Vanilla planifolia HOM05D004029 ORTHO05D004613 6.7e-41 174.1 98 81.6
GSVIVG01005601001 Vitis vinifera HOM05D004029 ORTHO05D004613 4.4e-40 171.4 109 78.0
GSVIVG01006099001 Vitis vinifera HOM05D004029 ORTHO05D004613 4.4e-40 171.4 109 78.0
GSVIVG01030797001 Vitis vinifera HOM05D004029 ORTHO05D004613 4.1e-38 164.9 109 76.1
Psat7g242400 Pisum sativum HOM05D004029 ORTHO05D004613 1.6e-37 162.9 102 78.4
HPP92_027773 Vanilla planifolia HOM05D004029 ORTHO05D004613 2.2e-36 159.1 98 80.6
Gohir.D11G296250 Gossypium hirsutum HOM05D004029 ORTHO05D004613 3.3e-32 145.2 81 77.8
SEGI_16455 Sequoiadendron giganteum HOM05D004029 ORTHO05D004613 4.1e-30 138.3 78 78.2
Haze_01245 Corylus avellana HOM05D007775 ORTHO05D009858 2.0e-29 136.0 124 57.3
Lsat_1_v5_gn_8_16381 Lactuca sativa HOM05D004029 ORTHO05D004613 4.2e-27 128.3 87 69.0
Medtr4g126280 Medicago truncatula HOM05D004029 ORTHO05D004613 2.7e-26 125.6 65 86.2
Lsat_1_v5_gn_6_53560 Lactuca sativa HOM05D004029 ORTHO05D004613 1.4e-25 123.2 109 65.1
CBR_g48013 Chara braunii HOM05D004029 ORTHO05D004613 3.5e-21 108.6 107 46.7
Psat0ss25761g0120 Pisum sativum HOM05D000735 ORTHO05D004613 2.9e-20 105.5 90 61.1
SEGI_17451 Sequoiadendron giganteum HOM05D004029 ORTHO05D004613 1.5e-19 103.2 62 77.4
Cfa025671 Carpinus fangiana HOM05D004029 ORTHO05D004613 4.2e-19 101.7 694 22.2
MD16G1231300 Malus domestica HOM05D004029 ORTHO05D004613 6.1e-18 97.8 57 77.2
HPP92_020358 Vanilla planifolia HOM05D004029 ORTHO05D004613 4.4e-16 91.7 52 75.0
Lsat_1_v5_gn_8_148540 Lactuca sativa HOM05D004029 ORTHO05D004613 7.5e-16 90.9 81 55.6
Lsat_1_v5_gn_4_161921 Lactuca sativa HOM05D004029 ORTHO05D004613 1.0e-12 80.5 99 44.4
CSS0007909 Camellia sinensis var. sinensis HOM05D001136 ORTHO05D004613 2.9e-12 79.0 97 48.5
Cre01.g003500 Chlamydomonas reinhardtii HOM05D004029 ORTHO05D004613 2.9e-12 79.0 379 23.2
Pp3c3_4110 Physcomitrium patens HOM05D004029 ORTHO05D004613 8.6e-12 77.4 69 50.7
MBI16_g04070_MAGBIO Magnolia biondii HOM05D005084 ORTHO05D006254 5.8e-08 64.7 52 61.5
ATR0693G286 Amborella trichopoda HOM05D004029 ORTHO05D004613 2.4e-06 59.3 40 67.5
ATR0693G070 Amborella trichopoda HOM05D004029 ORTHO05D004613 5.4e-06 58.2 34 79.4


User provided reference genes

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