Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT11G2386 Cannabis sativa HOM05D005448 ORTHO05D006405 3.1e-165 585.1 306 100.0
CANSAT01G1259 Cannabis sativa HOM05D005448 ORTHO05D006405 1.4e-133 479.9 308 84.7
QL10p019149 Quercus lobata HOM05D005448 ORTHO05D006405 1.1e-96 357.5 306 63.4
Haze_07701 Corylus avellana HOM05D005448 ORTHO05D006405 8.4e-94 347.8 303 62.7
RcHm_v2.0_Chr4g0399581 Rosa chinensis HOM05D005448 ORTHO05D006405 5.4e-93 345.1 300 61.3
RcHm_v2.0_Chr7g0182771 Rosa chinensis HOM05D005448 ORTHO05D006405 7.8e-92 341.3 301 60.8
Potri.018G051500 Populus trichocarpa HOM05D005448 ORTHO05D006405 3.0e-91 339.3 293 62.5
Prupe.7G041400 Prunus persica HOM05D005448 ORTHO05D006405 6.6e-91 338.2 315 59.0
Dinv10698 Davidia involucrata HOM05D005448 ORTHO05D006405 5.6e-90 335.1 270 64.4
Sabra18G0047800 Salix brachista HOM05D005448 ORTHO05D006405 7.3e-90 334.7 294 60.5
Actinidia38176 Actinidia chinensis HOM05D005448 ORTHO05D006405 2.1e-89 333.2 302 58.9
MD17G1029400 Malus domestica HOM05D005448 ORTHO05D006405 3.1e-88 329.3 270 62.6
Gohir.A11G033100 Gossypium hirsutum HOM05D005448 ORTHO05D006405 4.0e-88 328.9 299 59.5
Atru.chr12.1057 Acer truncatum HOM05D005448 ORTHO05D006405 5.3e-88 328.6 287 63.1
Thecc.03G099500 Theobroma cacao HOM05D005448 ORTHO05D006405 6.9e-88 328.2 296 62.5
CiPaw.11G051600 Carya illinoinensis HOM05D005448 ORTHO05D006405 1.5e-87 327.0 304 58.9
Ciclev10020839m.g Citrus clementina HOM05D005448 ORTHO05D006405 1.5e-87 327.0 316 56.3
FvH4_5g14050 Fragaria vesca HOM05D005448 ORTHO05D006405 2.6e-87 326.2 297 59.3
Gohir.D11G036400 Gossypium hirsutum HOM05D005448 ORTHO05D006405 3.4e-87 325.9 296 60.1
Gorai.007G039200 Gossypium raimondii HOM05D005448 ORTHO05D006405 3.4e-87 325.9 296 60.1
Cpa.g.sc94.25 Carica papaya HOM05D005448 ORTHO05D006405 5.8e-87 325.1 297 58.9
GSVIVG01007889001 Vitis vinifera HOM05D005448 ORTHO05D006405 5.8e-87 325.1 303 61.1
Duzib205G1002 Durio zibethinus HOM05D005448 ORTHO05D006405 6.4e-86 321.6 300 57.7
FAN08G1797 Fragaria x ananassa HOM05D005448 ORTHO05D006405 8.4e-86 321.2 300 59.7
CsaV3_6G039380 Cucumis sativus L. HOM05D005448 ORTHO05D006405 3.2e-85 319.3 299 59.2
GSVIVG01007888001 Vitis vinifera HOM05D005448 ORTHO05D006405 1.6e-84 317.0 303 58.7
FAN18G0267 Fragaria x ananassa HOM05D005448 ORTHO05D006405 2.3e-83 313.2 297 58.2
PGR044G0604 Punica granatum HOM05D005448 ORTHO05D006405 6.6e-83 311.6 274 59.1
MELO3C014255.2 Cucumis melo HOM05D005448 ORTHO05D006405 1.3e-81 307.4 298 57.4
Lalb_Chr07g0178271 Lupinus albus HOM05D005448 ORTHO05D006405 1.6e-81 307.0 303 56.1
Eucgr.F03643 Eucalyptus grandis HOM05D005448 ORTHO05D006405 9.0e-80 301.2 294 56.1
Lj5A104G41 Lonicera japonica HOM05D005448 ORTHO05D006405 2.0e-79 300.1 289 56.7
HanXRQChr05g0157251 Helianthus annuus HOM05D005448 ORTHO05D006405 5.8e-79 298.5 280 57.5
Sc25g0001780 Simmondsia chinensis HOM05D005448 ORTHO05D006405 1.3e-78 297.4 307 53.1
Glyma.05G022400 Glycine max HOM05D005448 ORTHO05D006405 2.9e-78 296.2 306 53.3
TPR.G2023 Trifolium pratense HOM05D005448 ORTHO05D006405 1.1e-77 294.3 301 53.2
Manes.06G086000 Manihot esculenta HOM05D005448 ORTHO05D006405 1.4e-77 293.9 273 58.2
Medtr4g109400 Medicago truncatula HOM05D005448 ORTHO05D006405 1.4e-77 293.9 305 53.8
MSTRG.11359 Avicennia marina HOM05D005448 ORTHO05D006405 3.2e-77 292.7 303 54.8
Rhsim12G0151600 Rhododendron simsii HOM05D005448 ORTHO05D006405 3.2e-77 292.7 271 58.7
Nn3g17421 Nelumbo nucifera HOM05D005448 ORTHO05D006405 7.1e-77 291.6 302 53.0
SGA_v2.0_scaffold313G48306 Striga asiatica HOM05D005448 ORTHO05D006405 1.6e-76 290.4 289 54.0
Hund02597 Selenicereus undatus HOM05D005448 ORTHO05D006405 2.1e-76 290.0 285 56.1
TWI53G0232 Tripterygium wilfordii HOM05D005448 ORTHO05D006405 3.0e-75 286.2 270 56.3
Cc04_g13190 Coffea canephora HOM05D005448 ORTHO05D006405 8.7e-75 284.6 310 54.2
Cc04_g16850 Coffea canephora HOM05D005448 ORTHO05D006405 1.1e-74 284.3 310 54.2
ECA246G3555 Erigeron canadensis HOM05D005448 ORTHO05D006405 1.5e-74 283.9 274 54.4
Sp6g34990 Schrenkiella parvula HOM05D005448 ORTHO05D006405 1.9e-74 283.5 268 56.0
CSS0038496 Camellia sinensis var. sinensis HOM05D005448 ORTHO05D006405 4.3e-74 282.3 302 53.6
AL6G18290 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 5.6e-74 282.0 287 54.4
Sopen06g026800 Solanum pennellii HOM05D005448 ORTHO05D006405 1.3e-73 280.8 318 52.5
Psat4g047920 Pisum sativum HOM05D005448 ORTHO05D006405 2.1e-73 280.0 304 51.0
TAR636G2978 Trochodendron aralioides HOM05D005448 ORTHO05D006405 3.7e-73 279.3 301 52.2
CARHR205240 Cardamine hirsuta HOM05D005448 ORTHO05D006405 6.2e-73 278.5 299 54.5
FAN13G0193 Fragaria x ananassa HOM05D005448 ORTHO05D006405 1.8e-72 276.9 262 58.0
Lj4g0022538 Lotus japonicus HOM05D005448 ORTHO05D006405 1.8e-72 276.9 309 52.1
Phvul.003G185700 Phaseolus vulgaris HOM05D005448 ORTHO05D006405 5.3e-72 275.4 308 50.0
Migut.E01012 Erythranthe guttata HOM05D005448 ORTHO05D006405 6.9e-72 275.0 280 54.3
BraA02t04938Z Brassica rapa HOM05D005448 ORTHO05D006405 1.5e-71 273.9 265 54.3
Thhalv10014193m.g Eutrema salsugineum HOM05D005448 ORTHO05D006405 2.0e-71 273.5 268 55.2
AT5G07950 Arabidopsis thaliana HOM05D005448 ORTHO05D006405 2.6e-71 273.1 299 53.8
THA.LOC104801284 Tarenaya hassleriana HOM05D005448 ORTHO05D006405 3.4e-71 272.7 283 53.7
Aa31LG3G18560 Aethionema arabicum HOM05D005448 ORTHO05D006405 4.5e-71 272.3 299 51.8
BraA10t44915Z Brassica rapa HOM05D001913 ORTHO05D006405 5.8e-71 271.9 277 53.1
BcaB05g21593 Brassica carinata HOM05D005448 ORTHO05D006405 1.7e-70 270.4 295 49.8
vmacro16506 Vaccinium macrocarpon HOM05D005448 ORTHO05D006405 1.7e-70 270.4 374 48.7
BolC2t06299H Brassica oleracea HOM05D005448 ORTHO05D006405 3.8e-70 269.2 281 52.3
Carub.0006s0685 Capsella rubella HOM05D005448 ORTHO05D006405 4.9e-70 268.9 297 51.9
PGSC0003DMG400033055 Solanum tuberosum HOM05D005448 ORTHO05D006405 4.9e-70 268.9 306 52.3
C02p03370 Brassica napus HOM05D005448 ORTHO05D006405 8.4e-70 268.1 265 53.6
TAR371G1280 Trochodendron aralioides HOM05D005448 ORTHO05D006405 1.1e-69 267.7 312 50.0
Solyc06g069510.3 Solanum lycopersicum HOM05D005448 ORTHO05D006405 1.4e-69 267.3 304 52.6
MD14G1210300 Malus domestica HOM05D005448 ORTHO05D006405 2.5e-69 266.5 292 52.4
Dinv17396 Davidia involucrata HOM05D005448 ORTHO05D006405 9.3e-69 264.6 219 63.5
Aqoxy3G03610 Aquilegia oxysepala HOM05D005448 ORTHO05D006405 1.2e-68 264.2 268 54.9
arahy.Tifrunner.gnm1.ann1.6AQ98N Arachis hypogaea HOM05D005448 ORTHO05D006405 1.6e-68 263.8 285 51.6
CAN.G587.40 Capsicum annuum HOM05D005448 ORTHO05D006405 1.0e-67 261.2 306 48.4
arahy.Tifrunner.gnm1.ann1.VF11UZ Arachis hypogaea HOM05D005448 ORTHO05D006405 3.0e-67 259.6 285 51.2
ClCG04G008840 Citrullus lanatus HOM05D005448 ORTHO05D006405 3.0e-67 259.6 298 52.0
SHI27027 Sapria himalayana HOM05D005448 ORTHO05D006405 3.9e-67 259.2 285 50.9
C09p68980 Brassica napus HOM05D006409 ORTHO05D006405 4.3e-66 255.8 269 51.7
Oeu001027.1 Olea europaea HOM05D005448 ORTHO05D006405 4.3e-66 255.8 255 54.9
BcaC03g13203 Brassica carinata HOM05D005448 ORTHO05D006405 1.5e-63 247.3 311 46.6
MBI17_g24520_MAGBIO Magnolia biondii HOM05D005448 ORTHO05D006405 1.5e-63 247.3 287 49.8
PSO675G8542 Papaver somniferum HOM05D005448 ORTHO05D006405 2.0e-63 246.9 306 48.4
Nitab4.5_0001688g0100 Nicotiana tabacum HOM05D005448 ORTHO05D006405 7.6e-63 245.0 279 53.0
A10p28660 Brassica napus HOM05D006409 ORTHO05D008250 1.3e-62 244.2 270 50.4
ATR0064G115 Amborella trichopoda HOM05D005448 ORTHO05D006405 6.5e-62 241.9 273 49.5
AUR62021579 Chenopodium quinoa HOM05D005448 ORTHO05D006405 1.1e-61 241.1 295 48.5
Peaxi162Scf00013g00627 Petunia axillaris HOM05D005448 ORTHO05D006405 1.1e-61 241.1 307 47.2
TWI73G0142 Tripterygium wilfordii HOM05D005448 ORTHO05D006405 7.1e-61 238.4 304 46.7
AUR62008511 Chenopodium quinoa HOM05D005448 ORTHO05D006405 3.0e-59 233.0 223 55.6
Nitab4.5_0000361g0060 Nicotiana tabacum HOM05D005448 ORTHO05D006405 1.9e-58 230.3 281 50.2
BcaC06g32511 Brassica carinata HOM05D001913 ORTHO05D008250 6.9e-56 221.9 259 48.3
DCAR_024881 Daucus carota HOM05D005448 ORTHO05D006405 3.4e-55 219.5 222 51.4
Os03g0213200 Oryza sativa ssp. japonica HOM05D005448 ORTHO05D006405 1.3e-54 217.6 289 43.3
PSO541G3212 Papaver somniferum HOM05D005448 ORTHO05D006405 1.4e-53 214.2 304 44.4
unitig_22.g5417 Utricularia gibba HOM05D005448 ORTHO05D006405 2.5e-53 213.4 279 44.4
Zm00001eb400290 Zea mays HOM05D005448 ORTHO05D006405 4.3e-50 202.6 269 42.8
Prupe.1G213800 Prunus persica HOM05D005448 ORTHO05D006405 9.7e-50 201.4 193 56.5
Ah.02g113960 Amaranthus hybridus HOM05D005448 ORTHO05D006405 1.3e-49 201.1 278 45.3
Ca_21785_v3 Cicer arietinum L. HOM05D005448 ORTHO05D006405 8.2e-49 198.4 192 57.8
Zm00001eb400320 Zea mays HOM05D005448 ORTHO05D006405 1.4e-48 197.6 286 42.7
Sed0024402 Sechium edule HOM05D005448 ORTHO05D006405 3.6e-44 183.0 211 54.5
DCAR_011598 Daucus carota HOM05D005448 ORTHO05D006405 1.8e-43 180.6 244 43.0
HPP92_004716 Vanilla planifolia HOM05D005448 ORTHO05D006405 4.1e-40 169.5 222 44.6
VMungo1215G2784 Vigna mungo HOM05D005448 ORTHO05D006405 1.5e-37 161.0 170 47.1
FvH4_5g14150 Fragaria vesca HOM05D005448 ORTHO05D006405 4.8e-33 146.0 135 54.8
Mapoly0011s0155 Marchantia polymorpha HOM05D005448 ORTHO05D006405 2.4e-32 143.7 270 37.8
SEGI_17550 Sequoiadendron giganteum HOM05D005448 ORTHO05D006405 5.5e-29 132.5 155 47.7
SMO356G0523 Selaginella moellendorffii HOM05D005448 ORTHO05D006405 9.4e-29 131.7 261 33.0
AL3G46610 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 8.3e-25 118.6 119 54.6
AL3G43910 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 7.7e-23 112.1 130 51.5
Lsat_1_v5_gn_5_23221 Lactuca sativa HOM05D005448 ORTHO05D006405 1.3e-22 111.3 204 35.3
VMungo1215G1798 Vigna mungo HOM05D005448 ORTHO05D006405 5.0e-22 109.4 110 58.2
AL1G28800 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 1.1e-21 108.2 211 35.5
BolC4t27763H Brassica oleracea HOM05D005448 ORTHO05D006405 3.2e-21 106.7 193 39.9
BcaC02g07836 Brassica carinata HOM05D005448 ORTHO05D006405 3.6e-20 103.2 180 40.6
C04p62800 Brassica napus HOM05D005448 ORTHO05D006405 2.0e-18 97.4 176 38.6
CBR_g39231 Chara braunii HOM05D005448 ORTHO05D006405 1.3e-17 94.7 163 37.4
AL1G43330 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 4.9e-17 92.8 206 33.5
AL4G20140 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 4.9e-17 92.8 206 33.5
Pp3c17_6410 Physcomitrium patens HOM05D005448 ORTHO05D006405 1.2e-15 88.2 227 34.4
Glyma.17G077251 Glycine max HOM05D005448 ORTHO05D006405 7.7e-15 85.5 94 47.9
HPP92_004728 Vanilla planifolia HOM05D005448 ORTHO05D006405 1.0e-14 85.1 168 37.5
VMungo0464G0610 Vigna mungo HOM05D005448 ORTHO05D006405 6.6e-14 82.4 86 53.5
SEGI_09353 Sequoiadendron giganteum HOM05D005448 ORTHO05D006405 1.9e-13 80.9 85 48.2
GSVIVG01007748001 Vitis vinifera HOM05D005448 ORTHO05D006405 1.6e-12 77.8 62 64.5
AL6G22380 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 4.7e-12 76.3 149 37.6
GSVIVG01007746001 Vitis vinifera HOM05D005448 ORTHO05D006405 1.8e-11 74.3 62 56.5
BolC9t59642H Brassica oleracea HOM05D005448 ORTHO05D006405 2.3e-11 73.9 67 56.7
Carub.0006s0684 Capsella rubella HOM05D005448 ORTHO05D006405 1.2e-10 71.6 174 29.3
AL3G19900 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 4.4e-10 69.7 63 55.6
AL7G18100 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 4.4e-10 69.7 63 55.6
Actinidia19002 Actinidia chinensis HOM05D005448 ORTHO05D006405 7.5e-10 68.9 69 58.0
A04p25650 Brassica napus HOM05D005448 ORTHO05D006405 4.9e-09 66.2 78 51.3
BraA04t18069Z Brassica rapa HOM05D005448 ORTHO05D006405 4.9e-09 66.2 78 51.3
VMungo0647G2219 Vigna mungo HOM05D005448 ORTHO05D006405 5.4e-08 62.8 178 30.3
AL5G40680 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 2.7e-07 60.5 131 36.6
VMungo1127G0437 Vigna mungo HOM05D005448 ORTHO05D006405 5.9e-07 59.3 158 30.4
VMungo0720G0209 Vigna mungo HOM05D005448 ORTHO05D006405 1.7e-06 57.8 89 39.3


User provided reference genes

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