Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT11G2085 Cannabis sativa HOM05D000751 ORTHO05D005618 0.0e+00 1366.3 761 100.0
GSVIVG01010908001 Vitis vinifera HOM05D000751 ORTHO05D005618 3.6e-263 911.8 774 62.8
TAR636G3589 Trochodendron aralioides HOM05D000751 ORTHO05D005618 1.6e-255 886.3 792 60.2
CSS0048015 Camellia sinensis var. sinensis HOM05D000751 ORTHO05D005618 8.3e-252 874.0 778 59.9
Aqoxy2G02196 Aquilegia oxysepala HOM05D000751 ORTHO05D005618 3.0e-249 865.5 769 60.3
Actinidia06357 Actinidia chinensis HOM05D000751 ORTHO05D005618 5.6e-248 861.3 780 60.1
Ciclev10030781m.g Citrus clementina HOM05D000751 ORTHO05D005618 9.9e-245 850.5 763 59.9
Prupe.1G079600 Prunus persica HOM05D000751 ORTHO05D005618 2.4e-243 845.9 774 61.4
Nn8g40996 Nelumbo nucifera HOM05D000751 ORTHO05D005618 4.2e-243 845.1 592 70.4
TWI38G2172 Tripterygium wilfordii HOM05D000751 ORTHO05D005618 4.2e-243 845.1 762 62.2
Sed0012322 Sechium edule HOM05D000751 ORTHO05D005618 7.1e-243 844.3 579 70.6
Cfa016755 Carpinus fangiana HOM05D000751 ORTHO05D005618 6.0e-242 841.3 712 62.2
MELO3C017440.2 Cucumis melo HOM05D000751 ORTHO05D005618 7.8e-242 840.9 580 70.3
Hma1.2p1_0207F.1_g087810 Hydrangea macrophylla HOM05D000751 ORTHO05D005618 1.7e-241 839.7 775 59.0
Thecc.09G180200 Theobroma cacao HOM05D000751 ORTHO05D005618 6.6e-241 837.8 774 58.3
Duzib168G1036 Durio zibethinus HOM05D000751 ORTHO05D005618 1.5e-240 836.6 771 58.2
CiPaw.14G110300 Carya illinoinensis HOM05D000751 ORTHO05D005618 3.3e-240 835.5 760 61.3
Gorai.009G003500 Gossypium raimondii HOM05D000751 ORTHO05D005618 1.2e-239 833.6 585 69.4
Gohir.D05G003900 Gossypium hirsutum HOM05D000751 ORTHO05D005618 2.4e-238 829.3 585 69.7
Manes.17G002500 Manihot esculenta HOM05D000751 ORTHO05D005618 2.4e-238 829.3 720 61.9
Atru.chr11.2504 Acer truncatum HOM05D000751 ORTHO05D005618 3.1e-238 828.9 773 62.9
CsaV3_1G031770 Cucumis sativus L. HOM05D000751 ORTHO05D005618 4.0e-238 828.6 580 69.7
RcHm_v2.0_Chr4g0400251 Rosa chinensis HOM05D000751 ORTHO05D005618 4.0e-238 828.6 590 69.3
Gohir.A05G003500 Gossypium hirsutum HOM05D000751 ORTHO05D005618 5.3e-238 828.2 585 68.9
PSO478G0715 Papaver somniferum HOM05D000751 ORTHO05D005618 6.9e-238 827.8 755 59.6
Eucgr.A01411 Eucalyptus grandis HOM05D000751 ORTHO05D005618 1.2e-237 827.0 769 59.0
MBI16_g18209_MAGBIO Magnolia biondii HOM05D000751 ORTHO05D000889 7.6e-237 824.3 586 70.3
PSO017G1776 Papaver somniferum HOM05D000751 ORTHO05D005618 2.4e-235 819.3 765 60.5
Potri.003G010000 Populus trichocarpa HOM05D000751 ORTHO05D005618 2.3e-233 812.8 590 67.3
FvH4_4g07640 Fragaria vesca HOM05D000751 ORTHO05D005618 8.7e-233 810.8 780 62.1
Cpa.g.sc86.27 Carica papaya HOM05D000751 ORTHO05D005618 1.5e-232 810.1 584 67.8
Cc06_g22130 Coffea canephora HOM05D000751 ORTHO05D005618 1.3e-231 807.0 586 67.7
Sc06g0007900 Simmondsia chinensis HOM05D000751 ORTHO05D005618 1.1e-230 803.9 546 70.5
Nitab4.5_0000074g0030 Nicotiana tabacum HOM05D000751 ORTHO05D005618 6.9e-230 801.2 585 68.0
EL10Ac2g02594 Beta vulgaris HOM05D000751 ORTHO05D005618 3.8e-228 795.4 588 64.6
EL10As14g24084 Beta vulgaris HOM05D000751 ORTHO05D005618 1.1e-227 793.9 588 64.3
Peaxi162Scf00324g00731 Petunia axillaris HOM05D000751 ORTHO05D005618 1.1e-227 793.9 585 68.0
Hund24686 Selenicereus undatus HOM05D000751 ORTHO05D005618 9.3e-227 790.8 619 62.0
THA.LOC104813512 Tarenaya hassleriana HOM05D000751 ORTHO05D005618 1.9e-224 783.1 764 60.3
FAN07G1720 Fragaria x ananassa HOM05D000751 ORTHO05D005618 2.0e-221 773.1 808 58.8
AL1G30040 Arabidopsis lyrata HOM05D000751 ORTHO05D005618 5.8e-221 771.5 764 57.5
C08p18130 Brassica napus HOM05D000751 ORTHO05D005618 2.2e-220 769.6 759 57.3
A08p30790 Brassica napus HOM05D000751 ORTHO05D005618 2.1e-218 763.1 762 55.5
BraA08t35010Z Brassica rapa HOM05D000751 ORTHO05D005618 3.5e-218 762.3 753 57.5
Thhalv10006892m.g Eutrema salsugineum HOM05D000751 ORTHO05D005618 7.9e-218 761.1 765 57.1
Carub.0001s1742 Capsella rubella HOM05D000751 ORTHO05D005618 1.3e-217 760.4 776 56.4
BolC8t49447H Brassica oleracea HOM05D000751 ORTHO05D005618 1.5e-216 756.9 770 56.1
Lalb_Chr02g0148081 Lupinus albus HOM05D000751 ORTHO05D005618 2.5e-216 756.1 590 64.9
Lsat_1_v5_gn_7_56501 Lactuca sativa HOM05D000751 ORTHO05D005618 7.4e-216 754.6 766 54.4
Lj6g0015551 Lotus japonicus HOM05D000751 ORTHO05D005618 9.6e-216 754.2 580 65.2
AT1G17690 Arabidopsis thaliana HOM05D000751 ORTHO05D005618 1.3e-215 753.8 770 56.8
Glyma.09G057700 Glycine max HOM05D000751 ORTHO05D005618 1.3e-215 753.8 579 64.8
ECA240G3678 Erigeron canadensis HOM05D000751 ORTHO05D005618 3.7e-215 752.3 584 64.4
Nitab4.5_0008918g0010 Nicotiana tabacum HOM05D000751 ORTHO05D005618 6.2e-215 751.5 585 65.1
CARHR018290 Cardamine hirsuta HOM05D000751 ORTHO05D005618 1.4e-214 750.4 759 58.8
MSTRG.26530 Avicennia marina HOM05D000751 ORTHO05D005618 3.1e-214 749.2 767 53.6
ClCG06G013510 Citrullus lanatus HOM05D000751 ORTHO05D005618 4.0e-214 748.8 741 54.7
VMungo1309G0231 Vigna mungo HOM05D000751 ORTHO05D005618 9.0e-214 747.7 590 64.1
Migut.L01901 Erythranthe guttata HOM05D000751 ORTHO05D005618 2.0e-213 746.5 587 61.8
Aa31LG7G2520 Aethionema arabicum HOM05D000751 ORTHO05D005618 2.6e-213 746.1 586 63.1
Phvul.009G238100 Phaseolus vulgaris HOM05D000751 ORTHO05D005618 3.4e-213 745.7 589 63.2
FAN17G2112 Fragaria x ananassa HOM05D000751 ORTHO05D005618 4.9e-212 741.9 784 59.2
Sp4g05240 Schrenkiella parvula HOM05D000751 ORTHO05D005618 2.5e-211 739.6 567 63.8
DCAR_007397 Daucus carota HOM05D000751 ORTHO05D005618 7.9e-210 734.6 734 57.8
TPR.G9024 Trifolium pratense HOM05D000751 ORTHO05D005618 1.9e-208 729.9 581 64.2
SGA_v2.0_scaffold595G53113 Striga asiatica HOM05D000751 ORTHO05D005618 2.2e-204 716.5 584 59.6
Thhalv10023137m.g Eutrema salsugineum HOM05D000751 ORTHO05D005618 3.2e-203 712.6 591 61.1
ATR0626G151 Amborella trichopoda HOM05D000751 ORTHO05D005618 1.0e-201 707.6 726 50.8
Sopen07g005110 Solanum pennellii HOM05D000751 ORTHO05D005618 3.7e-199 699.1 523 65.8
HanXRQChr03g0068331 Helianthus annuus HOM05D000751 ORTHO05D005618 8.2e-199 698.0 743 56.7
FAN12G3496 Fragaria x ananassa HOM05D000751 ORTHO05D005618 1.4e-198 697.2 780 56.7
Cc06_g21130 Coffea canephora HOM05D000751 ORTHO05D005618 1.5e-197 693.7 530 64.5
arahy.Tifrunner.gnm1.ann1.QPM7FK Arachis hypogaea HOM05D000751 ORTHO05D005618 4.5e-197 692.2 580 60.7
vmacro08789 Vaccinium macrocarpon HOM05D000751 ORTHO05D005618 7.7e-197 691.4 1054 42.2
Medtr2g036890 Medicago truncatula HOM05D000751 ORTHO05D005618 3.2e-195 686.0 584 60.6
Medtr2g012650 Medicago truncatula HOM05D000751 ORTHO05D005618 6.1e-194 681.8 580 60.7
Rhsim01G0197100 Rhododendron simsii HOM05D000751 ORTHO05D005618 4.8e-191 672.2 836 49.9
CDE06G1960 Ceratophyllum demersum HOM05D000751 ORTHO05D005618 8.2e-191 671.4 505 64.4
SalBow1G4534 Salvia bowleyana HOM05D000751 ORTHO05D005618 2.0e-189 666.8 588 56.5
SalBow6G0847 Salvia bowleyana HOM05D000751 ORTHO05D005618 6.1e-186 655.2 588 56.3
unitig_8.g3549 Utricularia gibba HOM05D000751 ORTHO05D005618 1.2e-181 641.0 587 55.0
Zm00001eb406370 Zea mays HOM05D000751 ORTHO05D005618 3.8e-180 636.0 586 54.4
Aqoxy2G02322 Aquilegia oxysepala HOM05D000751 ORTHO05D005618 3.2e-179 632.9 583 59.3
AUR62014975 Chenopodium quinoa HOM05D000751 ORTHO05D005618 2.7e-178 629.8 608 53.3
arahy.Tifrunner.gnm1.ann1.4Y102Q Arachis hypogaea HOM05D000751 ORTHO05D005618 1.2e-173 614.4 582 55.7
Os05g0295100 Oryza sativa ssp. japonica HOM05D000751 ORTHO05D005618 7.7e-173 611.7 594 53.9
Oeu047314.3 Olea europaea HOM05D000751 ORTHO05D005618 4.4e-168 595.9 610 52.1
AagrBONN_evm.TU.Sc2ySwM_369.592 Anthoceros agrestis HOM05D000751 ORTHO05D005618 2.8e-167 593.2 590 51.4
SalBow6G2294 Salvia bowleyana HOM05D000751 ORTHO05D005618 1.8e-166 590.5 643 50.2
Carub.0003s1065 Capsella rubella HOM05D000751 ORTHO05D005618 6.6e-164 582.0 585 51.8
MD03G1036400 Malus domestica HOM05D000751 ORTHO05D005618 8.0e-162 575.1 595 56.3
DCAR_007396 Daucus carota HOM05D000751 ORTHO05D005618 4.4e-160 569.3 536 55.8
Mapoly0074s0025 Marchantia polymorpha HOM05D000751 ORTHO05D005618 5.4e-158 562.4 589 46.9
SMO296G0020 Selaginella moellendorffii HOM05D000751 ORTHO05D005618 2.7e-157 560.1 582 49.1
Pp3c10_17670 Physcomitrium patens HOM05D000751 ORTHO05D005618 1.5e-155 554.3 590 49.0
MD13G1251200 Malus domestica HOM05D000751 ORTHO05D005618 1.3e-148 531.2 379 69.7
CDE02G3188 Ceratophyllum demersum HOM05D000751 ORTHO05D005618 3.3e-147 526.6 394 65.7
CBR_g38171 Chara braunii HOM05D000751 ORTHO05D005618 7.8e-141 505.4 617 45.1
Aqoxy1G02673 Aquilegia oxysepala HOM05D000751 ORTHO05D005618 4.4e-136 489.6 537 52.5
Glyma.15G163800 Glycine max HOM05D000751 ORTHO05D005618 2.1e-133 480.7 407 60.7
SalBow6G6994 Salvia bowleyana HOM05D000751 ORTHO05D005618 4.4e-128 463.0 576 44.8
Cc10_g11360 Coffea canephora HOM05D000751 ORTHO05D005618 7.8e-125 452.2 712 40.7
CAN.G266.4 Capsicum annuum HOM05D000751 ORTHO05D005618 6.9e-121 439.1 318 67.3
SEGI_35111 Sequoiadendron giganteum HOM05D000751 ORTHO05D005618 2.6e-120 437.2 291 70.1
CAN.G193.38 Capsicum annuum HOM05D000751 ORTHO05D005618 7.6e-120 435.6 367 60.8
AUR62030665 Chenopodium quinoa HOM05D000751 ORTHO05D005618 1.9e-118 431.0 332 63.6
HPP92_028564 Vanilla planifolia HOM05D000751 ORTHO05D005618 4.8e-114 416.4 336 62.2
Dinv26447 Davidia involucrata HOM05D000751 ORTHO05D005618 1.2e-112 411.8 454 57.7
Hma1.2p1_0909F.1_g235820 Hydrangea macrophylla HOM05D000751 ORTHO05D005618 4.2e-102 376.7 557 42.2
SMO174G0270 Selaginella moellendorffii HOM05D000751 ORTHO05D005618 1.2e-101 375.2 501 42.3
Cre04.g218300 Chlamydomonas reinhardtii HOM05D000751 ORTHO05D005618 1.9e-99 367.9 437 43.2
BcaB05g23995 Brassica carinata HOM05D000751 ORTHO05D005618 1.3e-95 355.1 481 43.7
MCO16G456 Micromonas commoda HOM05D000751 ORTHO05D005618 1.4e-94 351.7 526 38.2
BolC2t08163H Brassica oleracea HOM05D000751 ORTHO05D005618 1.1e-91 342.0 359 52.1
COL.COLO4_25458 Corchorus olitorius HOM05D000751 ORTHO05D005618 5.3e-81 306.6 517 40.6
Cfa022413 Carpinus fangiana HOM05D000751 ORTHO05D005618 1.4e-78 298.5 504 36.7
Ca_05496_v3 Cicer arietinum L. HOM05D000751 ORTHO05D005618 9.4e-78 295.8 265 58.5
Psat4g182200 Pisum sativum HOM05D000751 ORTHO05D005618 9.7e-75 285.8 316 50.9
PRCOL_00003641 Prasinoderma coloniale HOM05D000751 ORTHO05D005618 1.0e-68 265.8 577 31.2
HPP92_003076 Vanilla planifolia HOM05D000751 ORTHO05D005618 8.8e-68 262.7 215 62.8
Cc06_g21120 Coffea canephora HOM05D000751 ORTHO05D005618 8.5e-63 246.1 156 75.6
Nn2g10858 Nelumbo nucifera HOM05D000751 ORTHO05D005618 8.0e-61 239.6 152 73.7
SEGI_01124 Sequoiadendron giganteum HOM05D000751 ORTHO05D005618 1.5e-59 235.3 147 74.1
AUR62024882 Chenopodium quinoa HOM05D000751 ORTHO05D005618 2.4e-57 228.0 192 54.2
Solyc07g009350.4 Solanum lycopersicum HOM05D000751 ORTHO05D005618 1.3e-55 222.2 181 60.2
arahy.Tifrunner.gnm1.ann1.EK4LKE Arachis hypogaea HOM05D000751 ORTHO05D005618 5.0e-55 220.3 147 73.5
Haze_19748 Corylus avellana HOM05D000751 ORTHO05D005618 3.2e-54 217.6 290 46.9
HPP92_028565 Vanilla planifolia HOM05D000751 ORTHO05D005618 7.2e-54 216.5 134 76.9
Medtr8g466490 Medicago truncatula HOM05D000751 ORTHO05D005618 1.2e-51 209.1 287 41.8
Psat4g047120 Pisum sativum HOM05D000751 ORTHO05D005618 4.1e-49 200.7 204 53.9
BcaC03g14585 Brassica carinata HOM05D000751 ORTHO05D005618 5.4e-49 200.3 286 45.5
CAN.G266.3 Capsicum annuum HOM05D000751 ORTHO05D005618 1.6e-48 198.7 207 50.7
Medtr4g415340 Medicago truncatula HOM05D000751 ORTHO05D005618 1.6e-48 198.7 203 53.7
SEGI_01043 Sequoiadendron giganteum HOM05D000751 ORTHO05D005618 2.3e-47 194.9 198 55.1
MD13G1251100 Malus domestica HOM05D000751 ORTHO05D005618 2.6e-43 181.4 369 41.7
COL.COLO4_25459 Corchorus olitorius HOM05D000751 ORTHO05D005618 4.0e-36 157.5 118 68.6
Medtr8g466500 Medicago truncatula HOM05D000751 ORTHO05D005618 8.3e-34 149.8 230 42.2
Aqoxy3G01439 Aquilegia oxysepala HOM05D000751 ORTHO05D005618 5.4e-33 147.1 92 76.1
Sabra15G0073700 Salix brachista HOM05D000810 ORTHO05D005618 1.0e-31 142.9 292 34.9
Nn2g10857 Nelumbo nucifera HOM05D000751 ORTHO05D005618 1.3e-31 142.5 84 79.8
Hma1.2p1_2432F.1_g322050 Hydrangea macrophylla HOM05D000751 ORTHO05D005618 1.2e-29 136.0 277 33.6
Psat4g182280 Pisum sativum HOM05D000751 ORTHO05D005618 1.5e-27 129.0 83 73.5
Sc06g0007910 Simmondsia chinensis HOM05D000751 ORTHO05D005618 5.8e-27 127.1 285 31.6
SEGI_01614 Sequoiadendron giganteum HOM05D000751 ORTHO05D005618 4.9e-26 124.0 83 66.3
Aqoxy2G02180 Aquilegia oxysepala HOM05D000751 ORTHO05D005618 1.6e-24 119.0 115 58.3
CAN.G101.3 Capsicum annuum HOM05D000751 ORTHO05D005618 1.7e-23 115.5 107 59.8
Hma1.2p1_2432F.1_g322060 Hydrangea macrophylla HOM05D000751 ORTHO05D005618 1.1e-22 112.8 86 61.6
Aqoxy125s004 Aquilegia oxysepala HOM05D000751 ORTHO05D005618 5.6e-22 110.5 100 60.0
Gorai.003G081200 Gossypium raimondii HOM05D000751 ORTHO05D005618 9.5e-22 109.8 70 75.7
Sopen07g005100 Solanum pennellii HOM05D000002 ORTHO05D000001 1.5e-19 102.4 70 72.9
Hma1.2p1_2432F.1_g322070 Hydrangea macrophylla HOM05D000751 ORTHO05D005618 6.6e-15 87.0 98 49.0
HPP92_003077 Vanilla planifolia HOM05D000751 ORTHO05D005618 1.5e-14 85.9 87 57.5
Aqoxy1G02674 Aquilegia oxysepala HOM05D000751 ORTHO05D005618 6.4e-10 70.5 97 41.2
MD13G1245100 Malus domestica HOM05D000751 ORTHO05D005618 6.6e-07 60.5 104 38.5


User provided reference genes

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