Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT11G2039 Cannabis sativa HOM05D004372 ORTHO05D004331 2.3e-37 158.3 75 100.0
MD04G1131100 Malus domestica HOM05D004372 ORTHO05D004331 1.3e-19 99.4 61 68.9
Prupe.6G257600 Prunus persica HOM05D004372 ORTHO05D004331 1.7e-19 99.0 61 70.5
FAN02G2532 Fragaria x ananassa HOM05D004372 ORTHO05D004331 9.1e-18 93.2 65 64.6
FAN09G4335 Fragaria x ananassa HOM05D004372 ORTHO05D004331 2.0e-17 92.0 62 67.7
MD12G1144200 Malus domestica HOM05D004372 ORTHO05D004331 4.5e-17 90.9 59 66.1
RcHm_v2.0_Chr3g0466321 Rosa chinensis HOM05D004372 ORTHO05D004331 5.9e-17 90.5 62 67.7
FvH4_6g13440 Fragaria vesca HOM05D004372 ORTHO05D004331 1.7e-16 89.0 62 64.5
FAN14G0518 Fragaria x ananassa HOM05D004372 ORTHO05D004331 1.7e-16 89.0 62 64.5
Hma1.2p1_0936F.1_g238880 Hydrangea macrophylla HOM05D004372 ORTHO05D004331 2.2e-16 88.6 59 62.7
FAN05G2794 Fragaria x ananassa HOM05D004372 ORTHO05D004331 5.0e-16 87.4 62 66.1
ClCG10G021220 Citrullus lanatus HOM05D004372 ORTHO05D004331 4.2e-15 84.3 62 61.3
Haze_20817 Corylus avellana HOM05D004372 ORTHO05D004331 1.2e-14 82.8 66 59.1
MELO3C003142.2 Cucumis melo HOM05D004372 ORTHO05D004331 2.1e-14 82.0 77 53.2
Nn2g13398 Nelumbo nucifera HOM05D004372 ORTHO05D004331 2.1e-14 82.0 61 59.0
A10p33400 Brassica napus HOM05D004372 ORTHO05D004331 2.7e-14 81.6 67 55.2
C09p74310 Brassica napus HOM05D004372 ORTHO05D004331 2.7e-14 81.6 67 55.2
BolC9t60164H Brassica oleracea HOM05D004372 ORTHO05D004331 2.7e-14 81.6 67 55.2
Gorai.012G104900 Gossypium raimondii HOM05D004372 ORTHO05D004331 2.7e-14 81.6 61 62.3
THA.LOC109116790 Tarenaya hassleriana HOM05D004372 ORTHO05D004331 2.7e-14 81.6 75 54.7
Cpa.g.c34680 Carica papaya HOM05D004372 ORTHO05D004331 4.7e-14 80.9 66 60.6
TAR633G2336 Trochodendron aralioides HOM05D004372 ORTHO05D004331 4.7e-14 80.9 64 57.8
TAR636G3128 Trochodendron aralioides HOM05D004372 ORTHO05D004331 4.7e-14 80.9 64 57.8
Cfa017356 Carpinus fangiana HOM05D004372 ORTHO05D004331 1.8e-13 79.0 66 57.6
CsaV3_4G025140 Cucumis sativus L. HOM05D004372 ORTHO05D004331 1.8e-13 79.0 65 55.4
Nn2g11160 Nelumbo nucifera HOM05D004372 ORTHO05D004331 1.8e-13 79.0 73 50.7
CsaV3_3G034820 Cucumis sativus L. HOM05D004372 ORTHO05D004331 2.3e-13 78.6 62 61.3
Gohir.D04G122000 Gossypium hirsutum HOM05D004372 ORTHO05D004331 2.3e-13 78.6 61 60.7
Hma1.2p1_1889F.1_g306650 Hydrangea macrophylla HOM05D004372 ORTHO05D004331 5.2e-13 77.4 66 57.6
Hma1.2p1_2197F.1_g316913 Hydrangea macrophylla HOM05D004372 ORTHO05D004331 5.2e-13 77.4 66 57.6
Gohir.A04G083300 Gossypium hirsutum HOM05D004372 ORTHO05D004331 6.8e-13 77.0 61 60.7
Gohir.A09G154800 Gossypium hirsutum HOM05D004372 ORTHO05D004331 6.8e-13 77.0 58 60.3
Gohir.D09G150300 Gossypium hirsutum HOM05D004372 ORTHO05D004331 1.2e-12 76.3 58 60.3
Gorai.006G171600 Gossypium raimondii HOM05D004372 ORTHO05D004331 1.2e-12 76.3 58 60.3
Carub.0006s0106 Capsella rubella HOM05D004372 ORTHO05D004331 2.0e-12 75.5 75 52.0
BolC2t06039H Brassica oleracea HOM05D004372 ORTHO05D004331 2.6e-12 75.1 63 52.4
BraA02t04711Z Brassica rapa HOM05D004372 ORTHO05D004331 2.6e-12 75.1 63 54.0
COL.COLO4_14778 Corchorus olitorius HOM05D004372 ORTHO05D004331 2.6e-12 75.1 67 58.2
BcaNung06028 Brassica carinata HOM05D004372 ORTHO05D004331 3.4e-12 74.7 63 52.4
C02p00390 Brassica napus HOM05D004372 ORTHO05D004331 3.4e-12 74.7 63 52.4
Cpa.g.sc81.114 Carica papaya HOM05D004372 ORTHO05D004331 4.4e-12 74.3 67 58.2
Duzib150G1613 Durio zibethinus HOM05D004372 ORTHO05D004331 5.7e-12 73.9 65 55.4
Haze_17088 Corylus avellana HOM05D004372 ORTHO05D004331 7.5e-12 73.6 61 50.8
Eucgr.J01238 Eucalyptus grandis HOM05D004372 ORTHO05D004331 7.5e-12 73.6 65 49.2
QL01p030934 Quercus lobata HOM05D004372 ORTHO05D004331 7.5e-12 73.6 59 57.6
TAR623G0224 Trochodendron aralioides HOM05D004372 ORTHO05D004331 9.7e-12 73.2 50 66.0
HPP92_019243 Vanilla planifolia HOM05D004372 ORTHO05D004331 9.7e-12 73.2 62 53.2
Manes.07G117700 Manihot esculenta HOM05D004372 ORTHO05D004331 1.3e-11 72.8 66 53.0
Rhsim04G0158600 Rhododendron simsii HOM05D004372 ORTHO05D004331 1.7e-11 72.4 50 62.0
Thecc.05G037100 Theobroma cacao HOM05D004372 ORTHO05D004331 1.7e-11 72.4 61 60.7
CiPaw.01G289300 Carya illinoinensis HOM05D004372 ORTHO05D004331 3.7e-11 71.2 77 48.1
MBI05_g29695_MAGBIO Magnolia biondii HOM05D000093 ORTHO05D000814 3.7e-11 71.2 69 49.3
Manes.09G092400 Manihot esculenta HOM05D004372 ORTHO05D004331 3.7e-11 71.2 55 58.2
Sed0010480 Sechium edule HOM05D004372 ORTHO05D004331 3.7e-11 71.2 66 53.0
Thecc.09G318100 Theobroma cacao HOM05D004372 ORTHO05D004331 3.7e-11 71.2 65 58.5
BraA10t45371Z Brassica rapa HOM05D004372 ORTHO05D004331 4.8e-11 70.9 67 52.2
QL07p048809 Quercus lobata HOM05D004372 ORTHO05D004331 6.3e-11 70.5 58 56.9
MELO3C009251.2 Cucumis melo HOM05D004372 ORTHO05D004331 8.3e-11 70.1 76 50.0
Cfa001453 Carpinus fangiana HOM05D004372 ORTHO05D004331 1.1e-10 69.7 60 48.3
Sp6g40230 Schrenkiella parvula HOM05D004372 ORTHO05D004331 1.1e-10 69.7 75 50.7
Atru.chr12.419 Acer truncatum HOM05D004372 ORTHO05D004331 1.4e-10 69.3 55 50.9
Manes.02G130300 Manihot esculenta HOM05D004372 ORTHO05D004331 1.4e-10 69.3 60 60.0
Duzib106G0317 Durio zibethinus HOM05D004372 ORTHO05D004331 2.4e-10 68.6 61 57.4
Thhalv10015202m.g Eutrema salsugineum HOM05D004372 ORTHO05D004331 2.4e-10 68.6 75 52.0
Zm00001eb148250 Zea mays HOM05D004372 ORTHO05D004331 2.4e-10 68.6 59 57.6
AL6G11450 Arabidopsis lyrata HOM05D004372 ORTHO05D004331 3.1e-10 68.2 75 50.7
Atru.chr8.1996 Acer truncatum HOM05D004372 ORTHO05D004331 4.1e-10 67.8 63 58.7
Oeu026714.1 Olea europaea HOM05D004372 ORTHO05D004331 4.1e-10 67.8 63 50.8
THA.LOC109117276 Tarenaya hassleriana HOM05D004372 ORTHO05D004331 4.1e-10 67.8 71 49.3
Os01g0843700 Oryza sativa ssp. japonica HOM05D004372 ORTHO05D004331 5.3e-10 67.4 60 56.7
Phvul.008G231900 Phaseolus vulgaris HOM05D004372 ORTHO05D004331 5.3e-10 67.4 63 55.6
MBI14_g04662_MAGBIO Magnolia biondii HOM05D004372 ORTHO05D004331 7.0e-10 67.0 55 47.3
Sp1g06230 Schrenkiella parvula HOM05D004372 ORTHO05D004331 7.0e-10 67.0 64 57.8
AL1G17680 Arabidopsis lyrata HOM05D004372 ORTHO05D004331 1.6e-09 65.9 84 45.2
AT5G02220 Arabidopsis thaliana HOM05D004372 ORTHO05D004331 1.6e-09 65.9 75 49.3
CDE02G0964 Ceratophyllum demersum HOM05D000511 ORTHO05D000413 1.6e-09 65.9 63 54.0
MELO3C023871.2 Cucumis melo HOM05D004372 ORTHO05D004331 1.6e-09 65.9 62 48.4
ClCG07G003460 Citrullus lanatus HOM05D004372 ORTHO05D004331 2.0e-09 65.5 61 49.2
Glyma.02G248800 Glycine max HOM05D004372 ORTHO05D004331 2.0e-09 65.5 58 56.9
Sed0017148 Sechium edule HOM05D004372 ORTHO05D004331 2.0e-09 65.5 60 48.3
Actinidia05322 Actinidia chinensis HOM05D004372 ORTHO05D004331 3.5e-09 64.7 62 54.8
COL.COLO4_18555 Corchorus olitorius HOM05D004372 ORTHO05D004331 3.5e-09 64.7 65 52.3
Gohir.A05G094000 Gossypium hirsutum HOM05D004372 ORTHO05D004331 3.5e-09 64.7 74 50.0
Peaxi162Scf00165g00075 Petunia axillaris HOM05D019299 ORTHO05D025949 3.5e-09 64.7 51 56.9
BcaB02g06736 Brassica carinata HOM05D004372 ORTHO05D004331 4.5e-09 64.3 64 54.7
Prupe.6G072300 Prunus persica HOM05D004372 ORTHO05D004331 4.5e-09 64.3 62 51.6
Carub.0001s0682 Capsella rubella HOM05D004372 ORTHO05D004331 5.9e-09 63.9 69 47.8
Lsat_1_v5_gn_8_15240 Lactuca sativa HOM05D004372 ORTHO05D004331 5.9e-09 63.9 53 52.8
MD11G1097200 Malus domestica HOM05D004372 ORTHO05D004331 5.9e-09 63.9 61 52.5
Potri.016G100000 Populus trichocarpa HOM05D004372 ORTHO05D004331 7.7e-09 63.5 52 57.7
VMungo1383G0344 Vigna mungo HOM05D017754 ORTHO05D004331 1.0e-08 63.2 66 51.5
CARHR211160 Cardamine hirsuta HOM05D004372 ORTHO05D004331 1.3e-08 62.8 75 48.0
SEGI_13071 Sequoiadendron giganteum HOM05D002383 ORTHO05D002515 1.3e-08 62.8 55 50.9
AL8G23740 Arabidopsis lyrata HOM05D004372 ORTHO05D004331 1.7e-08 62.4 64 51.6
HanXRQChr08g0220931 Helianthus annuus HOM05D004372 ORTHO05D004331 1.7e-08 62.4 61 49.2
CsaV3_5G008200 Cucumis sativus L. HOM05D004372 ORTHO05D004331 2.2e-08 62.0 60 46.7
A10p06030 Brassica napus HOM05D004372 ORTHO05D004331 2.9e-08 61.6 64 46.9
BraA10t42865Z Brassica rapa HOM05D004372 ORTHO05D004331 2.9e-08 61.6 64 46.9
Medtr5g080040 Medicago truncatula HOM05D004372 ORTHO05D004331 2.9e-08 61.6 58 51.7
C05p05520 Brassica napus HOM05D004372 ORTHO05D004331 5.0e-08 60.8 64 46.9
BolC5t29323H Brassica oleracea HOM05D004372 ORTHO05D004331 5.0e-08 60.8 64 46.9
Cc01_g13170 Coffea canephora HOM05D004372 ORTHO05D004331 5.0e-08 60.8 66 50.0
Hma1.2p1_1785F.1_g302220 Hydrangea macrophylla HOM05D004372 ORTHO05D004331 5.0e-08 60.8 60 46.7
CiPaw.09G194900 Carya illinoinensis HOM05D004372 ORTHO05D004331 6.5e-08 60.5 64 51.6
Glyma.14G067700 Glycine max HOM05D004372 ORTHO05D004331 8.5e-08 60.1 58 56.9
Phvul.008G119300 Phaseolus vulgaris HOM05D017754 ORTHO05D004331 8.5e-08 60.1 66 50.0
PGR004G0648 Punica granatum HOM05D004372 ORTHO05D004331 8.5e-08 60.1 72 51.4
Lalb_Chr14g0375161 Lupinus albus HOM05D004372 ORTHO05D004331 1.1e-07 59.7 56 57.1
Aa31LG1G22520 Aethionema arabicum HOM05D004372 ORTHO05D004331 1.5e-07 59.3 55 49.1
MD03G1088000 Malus domestica HOM05D004372 ORTHO05D004331 1.5e-07 59.3 55 52.7
Manes.10G028900 Manihot esculenta HOM05D004372 ORTHO05D004331 1.5e-07 59.3 64 46.9
Sc01g0004440 Simmondsia chinensis HOM05D004372 ORTHO05D004331 1.5e-07 59.3 47 53.2
BcaC05g24693 Brassica carinata HOM05D004372 ORTHO05D004331 2.5e-07 58.5 64 45.3
Eucgr.K03114 Eucalyptus grandis HOM05D004372 ORTHO05D004331 2.5e-07 58.5 67 47.8
THA.LOC109117261 Tarenaya hassleriana HOM05D004372 ORTHO05D004331 2.5e-07 58.5 65 43.1
A08p35620 Brassica napus HOM05D004372 ORTHO05D004331 3.2e-07 58.2 59 50.8
BraA08t35468Z Brassica rapa HOM05D004372 ORTHO05D004331 3.2e-07 58.2 59 50.8
Lsat_1_v5_gn_2_118420 Lactuca sativa HOM05D004372 ORTHO05D004331 3.2e-07 58.2 61 45.9
AL3G43490 Arabidopsis lyrata HOM05D004372 ORTHO05D004331 4.2e-07 57.8 64 48.4
Gohir.D05G094500 Gossypium hirsutum HOM05D004372 ORTHO05D004331 4.2e-07 57.8 78 48.7
Gorai.009G097700 Gossypium raimondii HOM05D004372 ORTHO05D004331 4.2e-07 57.8 78 48.7
Lalb_Chr03g0042351 Lupinus albus HOM05D004372 ORTHO05D004331 4.2e-07 57.8 56 48.2
Medtr5g080060 Medicago truncatula HOM05D004372 ORTHO05D004331 4.2e-07 57.8 58 50.0
Phvul.L007143 Phaseolus vulgaris HOM05D016115 ORTHO05D004331 4.2e-07 57.8 55 56.4
Glyma.18G183451 Glycine max HOM05D017754 ORTHO05D004331 5.5e-07 57.4 66 48.5
Lsat_1_v5_gn_5_169301 Lactuca sativa HOM05D004372 ORTHO05D004331 7.2e-07 57.0 67 49.3
Os03g0822400 Oryza sativa ssp. japonica HOM05D004372 ORTHO05D004331 7.2e-07 57.0 66 50.0
Aa31LG1G6940 Aethionema arabicum HOM05D004372 ORTHO05D004331 9.4e-07 56.6 50 54.0
LjContig00141g0021725 Lotus japonicus HOM05D004372 ORTHO05D004331 1.2e-06 56.2 51 51.0
Rhsim01G0230700 Rhododendron simsii HOM05D004372 ORTHO05D004331 1.2e-06 56.2 79 45.6
ATR0559G371 Amborella trichopoda HOM05D004372 ORTHO05D004331 1.6e-06 55.8 64 45.3
C08p03110 Brassica napus HOM05D004372 ORTHO05D004331 1.6e-06 55.8 66 48.5
BolC8t47109H Brassica oleracea HOM05D004372 ORTHO05D004331 1.6e-06 55.8 66 48.5
Potri.008G057600 Populus trichocarpa HOM05D004372 ORTHO05D004331 1.6e-06 55.8 63 49.2
CiPaw.15G088800 Carya illinoinensis HOM05D004372 ORTHO05D004331 2.1e-06 55.5 66 43.9
BcaB03g13391 Brassica carinata HOM05D004372 ORTHO05D004331 2.7e-06 55.1 50 50.0
Potri.010G201900 Populus trichocarpa HOM05D004372 ORTHO05D004331 2.7e-06 55.1 63 47.6
CiPaw.13G091200 Carya illinoinensis HOM05D004372 ORTHO05D004331 3.6e-06 54.7 66 43.9
Potri.009G034001 Populus trichocarpa HOM05D004372 ORTHO05D004331 3.6e-06 54.7 61 50.8
Glyma.07G133800 Glycine max HOM05D017754 ORTHO05D004331 4.7e-06 54.3 66 47.0
COL.COLO4_15084 Corchorus olitorius HOM05D022458 ORTHO05D025182 6.1e-06 53.9 77 42.9
Nitab4.5_0001326g0030 Nicotiana tabacum HOM05D004372 ORTHO05D004331 6.1e-06 53.9 69 42.0
Solyc05g053050.1 Solanum lycopersicum HOM05D004372 ORTHO05D004331 6.1e-06 53.9 67 44.8


User provided reference genes

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