Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT11G1997 Cannabis sativa HOM05D001920 ORTHO05D005408 0.0e+00 1118.2 571 100.0
Prupe.1G408800 Prunus persica HOM05D001920 ORTHO05D005408 4.9e-273 944.1 519 90.9
Ciclev10007867m.g Citrus clementina HOM05D001920 ORTHO05D005408 1.1e-272 943.0 559 86.2
Atru.chr7.1932 Acer truncatum HOM05D001920 ORTHO05D005408 3.2e-272 941.4 569 85.1
Haze_18151 Corylus avellana HOM05D001920 ORTHO05D005408 7.1e-272 940.3 600 81.5
CsaV3_4G035800 Cucumis sativus L. HOM05D001920 ORTHO05D005408 2.1e-271 938.7 566 83.9
Duzib187G1306 Durio zibethinus HOM05D001920 ORTHO05D005408 3.5e-271 937.9 566 85.3
MD08G1065800 Malus domestica HOM05D001920 ORTHO05D005408 1.3e-270 936.0 574 83.6
CiPaw.15G036600 Carya illinoinensis HOM05D001920 ORTHO05D005408 2.3e-270 935.3 573 83.4
Gohir.A08G247700 Gossypium hirsutum HOM05D001920 ORTHO05D005408 2.3e-270 935.3 568 84.2
MD15G1055600 Malus domestica HOM05D001920 ORTHO05D005408 2.3e-270 935.3 579 83.1
Cfa017979 Carpinus fangiana HOM05D001920 ORTHO05D005408 3.9e-270 934.5 572 83.4
Gohir.D08G268800 Gossypium hirsutum HOM05D001920 ORTHO05D005408 3.9e-270 934.5 565 84.4
Gorai.004G286500 Gossypium raimondii HOM05D001920 ORTHO05D005408 6.7e-270 933.7 565 84.2
COL.COLO4_21094 Corchorus olitorius HOM05D001920 ORTHO05D005408 1.5e-269 932.6 571 83.9
Dinv12437 Davidia involucrata HOM05D001920 ORTHO05D005408 1.6e-268 929.1 539 86.8
Potri.006G225500 Populus trichocarpa HOM05D001920 ORTHO05D005408 6.2e-268 927.2 567 84.8
Manes.16G082600 Manihot esculenta HOM05D001920 ORTHO05D005408 4.0e-267 924.5 569 83.7
Thecc.09G057700 Theobroma cacao HOM05D001920 ORTHO05D005408 4.0e-267 924.5 566 83.9
RcHm_v2.0_Chr6g0311281 Rosa chinensis HOM05D001920 ORTHO05D005408 9.0e-267 923.3 590 81.0
PGR044G1731 Punica granatum HOM05D001920 ORTHO05D005408 1.2e-266 922.9 573 82.2
CSS0047067 Camellia sinensis var. sinensis HOM05D001920 ORTHO05D005408 2.0e-266 922.2 568 82.4
ClCG05G018020 Citrullus lanatus HOM05D001920 ORTHO05D005408 4.5e-266 921.0 566 83.6
Sabra06G0174400 Salix brachista HOM05D001920 ORTHO05D005408 1.3e-265 919.5 566 83.6
GSVIVG01035413001 Vitis vinifera HOM05D001920 ORTHO05D005408 4.9e-265 917.5 524 87.4
Lalb_Chr22g0356171 Lupinus albus HOM05D001920 ORTHO05D005408 4.2e-264 914.4 566 82.7
FAN27G2437 Fragaria x ananassa HOM05D001920 ORTHO05D005408 7.1e-264 913.7 561 82.5
vmacro07770 Vaccinium macrocarpon HOM05D001920 ORTHO05D005408 1.8e-262 909.1 572 80.6
Phvul.003G267800 Phaseolus vulgaris HOM05D001920 ORTHO05D005408 2.3e-262 908.7 520 87.3
Peaxi162Scf00694g00218 Petunia axillaris HOM05D001920 ORTHO05D005408 3.9e-262 907.9 564 81.9
Nitab4.5_0004053g0020 Nicotiana tabacum HOM05D001920 ORTHO05D005408 8.7e-262 906.7 571 81.6
VMungo0251G2102 Vigna mungo HOM05D001920 ORTHO05D005408 8.7e-262 906.7 520 87.5
Ca_03647_v3 Cicer arietinum L. HOM05D001920 ORTHO05D005408 1.5e-261 906.0 570 81.8
Sp6g31610 Schrenkiella parvula HOM05D001920 ORTHO05D005408 1.5e-261 906.0 541 84.1
Glyma.16G120600 Glycine max HOM05D001920 ORTHO05D005408 1.9e-261 905.6 517 87.6
Carub.0006s1052 Capsella rubella HOM05D001920 ORTHO05D005408 3.3e-261 904.8 554 83.4
SalBow4G2367 Salvia bowleyana HOM05D001920 ORTHO05D005408 3.3e-261 904.8 569 81.5
arahy.Tifrunner.gnm1.ann1.9L6JUF Arachis hypogaea HOM05D001920 ORTHO05D005408 5.6e-261 904.0 525 86.7
Medtr8g074590 Medicago truncatula HOM05D001920 ORTHO05D005408 5.6e-261 904.0 549 84.0
THA.LOC104799157 Tarenaya hassleriana HOM05D001920 ORTHO05D005408 5.6e-261 904.0 538 84.8
PGSC0003DMG400006851 Solanum tuberosum HOM05D001920 ORTHO05D005408 7.4e-261 903.7 539 83.9
CAN.G219.68 Capsicum annuum HOM05D001920 ORTHO05D005408 9.6e-261 903.3 530 84.9
FvH4_2g31510 Fragaria vesca HOM05D001920 ORTHO05D005408 9.6e-261 903.3 566 81.8
TWI63G1659 Tripterygium wilfordii HOM05D001920 ORTHO05D005408 9.6e-261 903.3 569 81.5
HanXRQChr10g0309741 Helianthus annuus HOM05D001920 ORTHO05D005408 1.3e-260 902.9 561 81.3
FAN20G0594 Fragaria x ananassa HOM05D001920 ORTHO05D005408 1.6e-260 902.5 557 82.4
Cc08_g10930 Coffea canephora HOM05D001920 ORTHO05D005408 2.1e-260 902.1 546 83.7
A02p01310 Brassica napus HOM05D001920 ORTHO05D005408 3.7e-260 901.4 549 83.4
BraA02t05109Z Brassica rapa HOM05D001920 ORTHO05D005408 3.7e-260 901.4 549 83.4
AL6G22770 Arabidopsis lyrata HOM05D001920 ORTHO05D005408 4.8e-260 901.0 555 83.1
BcaC03g13404 Brassica carinata HOM05D001920 ORTHO05D005408 4.8e-260 901.0 549 83.4
C02p05530 Brassica napus HOM05D001920 ORTHO05D005408 4.8e-260 901.0 549 83.4
BolC2t06498H Brassica oleracea HOM05D001920 ORTHO05D005408 4.8e-260 901.0 549 83.4
RhsimUnG0209800 Rhododendron simsii HOM05D001920 ORTHO05D005408 4.8e-260 901.0 568 80.8
HanXRQChr12g0359101 Helianthus annuus HOM05D001920 ORTHO05D005408 8.2e-260 900.2 563 80.8
Psat4g103240 Pisum sativum HOM05D001920 ORTHO05D005408 1.1e-259 899.8 573 81.5
QL02p000680 Quercus lobata HOM05D001920 ORTHO05D005408 2.4e-259 898.7 579 80.3
Solyc01g087650.4 Solanum lycopersicum HOM05D001920 ORTHO05D005408 3.1e-259 898.3 538 83.5
BolC3t13123H Brassica oleracea HOM05D001920 ORTHO05D005408 4.0e-259 897.9 525 85.3
arahy.Tifrunner.gnm1.ann1.14SSX1 Arachis hypogaea HOM05D001920 ORTHO05D005408 6.9e-259 897.1 537 84.7
TWI34G1596 Tripterygium wilfordii HOM05D001920 ORTHO05D005408 6.9e-259 897.1 528 85.4
CARHR201150 Cardamine hirsuta HOM05D001920 ORTHO05D005408 9.0e-259 896.7 549 83.1
Hund19436 Selenicereus undatus HOM05D001920 ORTHO05D005408 9.0e-259 896.7 545 81.5
Thhalv10013117m.g Eutrema salsugineum HOM05D001920 ORTHO05D005408 1.2e-258 896.3 549 83.2
C03p06150 Brassica napus HOM05D001920 ORTHO05D005408 1.5e-258 896.0 525 85.3
Lj4g0027878 Lotus japonicus HOM05D001920 ORTHO05D005408 2.0e-258 895.6 523 86.0
Actinidia29326 Actinidia chinensis HOM05D001920 ORTHO05D005408 2.6e-258 895.2 576 79.3
FAN15G2558 Fragaria x ananassa HOM05D001920 ORTHO05D005408 3.4e-258 894.8 576 80.2
TAR626G1364 Trochodendron aralioides HOM05D001920 ORTHO05D005408 3.4e-258 894.8 558 81.0
arahy.Tifrunner.gnm1.ann1.UJN8CA Arachis hypogaea HOM05D001920 ORTHO05D005408 4.5e-258 894.4 583 80.3
Lsat_1_v5_gn_4_73880 Lactuca sativa HOM05D001920 ORTHO05D005408 1.3e-257 892.9 582 79.2
Migut.D00410 Erythranthe guttata HOM05D001920 ORTHO05D005408 1.7e-257 892.5 573 79.6
Sopen01g034610 Solanum pennellii HOM05D001920 ORTHO05D005408 1.7e-257 892.5 541 82.6
FAN24G1332 Fragaria x ananassa HOM05D001920 ORTHO05D005408 2.2e-257 892.1 576 80.2
Lj7A258G43 Lonicera japonica HOM05D001920 ORTHO05D005408 4.9e-257 891.0 561 82.0
Glyma.02G043400 Glycine max HOM05D001920 ORTHO05D005408 6.5e-257 890.6 555 82.5
arahy.Tifrunner.gnm1.ann1.RZJX0Q Arachis hypogaea HOM05D001920 ORTHO05D005408 5.5e-256 887.5 525 85.3
EL10Ac8g19267 Beta vulgaris HOM05D001920 ORTHO05D005408 2.1e-255 885.6 551 80.2
Aa31LG3G15240 Aethionema arabicum HOM05D001920 ORTHO05D005408 1.0e-254 883.2 534 83.0
MSTRG.14078 Avicennia marina HOM05D001920 ORTHO05D005408 1.9e-253 879.0 530 83.0
Ah.09g228460 Amaranthus hybridus HOM05D001920 ORTHO05D005408 2.5e-253 878.6 567 78.3
Sc23g0005750 Simmondsia chinensis HOM05D001920 ORTHO05D005408 9.7e-253 876.7 567 79.4
MELO3C016885.2 Cucumis melo HOM05D001920 ORTHO05D005408 9.0e-251 870.2 566 79.9
BraA03t09873Z Brassica rapa HOM05D001920 ORTHO05D005408 1.3e-249 866.3 578 77.2
RhsimUnG0018300 Rhododendron simsii HOM05D001920 ORTHO05D005408 2.2e-249 865.5 568 78.5
A03p05350 Brassica napus HOM05D001920 ORTHO05D005408 3.8e-249 864.8 539 80.9
Aqoxy6G00323 Aquilegia oxysepala HOM05D001920 ORTHO05D005408 6.5e-249 864.0 537 80.3
Migut.E01586 Erythranthe guttata HOM05D001920 ORTHO05D005408 8.5e-249 863.6 526 82.7
DCAR_003139 Daucus carota HOM05D001920 ORTHO05D005408 4.2e-248 861.3 561 78.1
AUR62031243 Chenopodium quinoa HOM05D001920 ORTHO05D005408 1.6e-247 859.4 566 77.6
BcaB01g05437 Brassica carinata HOM05D001920 ORTHO05D005408 6.7e-246 854.0 512 82.8
PSO210G2773 Papaver somniferum HOM05D001920 ORTHO05D005408 6.7e-246 854.0 574 76.1
CDE05G1481 Ceratophyllum demersum HOM05D001920 ORTHO05D005408 2.5e-245 852.0 533 79.0
PSO210G7360 Papaver somniferum HOM05D001920 ORTHO05D005408 4.3e-245 851.3 549 78.1
AUR62027456 Chenopodium quinoa HOM05D001920 ORTHO05D005408 6.3e-244 847.4 556 77.9
BcaNung02634 Brassica carinata HOM05D001920 ORTHO05D005408 4.1e-243 844.7 553 79.6
ECA234G0290 Erigeron canadensis HOM05D001920 ORTHO05D005408 1.7e-241 839.3 560 77.3
AT5G11980 Arabidopsis thaliana HOM05D001920 ORTHO05D005408 2.3e-238 828.9 460 89.8
Nn8g38775 Nelumbo nucifera HOM05D001920 ORTHO05D005408 1.7e-236 822.8 466 86.7
ATR0686G037 Amborella trichopoda HOM05D001920 ORTHO05D005408 2.6e-234 815.5 566 73.7
unitig_8.g5056 Utricularia gibba HOM05D001920 ORTHO05D005408 2.9e-233 812.0 557 74.3
Actinidia03557 Actinidia chinensis HOM05D001920 ORTHO05D005408 3.3e-229 798.5 489 81.6
HPP92_005529 Vanilla planifolia HOM05D001920 ORTHO05D005408 4.5e-226 788.1 564 71.5
Eucgr.C03063 Eucalyptus grandis HOM05D001920 ORTHO05D005408 7.7e-226 787.3 519 78.0
Cpa.g.sc222.19 Carica papaya HOM05D001920 ORTHO05D005408 1.7e-225 786.2 557 74.3
Hma1.2p1_0077F.1_g039730 Hydrangea macrophylla HOM05D001920 ORTHO05D005408 8.0e-223 777.3 490 81.6
Os12g0538300 Oryza sativa ssp. japonica HOM05D001920 ORTHO05D005408 1.5e-221 773.1 504 75.0
Zm00001eb006920 Zea mays HOM05D001920 ORTHO05D005408 4.4e-221 771.5 508 74.0
Zm00001eb401360 Zea mays HOM05D001920 ORTHO05D005408 2.4e-219 765.8 493 75.1
Sed0005137 Sechium edule HOM05D001920 ORTHO05D005408 7.5e-213 744.2 447 83.0
Sed0005880 Sechium edule HOM05D001920 ORTHO05D005408 9.8e-213 743.8 444 82.9
TPR.G14979 Trifolium pratense HOM05D001920 ORTHO05D005408 2.3e-209 732.6 424 87.3
Hma1.2p1_0196F.1_g084800 Hydrangea macrophylla HOM05D001920 ORTHO05D005408 6.8e-206 721.1 530 72.3
MBI18_g38862_MAGBIO Magnolia biondii HOM05D001920 ORTHO05D005408 3.5e-202 708.8 570 66.0
Nitab4.5_0000707g0110 Nicotiana tabacum HOM05D001920 ORTHO05D005408 2.1e-199 699.5 575 67.1
Mapoly0087s0038 Marchantia polymorpha HOM05D001920 ORTHO05D005408 8.9e-198 694.1 563 64.8
Pp3c10_11790 Physcomitrium patens HOM05D001920 ORTHO05D005408 1.5e-192 676.8 497 67.2
SHI18715 Sapria himalayana HOM05D001920 ORTHO05D005408 1.4e-190 670.2 461 72.7
SGA_v2.0_scaffold169G38703 Striga asiatica HOM05D001920 ORTHO05D005408 5.2e-190 668.3 569 64.3
SMO356G0672 Selaginella moellendorffii HOM05D001920 ORTHO05D005408 8.1e-183 644.4 490 66.1
CBR_g34170 Chara braunii HOM05D001920 ORTHO05D005408 1.4e-182 643.7 545 59.3
Oeu003998.1 Olea europaea HOM05D001920 ORTHO05D005408 6.8e-182 641.3 566 63.4
Lj7C259T3 Lonicera japonica HOM05D001920 ORTHO05D005408 1.8e-166 590.1 318 90.6
RcHm_v2.0_Chr4g0442191 Rosa chinensis HOM05D001920 ORTHO05D005408 2.2e-164 583.2 527 59.8
MBI05_g36626_MAGBIO Magnolia biondii HOM05D001920 ORTHO05D005408 4.9e-164 582.0 540 58.7
Lj7C264G4 Lonicera japonica HOM05D001920 ORTHO05D005408 4.8e-159 565.5 503 60.6
SGA_v2.0_scaffold163G38013 Striga asiatica HOM05D001920 ORTHO05D005408 4.0e-158 562.4 350 83.7
FAN07G1923 Fragaria x ananassa HOM05D001920 ORTHO05D005408 1.2e-157 560.8 494 60.7
FvH4_4g33140 Fragaria vesca HOM05D001920 ORTHO05D005408 4.5e-157 558.9 495 60.6
FAN12G3829 Fragaria x ananassa HOM05D001920 ORTHO05D005408 7.6e-157 558.1 495 60.6
Pp3c2_14420 Physcomitrium patens HOM05D001920 ORTHO05D005408 1.6e-154 550.4 457 62.8
AagrBONN_evm.TU.Sc2ySwM_228.4615 Anthoceros agrestis HOM05D001920 ORTHO05D005408 3.9e-137 492.7 331 72.8
FAN22G0219 Fragaria x ananassa HOM05D001920 ORTHO05D005408 1.4e-131 474.2 492 53.7
PRCOL_00001520 Prasinoderma coloniale HOM05D001920 ORTHO05D005408 6.1e-122 442.2 500 46.6
Oeu004630.1 Olea europaea HOM05D001920 ORTHO05D005408 1.2e-117 427.9 605 47.1
Cre10.g439650 Chlamydomonas reinhardtii HOM05D001920 ORTHO05D005408 2.6e-104 383.6 531 39.9
FAN17G1736 Fragaria x ananassa HOM05D001920 ORTHO05D005408 5.2e-97 359.4 428 49.8
FAN12G2252 Fragaria x ananassa HOM05D001920 ORTHO05D005408 3.6e-90 336.7 346 56.1
MCO04G241 Micromonas commoda HOM05D001920 ORTHO05D005408 6.4e-87 325.9 449 39.9
Migut.A00111 Erythranthe guttata HOM05D001920 ORTHO05D005408 2.2e-71 274.2 162 87.0
CDE05G0360 Ceratophyllum demersum HOM05D001920 ORTHO05D005408 2.4e-70 270.8 186 69.9
Gorai.009G043000 Gossypium raimondii HOM05D001920 ORTHO05D005408 4.6e-69 266.5 561 38.1
CDE05G1717 Ceratophyllum demersum HOM05D001920 ORTHO05D005408 4.6e-61 240.0 303 46.5
MBI13_g05979_MAGBIO Magnolia biondii HOM05D001920 ORTHO05D005408 5.4e-54 216.5 413 37.0
Gohir.D05G042133 Gossypium hirsutum HOM05D001920 ORTHO05D005408 1.4e-49 201.8 506 34.2
SEGI_36171 Sequoiadendron giganteum HOM05D001920 ORTHO05D000001 3.4e-48 197.2 139 71.2
arahy.Tifrunner.gnm1.ann1.NPWH83 Arachis hypogaea HOM05D001920 ORTHO05D005408 6.6e-44 183.0 105 82.9
Lj7A264G15 Lonicera japonica HOM05D001920 ORTHO05D005408 4.5e-40 170.2 111 82.0
MSTRG.25967 Avicennia marina HOM05D001920 ORTHO05D005408 2.4e-38 164.5 106 80.2
Eucgr.L03492 Eucalyptus grandis HOM05D001920 ORTHO05D005408 6.7e-36 156.4 139 60.4
BcaNung02635 Brassica carinata HOM05D001920 ORTHO05D005408 6.9e-33 146.4 83 84.3
Hma1.2p1_0196F.1_g084820 Hydrangea macrophylla HOM05D001920 ORTHO05D005408 6.5e-31 139.8 92 81.5
TPR.G36194 Trifolium pratense HOM05D001920 ORTHO05D005408 5.5e-30 136.7 77 92.2
TPR.G748 Trifolium pratense HOM05D001920 ORTHO05D005408 7.6e-24 116.3 65 89.2
Zm00001eb014540 Zea mays HOM05D000282 ORTHO05D000272 4.2e-22 110.5 76 72.4
BcaC05g26027 Brassica carinata HOM05D001920 ORTHO05D024365 5.1e-20 103.6 71 76.1
TPR.G14973 Trifolium pratense HOM05D001920 ORTHO05D005408 3.7e-18 97.4 87 50.6
TPR.G36118 Trifolium pratense HOM05D001920 ORTHO05D005408 4.8e-18 97.1 54 92.6
MBI17_g36954_MAGBIO Magnolia biondii HOM05D001920 ORTHO05D012920 4.1e-17 94.0 68 72.1
SGA_v2.0_scaffold26G11215 Striga asiatica HOM05D001920 ORTHO05D024365 1.7e-15 88.6 108 54.6
C06p01410 Brassica napus HOM05D001920 ORTHO05D024365 7.9e-13 79.7 77 55.8
C05p19930 Brassica napus HOM05D001920 ORTHO05D024365 1.4e-12 79.0 53 73.6
ECA232G0588 Erigeron canadensis HOM05D000006 ORTHO05D000001 3.0e-12 77.8 49 79.6
BolC5t30691H Brassica oleracea HOM05D001920 ORTHO05D024365 1.7e-10 72.0 43 81.4
Lsat_1_v5_gn_6_51140 Lactuca sativa HOM05D001920 ORTHO05D233273 2.6e-08 64.7 52 59.6
ATR0009G024 Amborella trichopoda HOM05D001920 ORTHO05D005408 1.7e-07 62.0 65 49.2
Lsat_1_v5_gn_1_94900 Lactuca sativa HOM05D001920 ORTHO05D231497 3.8e-07 60.8 50 58.0
Lj7A259T19 Lonicera japonica HOM05D001920 ORTHO05D235283 3.8e-07 60.8 132 38.6
ATR0009G028 Amborella trichopoda HOM05D001920 ORTHO05D005408 3.2e-06 57.8 44 54.5
Cfa024452 Carpinus fangiana HOM05D001920 ORTHO05D123033 7.2e-06 56.6 199 26.1


User provided reference genes

Program Settings