Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT11G1915 Cannabis sativa HOM05D003822 ORTHO05D004484 3.6e-124 448.7 316 100.0
CANSAT56G4141 Cannabis sativa HOM05D003822 ORTHO05D004484 1.4e-104 383.6 321 88.5
Cfa015215 Carpinus fangiana HOM05D003822 ORTHO05D004484 2.4e-80 303.1 316 74.1
Glyma.15G027800 Glycine max HOM05D003822 ORTHO05D004484 1.2e-79 300.8 308 68.2
Prupe.1G200400 Prunus persica HOM05D003822 ORTHO05D004484 6.0e-79 298.5 316 67.7
Sed0021377 Sechium edule HOM05D003822 ORTHO05D004484 7.8e-79 298.1 311 69.8
Glyma.13G346400 Glycine max HOM05D003822 ORTHO05D004484 3.0e-78 296.2 311 66.9
VMungo1080G0920 Vigna mungo HOM05D003822 ORTHO05D004484 6.6e-78 295.0 305 65.9
QL10p052081 Quercus lobata HOM05D003822 ORTHO05D004484 2.5e-77 293.1 309 69.6
Ciclev10021425m.g Citrus clementina HOM05D003822 ORTHO05D004484 4.3e-77 292.4 316 70.3
CiPaw.02G103400 Carya illinoinensis HOM05D003822 ORTHO05D004484 5.6e-77 292.0 316 70.3
MELO3C017788.2 Cucumis melo HOM05D003822 ORTHO05D004484 7.3e-77 291.6 308 68.5
Hma1.2p1_2403F.1_g321420 Hydrangea macrophylla HOM05D003822 ORTHO05D004484 7.3e-77 291.6 317 67.8
TPR.G6564 Trifolium pratense HOM05D003822 ORTHO05D004484 1.3e-76 290.8 318 61.6
FAN08G2486 Fragaria x ananassa HOM05D003822 ORTHO05D004484 1.6e-76 290.4 310 62.9
Haze_01421 Corylus avellana HOM05D003822 ORTHO05D004484 3.6e-76 289.3 308 71.4
Hma1.2p1_0635F.1_g193140 Hydrangea macrophylla HOM05D003822 ORTHO05D004484 4.8e-76 288.9 317 64.7
Eucgr.A00039 Eucalyptus grandis HOM05D003822 ORTHO05D004484 8.1e-76 288.1 325 61.2
Ca_01239_v3 Cicer arietinum L. HOM05D003822 ORTHO05D004484 5.3e-75 285.4 312 67.0
FAN18G3379 Fragaria x ananassa HOM05D003822 ORTHO05D004484 1.5e-74 283.9 326 66.6
FvH4_5g32960 Fragaria vesca HOM05D003822 ORTHO05D004484 2.6e-74 283.1 329 65.3
CiPaw.01G173700 Carya illinoinensis HOM05D003822 ORTHO05D004484 3.4e-74 282.7 316 71.5
Lalb_Chr24g0396641 Lupinus albus HOM05D003822 ORTHO05D004484 3.4e-74 282.7 319 67.4
Medtr2g099360 Medicago truncatula HOM05D003822 ORTHO05D004484 5.8e-74 282.0 325 68.3
TAR633G2284 Trochodendron aralioides HOM05D003822 ORTHO05D004484 5.8e-74 282.0 299 65.9
MD04G1046700 Malus domestica HOM05D003822 ORTHO05D004484 1.3e-73 280.8 318 67.0
CsaV3_4G002560 Cucumis sativus L. HOM05D003822 ORTHO05D004484 2.2e-73 280.0 311 75.2
FAN04G1289 Fragaria x ananassa HOM05D003822 ORTHO05D004484 8.4e-73 278.1 319 66.1
Lj3g0026330 Lotus japonicus HOM05D003822 ORTHO05D004484 1.1e-72 277.7 324 72.8
Sed0005976 Sechium edule HOM05D003822 ORTHO05D004484 1.4e-72 277.3 311 73.0
Gohir.D11G153200 Gossypium hirsutum HOM05D003822 ORTHO05D004484 1.9e-72 276.9 311 60.8
Gorai.007G162100 Gossypium raimondii HOM05D003822 ORTHO05D004484 2.4e-72 276.6 311 60.8
arahy.Tifrunner.gnm1.ann1.0NAL6S Arachis hypogaea HOM05D003822 ORTHO05D004484 4.2e-72 275.8 318 71.4
arahy.Tifrunner.gnm1.ann1.1KAH27 Arachis hypogaea HOM05D003822 ORTHO05D004484 4.2e-72 275.8 318 71.7
RcHm_v2.0_Chr7g0230961 Rosa chinensis HOM05D003822 ORTHO05D004484 5.4e-72 275.4 319 64.3
Gohir.A11G145000 Gossypium hirsutum HOM05D003822 ORTHO05D004484 7.1e-72 275.0 311 60.8
Thecc.01G205200 Theobroma cacao HOM05D003822 ORTHO05D004484 9.3e-72 274.6 317 66.6
Nn7g37555 Nelumbo nucifera HOM05D003822 ORTHO05D004484 1.6e-71 273.9 316 59.8
Duzib211G0255 Durio zibethinus HOM05D003822 ORTHO05D004484 3.5e-71 272.7 317 65.9
Glyma.11G125400 Glycine max HOM05D003822 ORTHO05D004484 3.5e-71 272.7 314 60.5
Potri.017G018400 Populus trichocarpa HOM05D003822 ORTHO05D004484 4.6e-71 272.3 316 66.8
Duzib133G0954 Durio zibethinus HOM05D003822 ORTHO05D004484 1.0e-70 271.2 317 65.6
COL.COLO4_29926 Corchorus olitorius HOM05D003822 ORTHO05D004484 1.3e-70 270.8 317 60.6
Eucgr.H00681 Eucalyptus grandis HOM05D003822 ORTHO05D004484 1.3e-70 270.8 317 67.2
Nn1g09539 Nelumbo nucifera HOM05D003822 ORTHO05D004484 1.3e-70 270.8 320 61.9
TAR362G1102 Trochodendron aralioides HOM05D003822 ORTHO05D004484 1.3e-70 270.8 309 64.4
Ciclev10016105m.g Citrus clementina HOM05D003822 ORTHO05D004484 1.8e-70 270.4 311 68.5
Peaxi162Scf00995g00322 Petunia axillaris HOM05D003822 ORTHO05D004484 6.7e-70 268.5 307 60.9
THA.LOC104819024 Tarenaya hassleriana HOM05D003822 ORTHO05D004484 2.5e-69 266.5 314 66.2
VMungo1127G1572 Vigna mungo HOM05D003822 ORTHO05D004484 3.3e-69 266.2 310 58.4
Sc19g0002790 Simmondsia chinensis HOM05D003822 ORTHO05D004484 7.4e-69 265.0 305 63.6
Manes.13G057600 Manihot esculenta HOM05D003822 ORTHO05D004484 2.1e-68 263.5 312 64.7
Sabra17G0014400 Salix brachista HOM05D000455 ORTHO05D000434 2.1e-68 263.5 308 68.2
AUR62002363 Chenopodium quinoa HOM05D003822 ORTHO05D004484 4.8e-68 262.3 303 68.0
Phvul.005G155400 Phaseolus vulgaris HOM05D003822 ORTHO05D004484 1.1e-67 261.2 304 64.8
SGA_v2.0_scaffold77G25327 Striga asiatica HOM05D003822 ORTHO05D004484 1.8e-67 260.4 318 56.3
Oeu013421.2 Olea europaea HOM05D003822 ORTHO05D004484 2.4e-67 260.0 305 64.9
RcHm_v2.0_Chr1g0340971 Rosa chinensis HOM05D003822 ORTHO05D004484 2.4e-67 260.0 307 58.3
Atru.chr6.3488 Acer truncatum HOM05D003822 ORTHO05D004484 6.9e-67 258.5 319 70.5
Solyc06g007700.4 Solanum lycopersicum HOM05D003822 ORTHO05D004484 6.9e-67 258.5 311 65.6
PGR102G0947 Punica granatum HOM05D003822 ORTHO05D004484 2.0e-66 256.9 322 57.1
Sabra07G0108500 Salix brachista HOM05D003822 ORTHO05D004484 2.0e-66 256.9 315 59.7
Sabra07G0120800 Salix brachista HOM05D003822 ORTHO05D004484 2.0e-66 256.9 315 59.7
vmacro14674 Vaccinium macrocarpon HOM05D003822 ORTHO05D004484 2.0e-66 256.9 306 59.5
Cc02_g30690 Coffea canephora HOM05D003822 ORTHO05D004484 2.6e-66 256.5 308 64.0
PSO017G3256 Papaver somniferum HOM05D003822 ORTHO05D004484 4.5e-66 255.8 313 67.1
Lalb_Chr22g0352031 Lupinus albus HOM05D003822 ORTHO05D004484 1.0e-65 254.6 315 56.8
Nitab4.5_0002641g0020 Nicotiana tabacum HOM05D003822 ORTHO05D004484 1.0e-65 254.6 315 67.0
PSO837G0022 Papaver somniferum HOM05D003822 ORTHO05D004484 1.7e-65 253.8 313 66.5
EL10Ac3g06027 Beta vulgaris HOM05D003822 ORTHO05D004484 2.2e-65 253.4 316 66.1
Aqoxy2G04159 Aquilegia oxysepala HOM05D003822 ORTHO05D004484 2.9e-65 253.1 304 62.5
Nitab4.5_0003952g0050 Nicotiana tabacum HOM05D003822 ORTHO05D004484 3.8e-65 252.7 315 63.2
Cpa.g.sc8.23 Carica papaya HOM05D003822 ORTHO05D004484 6.5e-65 251.9 332 57.2
TWI36G1391 Tripterygium wilfordii HOM05D003822 ORTHO05D004484 8.4e-65 251.5 311 60.1
TWI36G1709 Tripterygium wilfordii HOM05D003822 ORTHO05D004484 8.4e-65 251.5 311 60.1
TAR365G1107 Trochodendron aralioides HOM05D003822 ORTHO05D004484 1.1e-64 251.1 289 67.1
TWI18G0659 Tripterygium wilfordii HOM05D003822 ORTHO05D004484 1.4e-64 250.8 314 62.4
Actinidia23132 Actinidia chinensis HOM05D003822 ORTHO05D004484 1.9e-64 250.4 318 52.5
Duzib138G1354 Durio zibethinus HOM05D003822 ORTHO05D004484 1.9e-64 250.4 317 67.2
Ah.07g202460 Amaranthus hybridus HOM05D003822 ORTHO05D004484 2.5e-64 250.0 317 56.5
Dinv28779 Davidia involucrata HOM05D003822 ORTHO05D004484 7.1e-64 248.4 291 66.7
MSTRG.17947 Avicennia marina HOM05D003822 ORTHO05D004484 2.1e-63 246.9 319 56.4
Actinidia34522 Actinidia chinensis HOM05D003822 ORTHO05D004484 2.7e-63 246.5 321 63.2
Peaxi162Scf00372g00722 Petunia axillaris HOM05D003822 ORTHO05D004484 6.0e-63 245.4 296 66.9
MD00G1127600 Malus domestica HOM05D003822 ORTHO05D004484 7.9e-63 245.0 309 58.6
Potri.014G197200 Populus trichocarpa HOM05D003822 ORTHO05D004484 7.9e-63 245.0 319 71.8
ClCG07G011660 Citrullus lanatus HOM05D003822 ORTHO05D004484 1.0e-62 244.6 408 51.0
Manes.12G057507 Manihot esculenta HOM05D003822 ORTHO05D004484 1.0e-62 244.6 306 67.3
Manes.12G057905 Manihot esculenta HOM05D003822 ORTHO05D004484 1.0e-62 244.6 306 67.3
PGSC0003DMG400020658 Solanum tuberosum HOM05D003822 ORTHO05D004484 1.0e-62 244.6 314 64.3
Lj3g0024368 Lotus japonicus HOM05D003822 ORTHO05D004484 2.3e-62 243.4 301 62.5
Sopen06g002590 Solanum pennellii HOM05D003822 ORTHO05D004484 2.3e-62 243.4 311 68.2
ECA236G4570 Erigeron canadensis HOM05D003822 ORTHO05D004484 3.9e-62 242.7 316 58.2
THA.LOC104822456 Tarenaya hassleriana HOM05D003822 ORTHO05D004484 3.9e-62 242.7 311 58.8
Sabra17G0002300 Salix brachista HOM05D000455 ORTHO05D000434 5.1e-62 242.3 355 58.9
HPP92_015668 Vanilla planifolia HOM05D003822 ORTHO05D004484 6.7e-62 241.9 315 60.6
Sabra14G0133100 Salix brachista HOM05D003822 ORTHO05D004484 7.4e-61 238.4 317 57.1
BcaB03g14694 Brassica carinata HOM05D003822 ORTHO05D004484 1.6e-60 237.3 314 62.4
Carub.0003s0711 Capsella rubella HOM05D003822 ORTHO05D004484 2.1e-60 236.9 308 65.6
Hund03185 Selenicereus undatus HOM05D003822 ORTHO05D004484 4.8e-60 235.7 321 54.5
HanXRQChr01g0010521 Helianthus annuus HOM05D003822 ORTHO05D004484 6.2e-60 235.3 306 61.4
A05p40650 Brassica napus HOM05D003822 ORTHO05D004484 8.2e-60 235.0 305 59.7
BraA05t22796Z Brassica rapa HOM05D003822 ORTHO05D004484 3.1e-59 233.0 315 58.7
CAN.G181.49 Capsicum annuum HOM05D003822 ORTHO05D004484 3.1e-59 233.0 311 67.5
Manes.12G058903 Manihot esculenta HOM05D003822 ORTHO05D004484 6.9e-59 231.9 309 67.3
AL3G18900 Arabidopsis lyrata HOM05D003822 ORTHO05D004484 1.5e-58 230.7 309 61.2
Sp3g06480 Schrenkiella parvula HOM05D003822 ORTHO05D004484 5.8e-58 228.8 313 60.7
HanXRQChr10g0281191 Helianthus annuus HOM05D003822 ORTHO05D004484 7.6e-58 228.4 329 48.6
Lsat_1_v5_gn_8_98601 Lactuca sativa HOM05D003822 ORTHO05D004484 7.6e-58 228.4 318 62.6
AT3G07560 Arabidopsis thaliana HOM05D003822 ORTHO05D004484 6.5e-57 225.3 309 60.2
CDE02G4798 Ceratophyllum demersum HOM05D003822 ORTHO05D004484 6.5e-57 225.3 304 58.6
CDE05G3137 Ceratophyllum demersum HOM05D003822 ORTHO05D004484 6.5e-57 225.3 304 54.6
PGR083G0513 Punica granatum HOM05D003822 ORTHO05D004484 8.4e-57 224.9 306 65.0
unitig_22.g5196 Utricularia gibba HOM05D003822 ORTHO05D004484 8.4e-57 224.9 316 54.4
Thhalv10021215m.g Eutrema salsugineum HOM05D003822 ORTHO05D004484 1.1e-56 224.6 314 58.0
A03p35330 Brassica napus HOM05D003822 ORTHO05D004484 2.5e-56 223.4 327 58.7
C03p42940 Brassica napus HOM05D003822 ORTHO05D004484 5.5e-56 222.2 329 52.9
AUR62023822 Chenopodium quinoa HOM05D003822 ORTHO05D004484 9.3e-56 221.5 303 54.1
Aa31LG5G18100 Aethionema arabicum HOM05D003822 ORTHO05D004484 1.6e-55 220.7 314 59.2
BolC3t16562H Brassica oleracea HOM05D003822 ORTHO05D004484 3.5e-55 219.5 310 64.5
ATR0752G090 Amborella trichopoda HOM05D003822 ORTHO05D004484 4.6e-55 219.2 302 59.3
Os07g0152800 Oryza sativa ssp. japonica HOM05D003822 ORTHO05D004484 7.9e-55 218.4 300 59.0
BcaC01g04277 Brassica carinata HOM05D003822 ORTHO05D004484 1.0e-54 218.0 327 52.6
MBI02_g24302_MAGBIO Magnolia biondii HOM05D003822 ORTHO05D004484 2.3e-54 216.9 303 57.1
C05p59760 Brassica napus HOM05D003822 ORTHO05D004484 1.1e-53 214.5 304 54.6
ECA248G1190 Erigeron canadensis HOM05D002050 ORTHO05D001949 1.5e-53 214.2 307 45.3
BolC5t34630H Brassica oleracea HOM05D003822 ORTHO05D004484 9.7e-53 211.5 321 58.9
CSS0026869 Camellia sinensis var. sinensis HOM05D003822 ORTHO05D004484 3.7e-52 209.5 302 62.6
Os03g0786000 Oryza sativa ssp. japonica HOM05D003822 ORTHO05D004484 4.1e-51 206.1 305 52.5
Migut.N00690 Erythranthe guttata HOM05D003822 ORTHO05D004484 6.9e-51 205.3 317 62.1
Manes.11G127100 Manihot esculenta HOM05D003822 ORTHO05D004484 6.9e-51 205.3 269 54.6
Zm00001eb059960 Zea mays HOM05D003822 ORTHO05D004484 7.7e-50 201.8 310 51.0
BcaB04g21287 Brassica carinata HOM05D003822 ORTHO05D004484 3.8e-49 199.5 307 50.8
BcaC05g29550 Brassica carinata HOM05D003822 ORTHO05D004484 1.9e-48 197.2 302 52.6
Zm00001eb117520 Zea mays HOM05D003822 ORTHO05D004484 4.2e-48 196.1 315 51.1
Lsat_1_v5_gn_5_175601 Lactuca sativa HOM05D003822 ORTHO05D004484 6.1e-47 192.2 318 52.8
Psat5g291600 Pisum sativum HOM05D003822 ORTHO05D004484 7.9e-47 191.8 245 75.1
Phvul.011G052000 Phaseolus vulgaris HOM05D003822 ORTHO05D004484 1.7e-44 184.1 135 65.9
Lj2C1109G11 Lonicera japonica HOM05D003822 ORTHO05D004484 4.1e-43 179.5 309 50.5
SEGI_01562 Sequoiadendron giganteum HOM05D003822 ORTHO05D004484 5.3e-43 179.1 305 49.8
PGSC0003DMG400020552 Solanum tuberosum HOM05D003822 ORTHO05D004484 6.9e-43 178.7 136 65.4
SGA_v2.0_scaffold95G28678 Striga asiatica HOM05D003822 ORTHO05D004484 6.9e-43 178.7 239 56.9
MBI18_g24478_MAGBIO Magnolia biondii HOM05D003822 ORTHO05D004484 4.5e-42 176.0 287 48.4
CSS0006211 Camellia sinensis var. sinensis HOM05D003822 ORTHO05D004484 2.2e-41 173.7 136 64.0
Oeu020438.1 Olea europaea HOM05D003822 ORTHO05D004484 2.9e-41 173.3 132 64.4
SEGI_07594 Sequoiadendron giganteum HOM05D003822 ORTHO05D004484 8.5e-41 171.8 309 46.3
Actinidia11655 Actinidia chinensis HOM05D003822 ORTHO05D004484 1.2e-39 167.9 132 65.9
Gorai.N001500 Gossypium raimondii HOM05D003822 ORTHO05D004484 3.3e-37 159.8 307 48.5
BraA01t04376Z Brassica rapa HOM05D003822 ORTHO05D004484 6.3e-36 155.6 137 57.7
BolC1t05546H Brassica oleracea HOM05D003822 ORTHO05D004484 4.1e-35 152.9 140 55.7
Manes.12G058104 Manihot esculenta HOM05D003822 ORTHO05D004484 1.6e-31 141.0 104 70.2
SMO146G0020 Selaginella moellendorffii HOM05D003822 ORTHO05D004484 8.0e-31 138.7 308 43.8
CBR_g38951 Chara braunii HOM05D003822 ORTHO05D004484 3.3e-29 133.3 131 51.1
AagrBONN_evm.TU.Sc2ySwM_368.3329 Anthoceros agrestis HOM05D003822 ORTHO05D004484 1.4e-27 127.9 307 52.8
Pp3c11_19790 Physcomitrium patens HOM05D003822 ORTHO05D004484 9.1e-27 125.2 317 49.8
Mapoly0080s0067 Marchantia polymorpha HOM05D003822 ORTHO05D004484 4.5e-26 122.9 326 48.8
Atru.chr4.1339 Acer truncatum HOM05D003822 ORTHO05D004484 1.3e-25 121.3 97 69.1
Oeu020439.1 Olea europaea HOM05D003822 ORTHO05D004484 1.7e-25 120.9 88 72.7
CSS0030404 Camellia sinensis var. sinensis HOM05D003822 ORTHO05D004484 5.0e-25 119.4 92 72.8
unitig_8.g3681 Utricularia gibba HOM05D003822 ORTHO05D004484 5.0e-25 119.4 105 69.5
MSTRG.12731 Avicennia marina HOM05D003822 ORTHO05D004484 3.2e-24 116.7 104 56.7
MSTRG.12733 Avicennia marina HOM05D003822 ORTHO05D004484 7.2e-24 115.5 209 47.8
FAN10G3558 Fragaria x ananassa HOM05D003822 ORTHO05D046505 8.8e-22 108.6 79 70.9
FvH4_7g08180 Fragaria vesca HOM05D003822 ORTHO05D046505 3.4e-21 106.7 78 70.5
CARHR082240 Cardamine hirsuta HOM05D003822 ORTHO05D004484 1.3e-20 104.8 196 70.4
Eucgr.B03613 Eucalyptus grandis HOM05D003822 ORTHO05D004484 2.4e-19 100.5 67 77.6
Eucgr.C02476 Eucalyptus grandis HOM05D003822 ORTHO05D004484 2.4e-19 100.5 63 79.4
FAN01G1095 Fragaria x ananassa HOM05D003822 ORTHO05D004484 4.1e-19 99.8 121 49.6
Gohir.A07G157900 Gossypium hirsutum HOM05D003822 ORTHO05D004484 2.9e-17 93.6 97 58.8
Thecc.04G171800 Theobroma cacao HOM05D003822 ORTHO05D004484 8.5e-17 92.0 61 65.6
FAN06G0586 Fragaria x ananassa HOM05D003822 ORTHO05D004484 1.9e-16 90.9 96 55.2
MCO15G241 Micromonas commoda HOM05D003822 ORTHO05D004484 1.2e-15 88.2 90 51.1
CARHR082220 Cardamine hirsuta HOM05D003822 ORTHO05D004484 1.5e-13 81.3 79 57.0
Cre13.g574700 Chlamydomonas reinhardtii HOM05D003822 ORTHO05D004484 2.0e-13 80.9 70 51.4
Hma1.2p1_0161F.1_g071790 Hydrangea macrophylla HOM05D003822 ORTHO05D004484 4.4e-13 79.7 142 38.0
SEGI_40649 Sequoiadendron giganteum HOM05D003822 ORTHO05D004484 8.3e-12 75.5 91 51.6
FAN06G2565 Fragaria x ananassa HOM05D003822 ORTHO05D001690 1.8e-11 74.3 83 51.8
FAN01G2016 Fragaria x ananassa HOM05D003822 ORTHO05D004484 5.4e-11 72.8 44 84.1
SEGI_02285 Sequoiadendron giganteum HOM05D003822 ORTHO05D004484 7.7e-10 68.9 86 48.8
CBR_g50337 Chara braunii HOM05D003822 ORTHO05D004484 2.9e-09 67.0 263 55.5
ATR0737G020 Amborella trichopoda HOM05D003822 ORTHO05D004484 2.8e-07 60.5 75 50.7
Zm00001eb392350 Zea mays HOM05D000367 ORTHO05D001438 3.0e-06 57.0 46 69.6


User provided reference genes

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