Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT11G1833 Cannabis sativa HOM05D004322 ORTHO05D005033 3.2e-110 401.7 198 100.0
RcHm_v2.0_Chr7g0223291 Rosa chinensis HOM05D004322 ORTHO05D005033 3.6e-90 335.1 198 80.3
MD15G1419900 Malus domestica HOM05D004322 ORTHO05D005033 1.8e-89 332.8 198 80.3
Glyma.08G183900 Glycine max HOM05D004322 ORTHO05D005033 8.9e-89 330.5 198 78.8
Prupe.1G564800 Prunus persica HOM05D004322 ORTHO05D005033 1.2e-88 330.1 198 79.3
PGR042G3064 Punica granatum HOM05D004322 ORTHO05D005033 3.4e-88 328.6 198 77.8
CiPaw.05G042000 Carya illinoinensis HOM05D004322 ORTHO05D005033 5.8e-88 327.8 198 81.3
Nn5g28787 Nelumbo nucifera HOM05D004322 ORTHO05D005033 5.8e-88 327.8 198 76.3
VMungo0251G0859 Vigna mungo HOM05D004322 ORTHO05D005033 7.6e-88 327.4 198 78.8
Phvul.006G211500 Phaseolus vulgaris HOM05D004322 ORTHO05D005033 1.7e-87 326.2 198 77.8
Gohir.D03G167900 Gossypium hirsutum HOM05D004322 ORTHO05D005033 3.8e-87 325.1 198 78.3
Gorai.003G177600 Gossypium raimondii HOM05D004322 ORTHO05D005033 3.8e-87 325.1 198 78.3
Manes.10G133500 Manihot esculenta HOM05D004322 ORTHO05D005033 4.9e-87 324.7 198 77.8
COL.COLO4_07504 Corchorus olitorius HOM05D004322 ORTHO05D005033 6.4e-87 324.3 198 79.3
Gohir.A03G004600 Gossypium hirsutum HOM05D004322 ORTHO05D005033 8.4e-87 323.9 198 77.8
arahy.Tifrunner.gnm1.ann1.1NY3A5 Arachis hypogaea HOM05D004322 ORTHO05D005033 1.1e-86 323.6 198 76.3
TAR376G0532 Trochodendron aralioides HOM05D004322 ORTHO05D005033 1.1e-86 323.6 198 76.8
Atru.chr6.1013_Atru.chr6.1014 Acer truncatum HOM05D004322 ORTHO05D005033 1.4e-86 323.2 198 77.3
Lj6g0010196 Lotus japonicus HOM05D004322 ORTHO05D005033 1.4e-86 323.2 198 76.8
Duzib205G0368 Durio zibethinus HOM05D004322 ORTHO05D005033 1.9e-86 322.8 198 76.3
Glyma.15G048900 Glycine max HOM05D004322 ORTHO05D005033 2.4e-86 322.4 198 75.8
arahy.Tifrunner.gnm1.ann1.H25YH4 Arachis hypogaea HOM05D004322 ORTHO05D005033 4.2e-86 321.6 198 76.3
FvH4_5g29770 Fragaria vesca HOM05D004322 ORTHO05D005033 4.2e-86 321.6 198 76.8
MD08G1227500 Malus domestica HOM05D004322 ORTHO05D005033 4.2e-86 321.6 198 76.3
Thecc.03G241900 Theobroma cacao HOM05D004322 ORTHO05D005033 5.4e-86 321.2 198 78.3
GSVIVG01029694001 Vitis vinifera HOM05D004322 ORTHO05D005033 5.4e-86 321.2 198 75.8
TWI23G0630 Tripterygium wilfordii HOM05D004322 ORTHO05D005033 7.1e-86 320.9 198 78.8
TWI23G1123 Tripterygium wilfordii HOM05D004322 ORTHO05D005033 7.1e-86 320.9 198 78.8
TWI14G0809 Tripterygium wilfordii HOM05D004322 ORTHO05D005033 1.6e-85 319.7 198 78.8
Actinidia39064 Actinidia chinensis HOM05D004322 ORTHO05D005033 6.6e-84 314.3 198 74.7
FAN08G1384 Fragaria x ananassa HOM05D004322 ORTHO05D005033 6.6e-84 314.3 206 73.8
Duzib084G1309 Durio zibethinus HOM05D004322 ORTHO05D005033 8.7e-84 313.9 198 75.8
FAN04G2215 Fragaria x ananassa HOM05D004322 ORTHO05D005033 1.9e-83 312.8 198 76.3
FAN18G2629 Fragaria x ananassa HOM05D004322 ORTHO05D005033 1.9e-83 312.8 206 73.3
Ca_00095_v3 Cicer arietinum L. HOM05D004322 ORTHO05D005033 3.3e-83 312.0 198 73.7
Ca_29934_v3 Cicer arietinum L. HOM05D004322 ORTHO05D005033 3.3e-83 312.0 198 73.7
Eucgr.I02706 Eucalyptus grandis HOM05D004322 ORTHO05D005033 3.3e-83 312.0 198 74.7
PGSC0003DMG400029776 Solanum tuberosum HOM05D004322 ORTHO05D005033 3.3e-83 312.0 198 75.8
Aqoxy5G02055 Aquilegia oxysepala HOM05D004322 ORTHO05D005033 4.3e-83 311.6 198 72.2
ClCG09G014140 Citrullus lanatus HOM05D004322 ORTHO05D005033 4.3e-83 311.6 198 74.7
Potri.001G207900 Populus trichocarpa HOM05D004322 ORTHO05D005033 4.3e-83 311.6 200 75.5
Sed0005743 Sechium edule HOM05D004322 ORTHO05D005033 2.1e-82 309.3 198 74.7
Ciclev10002548m.g Citrus clementina HOM05D004322 ORTHO05D005033 6.2e-82 307.8 199 75.9
Solyc01g104600.4 Solanum lycopersicum HOM05D004322 ORTHO05D005033 6.2e-82 307.8 198 74.2
AUR62018226 Chenopodium quinoa HOM05D004322 ORTHO05D005033 1.1e-81 307.0 198 72.7
Migut.N01026 Erythranthe guttata HOM05D004322 ORTHO05D005033 2.4e-81 305.8 198 72.7
ECA240G2745 Erigeron canadensis HOM05D004322 ORTHO05D005033 4.0e-81 305.1 198 72.2
Hma1.2p1_0557F.1_g178250 Hydrangea macrophylla HOM05D004322 ORTHO05D005033 5.3e-81 304.7 199 72.4
CsaV3_6G037290 Cucumis sativus L. HOM05D004322 ORTHO05D005033 9.0e-81 303.9 198 73.7
Dinv24253 Davidia involucrata HOM05D004322 ORTHO05D005033 9.0e-81 303.9 198 71.7
Thhalv10025920m.g Eutrema salsugineum HOM05D004322 ORTHO05D005033 2.0e-80 302.8 198 70.7
TPR.G19733 Trifolium pratense HOM05D004322 ORTHO05D005033 2.6e-80 302.4 198 71.2
EL10Ac2g03233 Beta vulgaris HOM05D004322 ORTHO05D005033 3.4e-80 302.0 200 71.0
HanXRQChr03g0066481 Helianthus annuus HOM05D004322 ORTHO05D005033 4.4e-80 301.6 198 70.2
Ah.11g045370 Amaranthus hybridus HOM05D004322 ORTHO05D005033 5.8e-80 301.2 198 69.7
Medtr2g007840 Medicago truncatula HOM05D004322 ORTHO05D005033 5.8e-80 301.2 198 70.2
PSO063G0058 Papaver somniferum HOM05D004322 ORTHO05D005033 5.8e-80 301.2 198 71.7
FAN13G1883 Fragaria x ananassa HOM05D004322 ORTHO05D005033 9.9e-80 300.4 198 72.7
vmacro01793 Vaccinium macrocarpon HOM05D004322 ORTHO05D005033 9.9e-80 300.4 217 68.7
PSO782G1933 Papaver somniferum HOM05D004322 ORTHO05D005033 1.3e-79 300.1 198 71.7
MELO3C014386.2 Cucumis melo HOM05D004322 ORTHO05D005033 3.8e-79 298.5 198 72.2
Aa31LG9G3260 Aethionema arabicum HOM05D004322 ORTHO05D005033 4.9e-79 298.1 198 70.7
AUR62037741 Chenopodium quinoa HOM05D004322 ORTHO05D005033 4.9e-79 298.1 198 70.7
Sp7g11930 Schrenkiella parvula HOM05D004322 ORTHO05D005033 6.4e-79 297.7 198 69.2
Aqoxy5G01565 Aquilegia oxysepala HOM05D004322 ORTHO05D005033 8.4e-79 297.4 198 69.2
MSTRG.5246 Avicennia marina HOM05D004322 ORTHO05D005033 8.4e-79 297.4 198 71.2
MSTRG.16544 Avicennia marina HOM05D004322 ORTHO05D005033 2.4e-78 295.8 198 70.2
BraA08t33032Z Brassica rapa HOM05D004322 ORTHO05D005033 2.4e-78 295.8 198 69.2
BolC8t48099H Brassica oleracea HOM05D004322 ORTHO05D005033 3.2e-78 295.4 198 69.2
BcaB04g18113 Brassica carinata HOM05D004322 ORTHO05D005033 5.4e-78 294.7 198 69.2
BcaC07g37720 Brassica carinata HOM05D004322 ORTHO05D005033 1.2e-77 293.5 198 68.2
CARHR220130 Cardamine hirsuta HOM05D004322 ORTHO05D005033 1.2e-77 293.5 198 70.2
AL7G42300 Arabidopsis lyrata HOM05D004322 ORTHO05D005033 1.6e-77 293.1 198 69.2
AT4G14110 Arabidopsis thaliana HOM05D004322 ORTHO05D005033 1.6e-77 293.1 198 69.7
BcaB02g08633 Brassica carinata HOM05D004322 ORTHO05D005033 1.6e-77 293.1 198 68.2
Cfa015337 Carpinus fangiana HOM05D004322 ORTHO05D005033 1.6e-77 293.1 176 79.0
THA.LOC104804784 Tarenaya hassleriana HOM05D004322 ORTHO05D005033 1.6e-77 293.1 198 69.2
BcaC02g09358 Brassica carinata HOM05D004322 ORTHO05D005033 2.1e-77 292.7 198 67.7
C04p41720 Brassica napus HOM05D004322 ORTHO05D005033 2.1e-77 292.7 198 67.7
SalBow6G5232 Salvia bowleyana HOM05D004322 ORTHO05D005033 3.5e-77 292.0 234 62.4
Carub.0007s2831 Capsella rubella HOM05D004322 ORTHO05D005033 4.6e-77 291.6 198 68.2
SalBow6G0151 Salvia bowleyana HOM05D004322 ORTHO05D005033 4.6e-77 291.6 234 62.0
A08p10330 Brassica napus HOM05D004322 ORTHO05D005033 1.7e-76 289.7 198 68.2
Peaxi162Scf01807g00011 Petunia axillaris HOM05D004322 ORTHO05D005033 3.9e-76 288.5 233 62.2
Hund13069 Selenicereus undatus HOM05D004322 ORTHO05D005033 3.9e-76 288.5 253 59.3
Sopen01g047110 Solanum pennellii HOM05D004322 ORTHO05D005033 8.7e-76 287.3 241 61.4
BolC3t14638H Brassica oleracea HOM05D004322 ORTHO05D005033 1.1e-75 287.0 198 67.2
A04p08040 Brassica napus HOM05D004322 ORTHO05D005033 1.9e-75 286.2 198 66.2
ATR0584G136 Amborella trichopoda HOM05D004322 ORTHO05D005033 1.3e-74 283.5 198 66.2
SGA_v2.0_scaffold145G36061 Striga asiatica HOM05D004322 ORTHO05D005033 6.2e-74 281.2 236 59.7
CDE05G0654 Ceratophyllum demersum HOM05D004322 ORTHO05D005033 1.4e-73 280.0 198 64.6
Lj9A313T47 Lonicera japonica HOM05D004322 ORTHO05D005033 2.4e-73 279.3 170 77.1
BolC4t25750H Brassica oleracea HOM05D004322 ORTHO05D005033 1.2e-72 276.9 219 60.7
BraA04t16492Z Brassica rapa HOM05D004322 ORTHO05D005033 4.5e-72 275.0 216 60.6
unitig_62.g23621 Utricularia gibba HOM05D004322 ORTHO05D005033 3.8e-71 271.9 198 66.7
CSS0031640 Camellia sinensis var. sinensis HOM05D004322 ORTHO05D005033 8.4e-71 270.8 171 72.5
Sc10g0004980 Simmondsia chinensis HOM05D004322 ORTHO05D005033 9.3e-70 267.3 173 71.7
HPP92_016157 Vanilla planifolia HOM05D004322 ORTHO05D005033 6.0e-69 264.6 198 64.1
Nitab4.5_0000249g0270 Nicotiana tabacum HOM05D004322 ORTHO05D005033 1.3e-68 263.5 188 68.1
BcaC01g05770 Brassica carinata HOM05D004322 ORTHO05D005033 6.7e-68 261.2 180 65.6
Medtr0153s0030 Medicago truncatula HOM05D004322 ORTHO05D005033 8.7e-68 260.8 170 69.4
Prupe.1G186200 Prunus persica HOM05D004322 ORTHO05D005033 3.3e-67 258.8 159 77.4
Dinv19343 Davidia involucrata HOM05D004322 ORTHO05D005033 8.1e-66 254.2 155 76.1
Lsat_1_v5_gn_9_116181 Lactuca sativa HOM05D004322 ORTHO05D005033 5.3e-65 251.5 191 63.4
Actinidia00226 Actinidia chinensis HOM05D004322 ORTHO05D005033 3.2e-62 242.3 198 62.1
Os04g0428900 Oryza sativa ssp. japonica HOM05D004322 ORTHO05D005033 1.6e-61 240.0 198 58.6
Sabra01G0160700 Salix brachista HOM05D004322 ORTHO05D005033 3.9e-60 235.3 167 67.1
Nitab4.5_0003071g0090 Nicotiana tabacum HOM05D004322 ORTHO05D005033 1.1e-59 233.8 198 59.6
Zm00001eb082980 Zea mays HOM05D004322 ORTHO05D005033 1.1e-59 233.8 198 55.6
SMO353G0429 Selaginella moellendorffii HOM05D004322 ORTHO05D005033 2.6e-56 222.6 198 53.0
AagrBONN_evm.TU.Sc2ySwM_228.2369 Anthoceros agrestis HOM05D004322 ORTHO05D005033 7.6e-56 221.1 198 50.0
Rhsim11G0132600 Rhododendron simsii HOM05D004322 ORTHO05D005033 1.7e-55 219.9 135 77.0
BolC9t60208H Brassica oleracea HOM05D004322 ORTHO05D005033 5.5e-54 214.9 145 66.2
Pp3c14_8990 Physcomitrium patens HOM05D004322 ORTHO05D005033 2.3e-52 209.5 191 49.7
Mapoly0036s0096 Marchantia polymorpha HOM05D004322 ORTHO05D005033 7.4e-51 204.5 195 49.7
Haze_01278 Corylus avellana HOM05D004322 ORTHO05D005033 2.4e-49 199.5 143 67.8
THA.LOC104809099 Tarenaya hassleriana HOM05D004322 ORTHO05D005033 6.9e-49 198.0 133 63.9
Thecc.07G026500 Theobroma cacao HOM05D004322 ORTHO05D005033 6.1e-45 184.9 185 55.7
CDE05G2724 Ceratophyllum demersum HOM05D004322 ORTHO05D005033 1.0e-44 184.1 130 66.2
Psat1g219720 Pisum sativum HOM05D004322 ORTHO05D005033 3.0e-44 182.6 120 65.8
QL04p052291 Quercus lobata HOM05D004322 ORTHO05D005033 5.1e-44 181.8 115 74.8
Cc02_g22150 Coffea canephora HOM05D004322 ORTHO05D005033 2.5e-43 179.5 115 67.8
Lalb_Chr15g0090601 Lupinus albus HOM05D004322 ORTHO05D005033 2.2e-42 176.4 130 61.5
CBR_g26281 Chara braunii HOM05D004322 ORTHO05D005033 3.7e-42 175.6 160 51.9
Cpa.g.sc157.24 Carica papaya HOM05D004322 ORTHO05D005033 4.8e-42 175.3 111 79.3
SHI16603 Sapria himalayana HOM05D004322 ORTHO05D005033 1.2e-37 160.6 142 52.8
CBR_g4180 Chara braunii HOM05D004322 ORTHO05D005033 1.7e-34 150.2 143 52.4
SEGI_09552 Sequoiadendron giganteum HOM05D004322 ORTHO05D005033 2.8e-34 149.4 115 53.9
SEGI_31940 Sequoiadendron giganteum HOM05D004322 ORTHO05D005033 3.7e-34 149.1 115 53.9
Medtr0153s0020 Medicago truncatula HOM05D004322 ORTHO05D005033 5.9e-32 141.7 87 65.5
Cc02_g22140 Coffea canephora HOM05D004322 ORTHO05D005033 8.0e-29 131.3 97 69.1
Lalb_Chr15g0090591 Lupinus albus HOM05D004322 ORTHO05D005033 1.0e-28 131.0 77 85.7
Zm00001eb422450 Zea mays HOM05D004322 ORTHO05D005033 1.5e-27 127.1 145 41.4
CAN.G1352.11 Capsicum annuum HOM05D004322 ORTHO05D005033 1.7e-26 123.6 115 55.7
CAN.G1352.10 Capsicum annuum HOM05D004322 ORTHO05D005033 3.7e-26 122.5 77 79.2
Manes.10G133677 Manihot esculenta HOM05D004322 ORTHO05D005033 1.1e-25 120.9 77 81.8
Sabra01G0160600 Salix brachista HOM05D004322 ORTHO05D005033 2.4e-25 119.8 77 79.2
QL11p019123 Quercus lobata HOM05D004322 ORTHO05D005033 7.0e-25 118.2 75 78.7
Potri.003G022001 Populus trichocarpa HOM05D004322 ORTHO05D005033 3.8e-23 112.5 77 72.7
Oeu044826.1 Olea europaea HOM05D004322 ORTHO05D005033 6.5e-23 111.7 77 74.0
Oeu044828.1 Olea europaea HOM05D004322 ORTHO05D005033 6.5e-23 111.7 77 74.0
MBI18_g28448_MAGBIO Magnolia biondii HOM05D004322 ORTHO05D005033 8.5e-23 111.3 65 76.9
Gohir.D08G183600 Gossypium hirsutum HOM05D004322 ORTHO05D005033 1.5e-22 110.5 77 71.4
Glyma.10G118567 Glycine max HOM05D004322 ORTHO05D005033 1.6e-21 107.1 69 78.3
Thecc.07G026400 Theobroma cacao HOM05D004322 ORTHO05D005033 2.1e-21 106.7 68 70.6
SEGI_18567 Sequoiadendron giganteum HOM05D004322 ORTHO05D005033 1.4e-20 104.0 81 65.4
Cpa.g.sc157.23 Carica papaya HOM05D004322 ORTHO05D005033 1.5e-19 100.5 54 85.2
Oeu012736.1 Olea europaea HOM05D004322 ORTHO05D005033 2.0e-19 100.1 72 70.8
Glyma.10G118633 Glycine max HOM05D004322 ORTHO05D005033 1.7e-18 97.1 99 46.5
Medtr0153s0060 Medicago truncatula HOM05D004322 ORTHO05D005033 1.7e-18 97.1 145 42.8
Gohir.D12G215800 Gossypium hirsutum HOM05D004322 ORTHO05D005033 6.3e-18 95.1 75 64.0
Medtr2g007855 Medicago truncatula HOM05D004322 ORTHO05D005033 1.4e-17 94.0 65 69.2
QL11p019127 Quercus lobata HOM05D004322 ORTHO05D005033 5.5e-14 82.0 64 64.1
PRCOL_00004865 Prasinoderma coloniale HOM05D004322 ORTHO05D005033 2.1e-13 80.1 191 25.1
Lsat_1_v5_gn_9_65501 Lactuca sativa HOM05D001588 ORTHO05D002975 4.7e-13 79.0 54 59.3
TPR.G19730 Trifolium pratense HOM05D004322 ORTHO05D005033 1.0e-12 77.8 61 55.7
Cre14.g608850 Chlamydomonas reinhardtii HOM05D004322 ORTHO05D005033 6.8e-12 75.1 119 34.5
BcaB04g18035 Brassica carinata HOM05D004322 ORTHO05D005033 4.4e-11 72.4 56 53.6
Lsat_1_v5_gn_7_68880 Lactuca sativa HOM05D004322 ORTHO05D005033 1.3e-10 70.9 54 51.9
TPR.G19742 Trifolium pratense HOM05D004322 ORTHO05D005033 1.3e-10 70.9 46 73.9
BcaB07g33266 Brassica carinata HOM05D004322 ORTHO05D005033 1.8e-09 67.0 56 50.0
SEGI_23686 Sequoiadendron giganteum HOM05D004322 ORTHO05D005033 9.2e-09 64.7 61 52.5
HPP92_016147 Vanilla planifolia HOM05D004322 ORTHO05D005033 1.6e-08 63.9 55 54.5
TAR381G0540 Trochodendron aralioides HOM05D004322 ORTHO05D005033 9.5e-06 54.7 44 61.4


User provided reference genes

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