Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT11G1798 Cannabis sativa HOM05D004575 ORTHO05D005774 3.9e-105 384.8 195 100.0
AUR62039306 Chenopodium quinoa HOM05D004575 ORTHO05D005774 3.1e-102 375.2 195 96.9
Prupe.7G260200 Prunus persica HOM05D004575 ORTHO05D005774 3.1e-102 375.2 195 96.4
CiPaw.15G174300 Carya illinoinensis HOM05D004575 ORTHO05D005774 4.1e-102 374.8 195 96.4
Cpa.g.sc46.126 Carica papaya HOM05D004575 ORTHO05D005774 5.3e-102 374.4 195 96.4
Cfa020846 Carpinus fangiana HOM05D004575 ORTHO05D005774 5.3e-102 374.4 195 96.4
Manes.14G111600 Manihot esculenta HOM05D004575 ORTHO05D005774 5.3e-102 374.4 195 96.4
PSO170G2264 Papaver somniferum HOM05D004575 ORTHO05D005774 5.3e-102 374.4 195 95.9
Potri.006G187300 Populus trichocarpa HOM05D004575 ORTHO05D005774 5.3e-102 374.4 195 96.4
RcHm_v2.0_Chr2g0085961 Rosa chinensis HOM05D004575 ORTHO05D005774 6.9e-102 374.0 195 95.9
GSVIVG01023596001 Vitis vinifera HOM05D004575 ORTHO05D005774 6.9e-102 374.0 195 96.4
Atru.chr7.129 Acer truncatum HOM05D004575 ORTHO05D005774 9.1e-102 373.6 195 95.9
TWI34G1141 Tripterygium wilfordii HOM05D004575 ORTHO05D005774 9.1e-102 373.6 195 96.4
Duzib150G0006 Durio zibethinus HOM05D004575 ORTHO05D005774 1.2e-101 373.2 195 95.9
Thecc.09G033600 Theobroma cacao HOM05D004575 ORTHO05D005774 1.2e-101 373.2 195 95.9
Duzib187G1707 Durio zibethinus HOM05D004575 ORTHO05D005774 1.5e-101 372.9 195 95.4
FvH4_1g01170 Fragaria vesca HOM05D004575 ORTHO05D005774 2.0e-101 372.5 195 95.4
MD02G1009800 Malus domestica HOM05D004575 ORTHO05D005774 2.6e-101 372.1 195 95.4
Manes.06G037700 Manihot esculenta HOM05D004575 ORTHO05D005774 2.6e-101 372.1 195 95.4
Cc06_g15230 Coffea canephora HOM05D004575 ORTHO05D005774 3.4e-101 371.7 195 94.9
Nn8g39815 Nelumbo nucifera HOM05D004575 ORTHO05D005774 5.9e-101 370.9 195 95.4
Lj6g0023555 Lotus japonicus HOM05D004575 ORTHO05D005774 7.7e-101 370.5 195 94.9
Dinv42882 Davidia involucrata HOM05D004575 ORTHO05D005774 1.0e-100 370.2 195 94.4
TWI32G0637 Tripterygium wilfordii HOM05D004575 ORTHO05D005774 1.0e-100 370.2 195 95.4
Hma1.2p1_0171F.1_g075580 Hydrangea macrophylla HOM05D004575 ORTHO05D005774 1.3e-100 369.8 195 94.9
arahy.Tifrunner.gnm1.ann1.Y2RET6 Arachis hypogaea HOM05D004575 ORTHO05D005774 1.7e-100 369.4 195 94.4
VMungo1383G0542 Vigna mungo HOM05D004575 ORTHO05D005774 1.7e-100 369.4 195 94.4
Ca_03494_v3 Cicer arietinum L. HOM05D004575 ORTHO05D005774 2.2e-100 369.0 195 94.4
Glyma.11G226500 Glycine max HOM05D004575 ORTHO05D005774 2.2e-100 369.0 195 94.4
Glyma.18G030800 Glycine max HOM05D004575 ORTHO05D005774 3.8e-100 368.2 195 94.4
ATR0626G208 Amborella trichopoda HOM05D004575 ORTHO05D005774 5.0e-100 367.9 195 94.4
CSS0046088 Camellia sinensis var. sinensis HOM05D004575 ORTHO05D005774 5.0e-100 367.9 195 93.3
Lj6g0023669 Lotus japonicus HOM05D004575 ORTHO05D005774 5.0e-100 367.9 195 93.8
Phvul.001G239800 Phaseolus vulgaris HOM05D004575 ORTHO05D005774 5.0e-100 367.9 195 93.8
CDE05G0409 Ceratophyllum demersum HOM05D004575 ORTHO05D005774 6.5e-100 367.5 195 92.8
ClCG06G001160 Citrullus lanatus HOM05D004575 ORTHO05D005774 1.1e-99 366.7 195 93.3
Psat5g127440 Pisum sativum HOM05D004575 ORTHO05D005774 1.1e-99 366.7 195 93.8
CsaV3_6G007090 Cucumis sativus L. HOM05D004575 ORTHO05D005774 1.4e-99 366.3 195 93.3
Dinv43218 Davidia involucrata HOM05D004575 ORTHO05D005774 1.4e-99 366.3 193 93.8
Ah.09g232410 Amaranthus hybridus HOM05D004575 ORTHO05D005774 1.9e-99 365.9 195 92.8
Sed0010445 Sechium edule HOM05D004575 ORTHO05D005774 1.9e-99 365.9 195 93.3
Os01g0708600 Oryza sativa ssp. japonica HOM05D004575 ORTHO05D005774 2.5e-99 365.5 195 92.3
Potri.018G110000 Populus trichocarpa HOM05D004575 ORTHO05D005774 2.5e-99 365.5 195 94.4
Zm00001eb271220 Zea mays HOM05D004575 ORTHO05D005774 2.5e-99 365.5 195 92.3
Lalb_Chr12g0198611 Lupinus albus HOM05D004575 ORTHO05D005774 3.2e-99 365.2 195 93.3
THA.LOC104813540 Tarenaya hassleriana HOM05D004575 ORTHO05D005774 3.2e-99 365.2 195 93.3
Medtr3g070070 Medicago truncatula HOM05D004575 ORTHO05D005774 5.5e-99 364.4 195 93.3
AL8G34130 Arabidopsis lyrata HOM05D004575 ORTHO05D005774 7.2e-99 364.0 193 93.8
BolC3t13904H Brassica oleracea HOM05D004575 ORTHO05D005774 7.2e-99 364.0 193 93.8
Thhalv10014736m.g Eutrema salsugineum HOM05D004575 ORTHO05D005774 7.2e-99 364.0 193 93.8
Aqoxy7G03458 Aquilegia oxysepala HOM05D004575 ORTHO05D005774 9.4e-99 363.6 195 92.3
Nn2g12311 Nelumbo nucifera HOM05D004575 ORTHO05D005774 9.4e-99 363.6 199 93.0
SalBow1G0111 Salvia bowleyana HOM05D004575 ORTHO05D005774 9.4e-99 363.6 195 90.8
Ciclev10009392m.g Citrus clementina HOM05D004575 ORTHO05D005774 1.2e-98 363.2 187 96.8
Gohir.A13G184800 Gossypium hirsutum HOM05D004575 ORTHO05D005774 1.2e-98 363.2 195 92.3
Gohir.D13G191200 Gossypium hirsutum HOM05D004575 ORTHO05D005774 1.2e-98 363.2 195 92.3
Gorai.009G054900 Gossypium raimondii HOM05D004575 ORTHO05D005774 1.2e-98 363.2 195 92.3
Nitab4.5_0006294g0110 Nicotiana tabacum HOM05D004575 ORTHO05D005774 1.2e-98 363.2 195 91.8
TAR625G1476 Trochodendron aralioides HOM05D004575 ORTHO05D005774 1.2e-98 363.2 195 92.8
Aa31LG3G13850 Aethionema arabicum HOM05D004575 ORTHO05D005774 1.6e-98 362.8 193 93.3
AT5G58030 Arabidopsis thaliana HOM05D004575 ORTHO05D005774 1.6e-98 362.8 193 93.3
Carub.0008s1858 Capsella rubella HOM05D004575 ORTHO05D005774 1.6e-98 362.8 193 93.3
CARHR271840 Cardamine hirsuta HOM05D004575 ORTHO05D005774 1.6e-98 362.8 193 93.3
Sed0010156 Sechium edule HOM05D004575 ORTHO05D005774 1.6e-98 362.8 195 91.8
BolC2t07482H Brassica oleracea HOM05D004575 ORTHO05D005774 2.1e-98 362.5 193 93.8
MSTRG.6119 Avicennia marina HOM05D004575 ORTHO05D005774 2.7e-98 362.1 195 90.3
Migut.K00340 Erythranthe guttata HOM05D004575 ORTHO05D005774 2.7e-98 362.1 195 91.8
THA.LOC104817827 Tarenaya hassleriana HOM05D004575 ORTHO05D005774 2.7e-98 362.1 195 92.8
Gohir.A05G051600 Gossypium hirsutum HOM05D004575 ORTHO05D005774 3.6e-98 361.7 195 91.8
Oeu050476.1 Olea europaea HOM05D004575 ORTHO05D005774 3.6e-98 361.7 195 91.3
HanXRQChr15g0473271 Helianthus annuus HOM05D004575 ORTHO05D005774 4.7e-98 361.3 195 90.8
Haze_19234 Corylus avellana HOM05D004575 ORTHO05D005774 6.1e-98 360.9 186 96.8
Gohir.D05G053100 Gossypium hirsutum HOM05D004575 ORTHO05D005774 1.8e-97 359.4 195 91.8
QL02p092713 Quercus lobata HOM05D004575 ORTHO05D005774 1.8e-97 359.4 185 96.8
TAR636G1369 Trochodendron aralioides HOM05D004575 ORTHO05D005774 1.8e-97 359.4 185 96.8
Eucgr.C00362 Eucalyptus grandis HOM05D004575 ORTHO05D005774 2.3e-97 359.0 185 96.2
Gorai.013G217200 Gossypium raimondii HOM05D004575 ORTHO05D005774 2.3e-97 359.0 195 91.3
AUR62022430 Chenopodium quinoa HOM05D004575 ORTHO05D005774 3.0e-97 358.6 185 96.8
CAN.G1263.31 Capsicum annuum HOM05D004575 ORTHO05D005774 3.9e-97 358.2 195 90.8
ECA246G3736 Erigeron canadensis HOM05D004575 ORTHO05D005774 3.9e-97 358.2 196 90.8
Lsat_1_v5_gn_6_106621 Lactuca sativa HOM05D004575 ORTHO05D005774 5.2e-97 357.8 195 89.2
Sabra06G0143200 Salix brachista HOM05D004575 ORTHO05D005774 6.7e-97 357.5 188 94.1
COL.COLO4_18777 Corchorus olitorius HOM05D000537 ORTHO05D005774 8.8e-97 357.1 185 95.7
Solyc04g015050.3 Solanum lycopersicum HOM05D004575 ORTHO05D005774 8.8e-97 357.1 195 90.8
Sopen04g007070 Solanum pennellii HOM05D004575 ORTHO05D005774 8.8e-97 357.1 195 90.8
CSS0038411 Camellia sinensis var. sinensis HOM05D004575 ORTHO05D005774 1.5e-96 356.3 189 92.6
Dinv41397 Davidia involucrata HOM05D004575 ORTHO05D005774 1.5e-96 356.3 189 93.7
PGSC0003DMG400015006 Solanum tuberosum HOM05D004575 ORTHO05D005774 1.5e-96 356.3 193 91.2
DCAR_029638 Daucus carota HOM05D004575 ORTHO05D005774 2.0e-96 355.9 187 93.0
unitig_0.g919 Utricularia gibba HOM05D004575 ORTHO05D005774 4.4e-96 354.8 193 89.6
CSS0012079 Camellia sinensis var. sinensis HOM05D004575 ORTHO05D005774 5.7e-96 354.4 189 92.6
BraA03t10558Z Brassica rapa HOM05D004575 ORTHO05D005774 1.3e-95 353.2 186 94.1
MELO3C022418.2 Cucumis melo HOM05D004575 ORTHO05D005774 2.2e-95 352.4 186 93.0
Sp6g19710 Schrenkiella parvula HOM05D004575 ORTHO05D005774 2.2e-95 352.4 186 94.1
BcaB01g04472 Brassica carinata HOM05D004575 ORTHO05D005774 3.7e-95 351.7 185 94.1
A03p12440 Brassica napus HOM05D004575 ORTHO05D005774 3.7e-95 351.7 185 94.1
C03p14640 Brassica napus HOM05D004575 ORTHO05D005774 3.7e-95 351.7 185 94.1
BraA02t05876Z Brassica rapa HOM05D004575 ORTHO05D005774 3.7e-95 351.7 186 94.1
A02p08040 Brassica napus HOM05D004575 ORTHO05D005774 1.1e-94 350.1 185 94.1
C02p13680 Brassica napus HOM05D004575 ORTHO05D005774 1.1e-94 350.1 185 94.1
SEGI_30669 Sequoiadendron giganteum HOM05D004575 ORTHO05D005774 1.4e-94 349.7 195 87.7
SGA_v2.0_scaffold45G17045 Striga asiatica HOM05D004575 ORTHO05D005774 1.2e-93 346.7 186 90.3
Sabra18G0093000 Salix brachista HOM05D004575 ORTHO05D005774 1.6e-93 346.3 218 82.6
Lsat_1_v5_gn_9_77921 Lactuca sativa HOM05D004575 ORTHO05D005774 7.7e-93 344.0 186 89.8
Sabra06G0142200 Salix brachista HOM05D004575 ORTHO05D005774 2.2e-92 342.4 216 81.9
EL10Ac4g09955 Beta vulgaris HOM05D004575 ORTHO05D005774 2.9e-92 342.0 195 88.7
AagrBONN_evm.TU.Sc2ySwM_228.2396 Anthoceros agrestis HOM05D004575 ORTHO05D005774 2.5e-91 339.0 195 84.6
Mapoly0012s0171 Marchantia polymorpha HOM05D004575 ORTHO05D005774 4.7e-90 334.7 195 84.6
THA.LOC104817825 Tarenaya hassleriana HOM05D004575 ORTHO05D005774 6.1e-90 334.3 226 77.4
Nitab4.5_0000147g0360 Nicotiana tabacum HOM05D004575 ORTHO05D005774 1.4e-89 333.2 195 85.6
Peaxi162Scf00811g00111 Petunia axillaris HOM05D004575 ORTHO05D005774 3.3e-88 328.6 195 84.6
CDE05G3286 Ceratophyllum demersum HOM05D004575 ORTHO05D005774 4.1e-86 321.6 195 84.1
HPP92_023290 Vanilla planifolia HOM05D004575 ORTHO05D005774 4.1e-86 321.6 176 90.9
CBR_g31075 Chara braunii HOM05D004575 ORTHO05D005774 5.3e-86 321.2 194 78.4
SMO356G0367 Selaginella moellendorffii HOM05D004575 ORTHO05D005774 1.2e-85 320.1 195 79.5
PSO017G5222 Papaver somniferum HOM05D004575 ORTHO05D005774 6.1e-82 307.8 195 83.1
PGR142G2168 Punica granatum HOM05D004575 ORTHO05D005774 6.1e-82 307.8 194 83.5
FAN19G2168 Fragaria x ananassa HOM05D004575 ORTHO05D005774 8.0e-82 307.4 195 83.1
arahy.Tifrunner.gnm1.ann1.C8YHGX Arachis hypogaea HOM05D004575 ORTHO05D005774 6.8e-81 304.3 195 82.1
Hund04571 Selenicereus undatus HOM05D004575 ORTHO05D005774 1.7e-79 299.7 195 80.5
FAN26G2236 Fragaria x ananassa HOM05D004575 ORTHO05D005774 2.7e-77 292.4 186 82.3
FAN28G0045 Fragaria x ananassa HOM05D004575 ORTHO05D005774 2.7e-77 292.4 186 82.3
FAN23G2865 Fragaria x ananassa HOM05D004575 ORTHO05D005774 1.7e-76 289.7 186 81.7
HanXRQChr01g0001761 Helianthus annuus HOM05D004575 ORTHO05D005774 4.2e-75 285.0 166 84.9
Sc10g0009430 Simmondsia chinensis HOM05D004575 ORTHO05D005774 9.5e-75 283.9 150 95.3
Pp3c22_3220 Physcomitrium patens HOM05D004575 ORTHO05D005774 4.4e-72 275.0 195 72.3
MBI14_g37099_MAGBIO Magnolia biondii HOM05D004575 ORTHO05D003073 6.6e-68 261.2 136 93.4
MCO07G641 Micromonas commoda HOM05D004575 ORTHO05D005774 1.1e-62 243.8 189 64.0
Pp3c19_5830 Physcomitrium patens HOM05D004575 ORTHO05D005774 2.7e-61 239.2 142 81.0
TPR.G29813 Trifolium pratense HOM05D004575 ORTHO05D005774 2.5e-59 232.6 124 92.7
MBI10_g16410_MAGBIO Magnolia biondii HOM05D004575 ORTHO05D005774 3.3e-59 232.3 180 68.3
MBI19_g38854_MAGBIO Magnolia biondii HOM05D004575 ORTHO05D005774 4.9e-55 218.4 119 92.4
Rhsim04G0120400 Rhododendron simsii HOM05D004575 ORTHO05D005774 1.1e-54 217.2 148 77.0
MBI15_g16628_MAGBIO Magnolia biondii HOM05D004575 ORTHO05D005774 2.4e-54 216.1 123 87.0
BcaB08g36156 Brassica carinata HOM05D004575 ORTHO05D005774 1.3e-47 193.7 187 61.5
Cre03.g146467 Chlamydomonas reinhardtii HOM05D004575 ORTHO05D005774 4.1e-46 188.7 188 51.1
Actinidia04286 Actinidia chinensis HOM05D004575 ORTHO05D005774 7.8e-45 184.5 94 97.9
PRCOL_00004142 Prasinoderma coloniale HOM05D004575 ORTHO05D005774 3.0e-44 182.6 173 53.8
MBI15_g43789_MAGBIO Magnolia biondii HOM05D004575 ORTHO05D005774 1.4e-38 163.7 123 70.7
Actinidia38338 Actinidia chinensis HOM05D004575 ORTHO05D005774 3.2e-38 162.5 83 94.0
MBI19_g16412_MAGBIO Magnolia biondii HOM05D004575 ORTHO05D005774 5.6e-35 151.8 79 97.5
MBI04_g06937_MAGBIO Magnolia biondii HOM05D004575 ORTHO05D005774 9.6e-35 151.0 75 96.0
MBI18_g29808_MAGBIO Magnolia biondii HOM05D004575 ORTHO05D005774 2.8e-34 149.4 75 94.7
Gohir.D05G367100 Gossypium hirsutum HOM05D004575 ORTHO05D005774 1.1e-27 127.5 70 91.4
Gohir.D10G164601 Gossypium hirsutum HOM05D004575 ORTHO05D005774 1.9e-27 126.7 70 91.4
Peaxi162Scf00827g00622 Petunia axillaris HOM05D004575 ORTHO05D005774 9.3e-22 107.8 58 87.9
Lj7A455T27 Lonicera japonica HOM05D004575 ORTHO05D005774 3.0e-20 102.8 54 94.4
Nitab4.5_0001296g0040 Nicotiana tabacum HOM05D001883 ORTHO05D002184 9.6e-19 97.8 108 54.6
A10p16140 Brassica napus HOM05D004575 ORTHO05D005774 4.8e-18 95.5 109 51.4
Gorai.010G087100 Gossypium raimondii HOM05D004575 ORTHO05D005774 2.9e-15 86.3 47 87.2
C09p49950 Brassica napus HOM05D004575 ORTHO05D033743 3.2e-14 82.8 90 54.4
BolC3t13444H Brassica oleracea HOM05D004575 ORTHO05D010533 7.1e-14 81.6 42 92.9
AagrBONN_evm.TU.Sc2ySwM_368.1888 Anthoceros agrestis HOM05D004575 ORTHO05D004251 1.2e-13 80.9 52 69.2
Lj7A455G28 Lonicera japonica HOM05D004575 ORTHO05D005774 1.2e-13 80.9 104 47.1
Gorai.010G090900 Gossypium raimondii HOM05D004575 ORTHO05D005774 7.9e-13 78.2 57 70.2
Gohir.D02G098900 Gossypium hirsutum HOM05D004575 ORTHO05D047984 1.8e-12 77.0 41 92.7
Gorai.007G286700 Gossypium raimondii HOM05D004575 ORTHO05D047984 3.9e-12 75.9 46 84.8
RcHm_v2.0_Chr2g0167881 Rosa chinensis HOM05D004575 ORTHO05D005774 4.3e-11 72.4 42 85.7
RcHm_v2.0_Chr2g0167891 Rosa chinensis HOM05D004575 ORTHO05D005774 4.3e-11 72.4 42 85.7
A01p23900 Brassica napus HOM05D001825 ORTHO05D010533 5.5e-06 55.5 39 69.2


User provided reference genes

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