Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT11G1749 Cannabis sativa HOM05D004311 ORTHO05D005145 1.6e-269 932.2 485 100.0
CiPaw.01G102900 Carya illinoinensis HOM05D004311 ORTHO05D005145 3.1e-103 379.8 420 52.6
FAN17G0085 Fragaria x ananassa HOM05D004311 ORTHO05D005145 1.9e-100 370.5 423 51.8
GSVIVG01013563001 Vitis vinifera HOM05D004311 ORTHO05D005145 8.0e-99 365.2 436 48.9
FvH4_4g11290 Fragaria vesca HOM05D004311 ORTHO05D005145 2.3e-98 363.6 418 51.7
FAN07G0445 Fragaria x ananassa HOM05D004311 ORTHO05D005145 8.9e-98 361.7 422 51.4
Thecc.04G184200 Theobroma cacao HOM05D004311 ORTHO05D005145 2.0e-97 360.5 439 49.4
Potri.007G124150 Populus trichocarpa HOM05D004311 ORTHO05D005145 2.9e-96 356.7 427 50.6
Cfa015780 Carpinus fangiana HOM05D004311 ORTHO05D005145 3.7e-96 356.3 419 51.1
Atru.chr3.1596 Acer truncatum HOM05D004311 ORTHO05D005145 1.2e-94 351.3 426 49.3
Sabra17G0023900 Salix brachista HOM05D004311 ORTHO05D005145 7.8e-94 348.6 453 47.9
Ciclev10019191m.g Citrus clementina HOM05D004311 ORTHO05D005145 1.0e-93 348.2 419 49.4
Haze_00714 Corylus avellana HOM05D004311 ORTHO05D005145 1.7e-93 347.4 468 47.2
Potri.017G036200 Populus trichocarpa HOM05D004311 ORTHO05D005145 1.7e-93 347.4 460 46.5
Gohir.A10G134400 Gossypium hirsutum HOM05D004311 ORTHO05D005145 3.0e-93 346.7 434 48.8
Atru.chr5.2612 Acer truncatum HOM05D004311 ORTHO05D005145 3.3e-92 343.2 433 47.6
Manes.11G116001 Manihot esculenta HOM05D004311 ORTHO05D005145 4.7e-91 339.3 470 45.1
Gorai.011G145800 Gossypium raimondii HOM05D004311 ORTHO05D005145 1.4e-90 337.8 434 47.9
PGR083G0820 Punica granatum HOM05D004311 ORTHO05D005145 1.8e-90 337.4 412 49.3
Gohir.D10G132100 Gossypium hirsutum HOM05D004311 ORTHO05D005145 4.0e-90 336.3 434 47.9
Duzib268G0197 Durio zibethinus HOM05D004311 ORTHO05D005145 2.6e-89 333.6 443 47.4
Eucgr.A00251 Eucalyptus grandis HOM05D004311 ORTHO05D005145 9.8e-89 331.6 416 48.6
Actinidia35905 Actinidia chinensis HOM05D004311 ORTHO05D005145 1.3e-88 331.3 420 47.4
arahy.Tifrunner.gnm1.ann1.D3CYL9 Arachis hypogaea HOM05D004311 ORTHO05D005145 8.3e-88 328.6 403 48.9
Lj5g0018220 Lotus japonicus HOM05D004311 ORTHO05D005145 8.3e-88 328.6 413 47.7
Peaxi162Scf00319g00915 Petunia axillaris HOM05D004311 ORTHO05D005145 8.3e-88 328.6 431 45.9
TWI34G1341 Tripterygium wilfordii HOM05D004311 ORTHO05D005145 1.1e-87 328.2 430 48.4
Phvul.007G004100 Phaseolus vulgaris HOM05D004311 ORTHO05D005145 9.2e-87 325.1 410 49.5
arahy.Tifrunner.gnm1.ann1.TTS68P Arachis hypogaea HOM05D004311 ORTHO05D005145 1.2e-86 324.7 403 47.9
RcHm_v2.0_Chr4g0407531 Rosa chinensis HOM05D004311 ORTHO05D005145 1.6e-86 324.3 324 57.1
Dinv44218 Davidia involucrata HOM05D004311 ORTHO05D005145 6.0e-86 322.4 423 47.8
Ca_11399_v3 Cicer arietinum L. HOM05D004311 ORTHO05D005145 1.0e-85 321.6 411 47.4
Ca_11402_v3 Cicer arietinum L. HOM05D004311 ORTHO05D005145 1.0e-85 321.6 411 47.4
Ca_29593_v3 Cicer arietinum L. HOM05D004311 ORTHO05D005145 1.0e-85 321.6 411 47.4
CAN.G710.65 Capsicum annuum HOM05D004311 ORTHO05D005145 5.0e-85 319.3 402 47.0
Lalb_Chr21g0307601 Lupinus albus HOM05D004311 ORTHO05D005145 5.0e-85 319.3 438 45.9
Sed0012126 Sechium edule HOM05D004311 ORTHO05D005145 8.6e-85 318.5 405 47.2
MD04G1038300 Malus domestica HOM05D004311 ORTHO05D005145 2.5e-84 317.0 296 59.8
Cc03_g13030 Coffea canephora HOM05D004311 ORTHO05D005145 3.3e-84 316.6 428 46.3
COL.COLO4_24387 Corchorus olitorius HOM05D004311 ORTHO05D005145 2.1e-83 313.9 474 42.8
QL10p045440 Quercus lobata HOM05D004311 ORTHO05D005145 2.1e-83 313.9 590 38.0
MELO3C017696.2 Cucumis melo HOM05D004311 ORTHO05D005145 3.6e-83 313.2 405 48.6
Glyma.20G245800 Glycine max HOM05D004311 ORTHO05D005145 4.7e-83 312.8 405 48.6
CsaV3_4G003570 Cucumis sativus L. HOM05D004311 ORTHO05D005145 1.1e-82 311.6 410 46.3
Glyma.10G295800 Glycine max HOM05D004311 ORTHO05D005145 8.9e-82 308.5 452 43.6
Psat6g241440 Pisum sativum HOM05D004311 ORTHO05D005145 2.0e-81 307.4 400 48.0
Nitab4.5_0006710g0020 Nicotiana tabacum HOM05D004311 ORTHO05D005145 2.6e-81 307.0 418 44.3
Sopen09g036480 Solanum pennellii HOM05D004311 ORTHO05D005145 4.4e-81 306.2 412 46.1
EL10Ac3g06308 Beta vulgaris HOM05D004311 ORTHO05D005145 1.7e-80 304.3 446 42.6
Medtr1g116530 Medicago truncatula HOM05D004311 ORTHO05D005145 1.7e-80 304.3 414 46.4
TPR.G10413 Trifolium pratense HOM05D004311 ORTHO05D005145 1.7e-80 304.3 401 46.6
SGA_v2.0_scaffold12G06156 Striga asiatica HOM05D004311 ORTHO05D005145 2.2e-80 303.9 429 46.4
Solyc09g098560.2 Solanum lycopersicum HOM05D004311 ORTHO05D005145 6.4e-80 302.4 409 45.5
VMungo0720G0448 Vigna mungo HOM05D004311 ORTHO05D005145 6.4e-80 302.4 394 46.4
vmacro00589 Vaccinium macrocarpon HOM05D004311 ORTHO05D005145 8.3e-80 302.0 329 53.2
Rhsim09G0031800 Rhododendron simsii HOM05D004311 ORTHO05D005145 2.4e-79 300.4 518 41.7
Sc19g0002150 Simmondsia chinensis HOM05D004311 ORTHO05D005145 3.2e-79 300.1 409 44.3
THA.LOC104821356 Tarenaya hassleriana HOM05D004311 ORTHO05D005145 3.2e-79 300.1 397 46.9
Hund12225 Selenicereus undatus HOM05D004311 ORTHO05D005145 6.0e-78 295.8 403 43.9
AUR62030033 Chenopodium quinoa HOM05D004311 ORTHO05D005145 1.7e-77 294.3 409 43.0
MBI08_g33649_MAGBIO Magnolia biondii HOM05D004311 ORTHO05D005145 1.9e-76 290.8 445 41.3
TAR375G1135 Trochodendron aralioides HOM05D004311 ORTHO05D005145 1.9e-76 290.8 419 45.6
MSTRG.20570 Avicennia marina HOM05D004311 ORTHO05D005145 3.3e-76 290.0 393 46.6
Nn2g11494 Nelumbo nucifera HOM05D004311 ORTHO05D005145 4.3e-76 289.7 416 44.0
Lj6A60T46 Lonicera japonica HOM05D004311 ORTHO05D005145 1.2e-75 288.1 316 53.5
AUR62002610 Chenopodium quinoa HOM05D004311 ORTHO05D005145 3.6e-75 286.6 408 42.4
Lsat_1_v5_gn_6_54900 Lactuca sativa HOM05D004311 ORTHO05D005145 2.4e-74 283.9 401 46.1
Migut.G01038 Erythranthe guttata HOM05D004311 ORTHO05D005145 1.2e-73 281.6 393 44.3
Nitab4.5_0000526g0040 Nicotiana tabacum HOM05D004311 ORTHO05D005145 1.5e-73 281.2 300 52.0
SalBow3G3821 Salvia bowleyana HOM05D004311 ORTHO05D005145 2.0e-73 280.8 399 45.1
HanXRQChr07g0186701 Helianthus annuus HOM05D004311 ORTHO05D005145 4.9e-72 276.2 407 43.2
ClCG07G015850 Citrullus lanatus HOM05D004311 ORTHO05D005145 6.4e-72 275.8 291 52.6
Dinv22688 Davidia involucrata HOM05D004311 ORTHO05D005145 8.4e-72 275.4 340 47.9
Sabra17G0023400 Salix brachista HOM05D004311 ORTHO05D005145 8.4e-72 275.4 340 47.4
Actinidia33018 Actinidia chinensis HOM05D004311 ORTHO05D005145 1.3e-69 268.1 306 50.3
Aqoxy5G04052 Aquilegia oxysepala HOM05D004311 ORTHO05D005145 1.7e-69 267.7 449 39.4
unitig_8.g3035 Utricularia gibba HOM05D004311 ORTHO05D005145 5.1e-69 266.2 397 43.6
DCAR_028443 Daucus carota HOM05D004311 ORTHO05D005145 4.3e-68 263.1 437 40.3
CDE09G0340 Ceratophyllum demersum HOM05D004311 ORTHO05D005145 6.2e-67 259.2 408 39.5
Prupe.1G189100 Prunus persica HOM05D004311 ORTHO05D005145 1.4e-66 258.1 263 55.5
HPP92_009171 Vanilla planifolia HOM05D004311 ORTHO05D005145 1.4e-66 258.1 472 36.0
CDE02G0781 Ceratophyllum demersum HOM05D004311 ORTHO05D005145 4.0e-66 256.5 396 39.6
Aa31LG2G1780 Aethionema arabicum HOM05D004311 ORTHO05D005145 5.8e-65 252.7 406 40.4
FAN22G0235 Fragaria x ananassa HOM05D004311 ORTHO05D005820 2.1e-62 244.2 262 52.7
BcaNung03232 Brassica carinata HOM05D004311 ORTHO05D005145 1.3e-61 241.5 394 39.3
Carub.0004s2496 Capsella rubella HOM05D004311 ORTHO05D005145 1.3e-61 241.5 399 38.8
Nitab4.5_0004962g0030 Nicotiana tabacum HOM05D004311 ORTHO05D005145 5.1e-61 239.6 419 37.2
SHI06503 Sapria himalayana HOM05D004311 ORTHO05D005145 1.5e-60 238.0 303 47.5
Sp4g24640 Schrenkiella parvula HOM05D004311 ORTHO05D005145 1.3e-59 235.0 399 37.3
BcaC02g07234 Brassica carinata HOM05D004311 ORTHO05D005145 2.8e-59 233.8 398 37.9
PSO675G5961 Papaver somniferum HOM05D004311 ORTHO05D005145 3.6e-59 233.4 439 35.5
C04p69770 Brassica napus HOM05D004311 ORTHO05D005145 1.1e-58 231.9 398 37.4
CARHR055450 Cardamine hirsuta HOM05D004311 ORTHO05D005145 2.4e-58 230.7 403 38.5
BraA05t19299Z Brassica rapa HOM05D004311 ORTHO05D005145 3.1e-58 230.3 393 38.4
BcaC02g12437 Brassica carinata HOM05D004311 ORTHO05D005145 2.0e-57 227.6 399 38.3
BolC4t22005H Brassica oleracea HOM05D004311 ORTHO05D005145 9.9e-57 225.3 422 37.2
A05p03080 Brassica napus HOM05D004311 ORTHO05D005145 1.3e-56 224.9 393 38.2
C04p03710 Brassica napus HOM05D004311 ORTHO05D005145 1.7e-56 224.6 422 37.2
PSO017G7323 Papaver somniferum HOM05D004311 ORTHO05D005145 2.4e-55 220.7 506 33.4
AT1G54380 Arabidopsis thaliana HOM05D004311 ORTHO05D005145 7.1e-55 219.2 401 37.7
Os11g0293300 Oryza sativa ssp. japonica HOM05D004311 ORTHO05D005145 2.7e-54 217.2 299 43.8
ATR0743G139 Amborella trichopoda HOM05D004311 ORTHO05D005145 3.0e-53 213.8 438 34.7
Zm00001eb248350 Zea mays HOM05D004311 ORTHO05D005145 8.7e-53 212.2 420 37.1
TWI60G0507 Tripterygium wilfordii HOM05D004311 ORTHO05D005145 1.9e-52 211.1 286 45.1
SEGI_09077 Sequoiadendron giganteum HOM05D004311 ORTHO05D005145 7.6e-49 199.1 306 37.9
Cpa.g.sc73.18 Carica papaya HOM05D004311 ORTHO05D005145 3.8e-48 196.8 236 47.9
Oeu007717.1 Olea europaea HOM05D004311 ORTHO05D005145 8.4e-48 195.7 217 49.8
Lalb_Chr02g0144311 Lupinus albus HOM05D004311 ORTHO05D005145 2.5e-44 184.1 273 42.5
SMO351G0426 Selaginella moellendorffii HOM05D004311 ORTHO05D005145 7.6e-41 172.6 293 36.9
Pp3c18_5230 Physcomitrium patens HOM05D004311 ORTHO05D005145 1.1e-39 168.7 352 33.5
SMO273G0052 Selaginella moellendorffii HOM05D004311 ORTHO05D005145 9.3e-39 165.6 290 37.2
AagrBONN_evm.TU.Sc2ySwM_228.1282 Anthoceros agrestis HOM05D004311 ORTHO05D005145 1.5e-36 158.3 532 28.8
CBR_g48670 Chara braunii HOM05D004311 ORTHO05D005145 7.4e-36 156.0 376 31.4
Duzib151G0942 Durio zibethinus HOM05D004311 ORTHO05D005145 2.6e-33 147.5 210 44.8
Prupe.1G188800 Prunus persica HOM05D004311 ORTHO05D005145 1.1e-31 142.1 172 50.6
Haze_00722 Corylus avellana HOM05D001997 ORTHO05D004620 7.2e-31 139.4 156 53.8
SMO174G0256 Selaginella moellendorffii HOM05D004311 ORTHO05D005145 1.6e-30 138.3 287 32.4
BcaB06g29252 Brassica carinata HOM05D004311 ORTHO05D005145 5.1e-29 133.3 395 28.9
Mapoly0064s0042 Marchantia polymorpha HOM05D004311 ORTHO05D005145 1.5e-28 131.7 112 58.9
BcaNung05216 Brassica carinata HOM05D004311 ORTHO05D005145 4.3e-28 130.2 389 29.6
Thhalv10017985m.g Eutrema salsugineum HOM05D004311 ORTHO05D005145 6.3e-27 126.3 221 37.6
TWI60G1520 Tripterygium wilfordii HOM05D004311 ORTHO05D005145 2.2e-24 117.9 117 53.8
Nitab4.5_0001049g0080 Nicotiana tabacum HOM05D004311 ORTHO05D005145 1.1e-23 115.5 165 41.8
MCO03G002 Micromonas commoda HOM05D004311 ORTHO05D005145 1.9e-15 88.2 277 29.6
BcaNung00544 Brassica carinata HOM05D004311 ORTHO05D005145 4.4e-12 77.0 89 43.8
CANSAT78G0609 Cannabis sativa HOM05D004311 ORTHO05D005145 1.8e-10 71.6 77 50.6
CARHR137590 Cardamine hirsuta HOM05D004311 ORTHO05D005145 2.0e-09 68.2 48 68.8
SGA_v2.0_scaffold290G47298 Striga asiatica HOM05D002786 ORTHO05D003493 3.5e-09 67.4 59 57.6
CANSAT01G2758 Cannabis sativa HOM05D004311 ORTHO05D005145 7.7e-09 66.2 77 48.1
RcHm_v2.0_Chr4g0407521 Rosa chinensis HOM05D004311 ORTHO05D005145 1.1e-07 62.4 74 50.0
BolC4t28477H Brassica oleracea HOM05D004311 ORTHO05D005145 5.5e-07 60.1 142 31.7
Cre09.g405650 Chlamydomonas reinhardtii HOM05D004311 ORTHO05D005145 7.2e-07 59.7 63 49.2
TAR362G0891 Trochodendron aralioides HOM05D015611 ORTHO05D005145 3.6e-06 57.4 59 42.4
TAR374G0693 Trochodendron aralioides HOM05D015611 ORTHO05D005145 8.0e-06 56.2 65 44.6


User provided reference genes

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