Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT11G1641 Cannabis sativa HOM05D004255 ORTHO05D004815 1.4e-30 137.5 66 100.0
CANSAT21G1589 Cannabis sativa HOM05D004255 ORTHO05D004815 1.2e-29 134.4 65 100.0
CANSAT80G1593 Cannabis sativa HOM05D004255 ORTHO05D004815 3.7e-28 129.4 64 98.4
FvH4_6g16190 Fragaria vesca HOM05D004255 ORTHO05D004815 3.6e-15 86.3 64 67.2
FAN14G1284 Fragaria x ananassa HOM05D004255 ORTHO05D004815 3.6e-15 86.3 64 67.2
FAN09G2699 Fragaria x ananassa HOM05D004255 ORTHO05D004815 1.1e-14 84.7 64 67.2
FAN05G2535 Fragaria x ananassa HOM05D004255 ORTHO05D004815 3.1e-14 83.2 64 65.6
RcHm_v2.0_Chr3g0470041 Rosa chinensis HOM05D004255 ORTHO05D004815 3.1e-14 83.2 66 62.1
QL07p044001 Quercus lobata HOM05D004255 ORTHO05D004815 5.2e-14 82.4 64 57.8
Cfa017586 Carpinus fangiana HOM05D004255 ORTHO05D004815 2.0e-13 80.5 64 59.4
Ciclev10011284m.g Citrus clementina HOM05D004255 ORTHO05D004815 2.6e-13 80.1 64 53.1
ClCG10G020210 Citrullus lanatus HOM05D004255 ORTHO05D004815 4.4e-13 79.3 59 61.0
Sed0023037 Sechium edule HOM05D004255 ORTHO05D004815 5.8e-13 79.0 53 67.9
Haze_22852 Corylus avellana HOM05D000010 ORTHO05D000302 1.3e-12 77.8 64 57.8
MELO3C009348.2 Cucumis melo HOM05D004255 ORTHO05D004815 1.7e-12 77.4 59 57.6
CiPaw.09G173800 Carya illinoinensis HOM05D004255 ORTHO05D004815 4.9e-12 75.9 65 55.4
Atru.chr8.1831 Acer truncatum HOM05D004255 ORTHO05D004815 1.4e-11 74.3 64 53.1
CsaV3_3G035890 Cucumis sativus L. HOM05D004255 ORTHO05D004815 1.9e-11 73.9 59 54.2
Eucgr.K03591 Eucalyptus grandis HOM05D004255 ORTHO05D004815 7.1e-11 72.0 53 58.5
Ca_11878_v3 Cicer arietinum L. HOM05D004255 ORTHO05D004815 4.6e-10 69.3 61 54.1
Medtr1g045880 Medicago truncatula HOM05D004255 ORTHO05D004815 7.8e-10 68.6 62 51.6
THA.LOC104816036 Tarenaya hassleriana HOM05D004255 ORTHO05D004815 7.8e-10 68.6 58 56.9
CARHR004520 Cardamine hirsuta HOM05D004255 ORTHO05D004815 1.3e-09 67.8 65 52.3
Lj4g0021155 Lotus japonicus HOM05D004255 ORTHO05D004815 1.7e-09 67.4 64 53.1
Phvul.007G232500 Phaseolus vulgaris HOM05D004255 ORTHO05D004815 1.7e-09 67.4 55 58.2
TPR.G23963 Trifolium pratense HOM05D004255 ORTHO05D004815 2.3e-09 67.0 61 54.1
arahy.Tifrunner.gnm1.ann1.RBUQ0I Arachis hypogaea HOM05D004255 ORTHO05D004815 8.7e-09 65.1 56 58.9
Glyma.19G000100 Glycine max HOM05D004255 ORTHO05D004815 8.7e-09 65.1 64 50.0
Carub.0004s1396 Capsella rubella HOM05D004255 ORTHO05D004815 1.9e-08 63.9 55 54.5
Manes.13G072800 Manihot esculenta HOM05D004255 ORTHO05D004815 1.9e-08 63.9 64 50.0
AT2G32630 Arabidopsis thaliana HOM05D004255 ORTHO05D004815 2.5e-08 63.5 55 54.5
VMungo0720G0391 Vigna mungo HOM05D004255 ORTHO05D004815 3.3e-08 63.2 50 60.0
AL4G28030 Arabidopsis lyrata HOM05D004255 ORTHO05D004815 4.3e-08 62.8 55 54.5
CSS0008426 Camellia sinensis var. sinensis HOM05D004255 ORTHO05D004815 4.3e-08 62.8 54 51.9
AUR62041993 Chenopodium quinoa HOM05D004255 ORTHO05D004815 7.3e-08 62.0 65 46.2
TAR633G0618 Trochodendron aralioides HOM05D004255 ORTHO05D004815 7.3e-08 62.0 52 55.8
TAR633G1109 Trochodendron aralioides HOM05D004255 ORTHO05D004815 7.3e-08 62.0 52 55.8
SHI12481 Sapria himalayana HOM05D004255 ORTHO05D004815 9.6e-08 61.6 63 36.5
Sp4g14950 Schrenkiella parvula HOM05D004255 ORTHO05D004815 9.6e-08 61.6 55 54.5
Thecc.05G064100 Theobroma cacao HOM05D004255 ORTHO05D004815 9.6e-08 61.6 50 58.0
Cc06_g04130 Coffea canephora HOM05D004255 ORTHO05D004815 1.3e-07 61.2 63 44.4
Dinv37304 Davidia involucrata HOM05D004255 ORTHO05D004815 1.3e-07 61.2 54 50.0
Potri.003G008900 Populus trichocarpa HOM05D004255 ORTHO05D004815 1.3e-07 61.2 65 43.1
Atru.chr12.340 Acer truncatum HOM05D004255 ORTHO05D004815 1.6e-07 60.8 52 53.8
DCAR_014992 Daucus carota HOM05D004255 ORTHO05D004815 1.6e-07 60.8 54 48.1
PGR083G1347 Punica granatum HOM05D004255 ORTHO05D004815 1.6e-07 60.8 49 51.0
TAR633G2036 Trochodendron aralioides HOM05D004255 ORTHO05D004815 1.6e-07 60.8 52 53.8
Rhsim07G0183700 Rhododendron simsii HOM05D004255 ORTHO05D004815 2.8e-07 60.1 63 46.0
Atru.chr12.311 Acer truncatum HOM05D004255 ORTHO05D004815 4.8e-07 59.3 52 51.9
Aa31LG5G4720 Aethionema arabicum HOM05D004255 ORTHO05D004815 4.8e-07 59.3 55 52.7
Thhalv10017786m.g Eutrema salsugineum HOM05D004255 ORTHO05D004815 4.8e-07 59.3 55 52.7
Oeu047722.1 Olea europaea HOM05D004255 ORTHO05D004815 6.2e-07 58.9 63 41.3
Rhsim02G0187700 Rhododendron simsii HOM05D004255 ORTHO05D004815 6.2e-07 58.9 54 50.0
Rhsim04G0144500 Rhododendron simsii HOM05D004255 ORTHO05D004815 6.2e-07 58.9 54 50.0
AUR62040455 Chenopodium quinoa HOM05D004255 ORTHO05D004815 8.1e-07 58.5 65 44.6
BcaB01g03971 Brassica carinata HOM05D004255 ORTHO05D004815 1.8e-06 57.4 55 49.1
Duzib106G1941 Durio zibethinus HOM05D004255 ORTHO05D004815 1.8e-06 57.4 50 52.0
BraA03t11081Z Brassica rapa HOM05D004255 ORTHO05D004815 2.4e-06 57.0 55 49.1
C03p21260 Brassica napus HOM05D004255 ORTHO05D004815 4.0e-06 56.2 55 47.3
FAN02G2222 Fragaria x ananassa HOM05D004255 ORTHO05D004815 4.0e-06 56.2 33 78.8
BcaC01g05901 Brassica carinata HOM05D004255 ORTHO05D004815 5.3e-06 55.8 55 47.3
A03p18210 Brassica napus HOM05D004255 ORTHO05D004815 5.3e-06 55.8 55 47.3
BolC3t14507H Brassica oleracea HOM05D004255 ORTHO05D004815 5.3e-06 55.8 55 47.3
Nitab4.5_0001297g0100 Nicotiana tabacum HOM05D004255 ORTHO05D004815 5.3e-06 55.8 63 42.9
CARHR126490 Cardamine hirsuta HOM05D004255 ORTHO05D004815 9.0e-06 55.1 55 49.1
GSVIVG01025719001 Vitis vinifera HOM05D004255 ORTHO05D004815 9.0e-06 55.1 53 45.3


User provided reference genes

Program Settings