Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT11G1632 Cannabis sativa HOM05D005237 ORTHO05D006189 1.1e-98 363.2 175 100.0
CiPaw.03G250600 Carya illinoinensis HOM05D005237 ORTHO05D006189 1.2e-89 333.2 175 90.3
MD15G1163100 Malus domestica HOM05D005237 ORTHO05D006189 1.0e-88 330.1 174 89.1
Haze_25466 Corylus avellana HOM05D005237 ORTHO05D006189 8.7e-88 327.0 175 89.1
Haze_25470 Corylus avellana HOM05D005237 ORTHO05D006189 8.7e-88 327.0 175 89.1
QL02p090325 Quercus lobata HOM05D005237 ORTHO05D006189 1.1e-87 326.6 174 89.1
Rhsim01G0059600 Rhododendron simsii HOM05D005237 ORTHO05D006189 1.5e-87 326.2 175 88.6
GSVIVG01012837001 Vitis vinifera HOM05D005237 ORTHO05D006189 1.9e-87 325.9 175 89.1
Actinidia07336 Actinidia chinensis HOM05D005237 ORTHO05D006189 2.5e-87 325.5 175 89.7
Prupe.7G251500 Prunus persica HOM05D005237 ORTHO05D006189 2.5e-87 325.5 174 87.9
Duzib150G0783 Durio zibethinus HOM05D005237 ORTHO05D006189 4.3e-87 324.7 175 88.6
Oeu000523.1 Olea europaea HOM05D005237 ORTHO05D006189 4.3e-87 324.7 175 86.9
MD02G1020300 Malus domestica HOM05D005237 ORTHO05D006189 7.4e-87 323.9 174 87.4
vmacro07739 Vaccinium macrocarpon HOM05D005237 ORTHO05D006189 7.4e-87 323.9 174 89.1
Ciclev10009685m.g Citrus clementina HOM05D005237 ORTHO05D006189 1.3e-86 323.2 175 89.1
FvH4_3g33280 Fragaria vesca HOM05D005237 ORTHO05D006189 2.8e-86 322.0 174 87.9
FAN11G2421 Fragaria x ananassa HOM05D005237 ORTHO05D006189 2.8e-86 322.0 174 87.9
Eucgr.C04376 Eucalyptus grandis HOM05D005237 ORTHO05D006189 3.7e-86 321.6 175 86.3
Glyma.17G108800 Glycine max HOM05D005237 ORTHO05D006189 6.3e-86 320.9 175 86.9
TWI32G1192 Tripterygium wilfordii HOM05D005237 ORTHO05D006189 6.3e-86 320.9 175 86.9
FAN21G0596 Fragaria x ananassa HOM05D005237 ORTHO05D006189 1.8e-85 319.3 174 87.4
Lj7A437T44 Lonicera japonica HOM05D005237 ORTHO05D006189 1.8e-85 319.3 173 87.9
Lalb_Chr12g0198311 Lupinus albus HOM05D005237 ORTHO05D006189 2.4e-85 318.9 175 85.7
SGA_v2.0_scaffold37G14721 Striga asiatica HOM05D005237 ORTHO05D006189 2.4e-85 318.9 175 86.3
CsaV3_2G003270 Cucumis sativus L. HOM05D005237 ORTHO05D006189 3.1e-85 318.5 175 85.7
Medtr4g115900 Medicago truncatula HOM05D005237 ORTHO05D006189 4.1e-85 318.2 172 87.2
ClCG11G003410 Citrullus lanatus HOM05D005237 ORTHO05D006189 5.3e-85 317.8 175 85.7
Dinv41456 Davidia involucrata HOM05D005237 ORTHO05D006189 5.3e-85 317.8 175 86.3
Glyma.13G162500 Glycine max HOM05D005237 ORTHO05D006189 5.3e-85 317.8 175 86.3
Lj4g0017742 Lotus japonicus HOM05D005237 ORTHO05D006189 5.3e-85 317.8 175 86.9
Gohir.A08G089300 Gossypium hirsutum HOM05D005237 ORTHO05D006189 9.0e-85 317.0 175 86.3
Nitab4.5_0002267g0030 Nicotiana tabacum HOM05D005237 ORTHO05D006189 9.0e-85 317.0 175 84.6
Lalb_Chr13g0301391 Lupinus albus HOM05D005237 ORTHO05D006189 1.2e-84 316.6 175 85.7
Psat0s3428g0040 Pisum sativum HOM05D005237 ORTHO05D006189 2.6e-84 315.5 172 87.2
unitig_748.g7174 Utricularia gibba HOM05D005237 ORTHO05D006189 2.6e-84 315.5 174 85.1
Migut.K00410 Erythranthe guttata HOM05D005237 ORTHO05D006189 3.4e-84 315.1 172 86.0
Cpa.g.sc277.15 Carica papaya HOM05D005237 ORTHO05D006189 4.5e-84 314.7 175 85.7
arahy.Tifrunner.gnm1.ann1.E2H6AC Arachis hypogaea HOM05D005237 ORTHO05D006189 5.9e-84 314.3 175 85.1
Sed0005481 Sechium edule HOM05D005237 ORTHO05D006189 5.9e-84 314.3 175 85.1
Peaxi162Scf00088g00918 Petunia axillaris HOM05D005237 ORTHO05D006189 7.7e-84 313.9 174 85.6
MSTRG.26338 Avicennia marina HOM05D005237 ORTHO05D006189 1.0e-83 313.5 175 84.6
EL10Ac8g18779 Beta vulgaris HOM05D005237 ORTHO05D006189 1.0e-83 313.5 172 86.0
Atru.chr7.1980 Acer truncatum HOM05D005237 ORTHO05D006189 1.3e-83 313.2 174 87.4
Gorai.004G108300 Gossypium raimondii HOM05D005237 ORTHO05D006189 1.7e-83 312.8 174 86.2
Phvul.003G171200 Phaseolus vulgaris HOM05D005237 ORTHO05D006189 2.2e-83 312.4 175 84.6
RcHm_v2.0_Chr5g0060671 Rosa chinensis HOM05D005237 ORTHO05D006189 2.2e-83 312.4 174 85.1
SalBow1G1295 Salvia bowleyana HOM05D005237 ORTHO05D006189 3.8e-83 311.6 175 85.1
AT1G60430 Arabidopsis thaliana HOM05D005237 ORTHO05D006189 5.0e-83 311.2 173 84.4
CDE07G1573 Ceratophyllum demersum HOM05D005237 ORTHO05D006189 5.0e-83 311.2 174 84.5
Hma1.2p1_0343F.1_g130850 Hydrangea macrophylla HOM05D005237 ORTHO05D006189 5.0e-83 311.2 173 83.8
PGR102G2022 Punica granatum HOM05D005237 ORTHO05D006189 5.0e-83 311.2 172 86.0
Sed0006539 Sechium edule HOM05D005237 ORTHO05D006189 5.0e-83 311.2 175 84.6
DCAR_009333 Daucus carota HOM05D005237 ORTHO05D006189 6.5e-83 310.8 171 86.5
Sabra18G0104800 Salix brachista HOM05D005237 ORTHO05D006189 8.5e-83 310.5 172 86.0
Ah.09g224420 Amaranthus hybridus HOM05D005237 ORTHO05D006189 1.1e-82 310.1 172 85.5
HanXRQChr06g0180531 Helianthus annuus HOM05D005237 ORTHO05D006189 1.1e-82 310.1 172 84.9
Potri.018G123100 Populus trichocarpa HOM05D005237 ORTHO05D006189 1.1e-82 310.1 172 85.5
Aa31LG2G10030 Aethionema arabicum HOM05D005237 ORTHO05D006189 1.9e-82 309.3 173 83.2
CiPaw.04G176700 Carya illinoinensis HOM05D005237 ORTHO05D006189 1.9e-82 309.3 175 84.6
Manes.14G117900 Manihot esculenta HOM05D005237 ORTHO05D006189 1.9e-82 309.3 172 85.5
Cc07_g18400 Coffea canephora HOM05D005237 ORTHO05D006189 2.5e-82 308.9 175 85.1
Hund09300 Selenicereus undatus HOM05D005237 ORTHO05D006189 2.5e-82 308.9 172 84.9
Nn8g40617 Nelumbo nucifera HOM05D005237 ORTHO05D006189 3.2e-82 308.5 172 83.7
Aqoxy7G00028 Aquilegia oxysepala HOM05D005237 ORTHO05D006189 4.2e-82 308.1 175 84.0
Carub.0002s0491 Capsella rubella HOM05D005237 ORTHO05D006189 4.2e-82 308.1 173 82.7
Thhalv10023668m.g Eutrema salsugineum HOM05D005237 ORTHO05D006189 4.2e-82 308.1 172 83.1
CARHR052620 Cardamine hirsuta HOM05D005237 ORTHO05D006189 5.5e-82 307.8 173 82.7
PGSC0003DMG400030712 Solanum tuberosum HOM05D005237 ORTHO05D006189 5.5e-82 307.8 175 82.3
ECA236G1442 Erigeron canadensis HOM05D005237 ORTHO05D006189 7.2e-82 307.4 172 85.5
Lsat_1_v5_gn_8_61340 Lactuca sativa HOM05D005237 ORTHO05D006189 7.2e-82 307.4 172 83.1
AL2G16270 Arabidopsis lyrata HOM05D005237 ORTHO05D006189 9.4e-82 307.0 173 82.7
Solyc07g007630.3 Solanum lycopersicum HOM05D005237 ORTHO05D006189 9.4e-82 307.0 175 82.3
Sp2g04330 Schrenkiella parvula HOM05D005237 ORTHO05D006189 1.2e-81 306.6 172 82.6
Sopen07g003620 Solanum pennellii HOM05D005237 ORTHO05D006189 1.2e-81 306.6 175 81.7
HPP92_021894 Vanilla planifolia HOM05D005237 ORTHO05D006189 2.1e-81 305.8 173 84.4
Nitab4.5_0000704g0070 Nicotiana tabacum HOM05D005237 ORTHO05D006189 4.6e-81 304.7 190 77.4
Sc18g0000220 Simmondsia chinensis HOM05D005237 ORTHO05D006189 6.1e-81 304.3 172 83.7
Zm00001eb238940 Zea mays HOM05D005237 ORTHO05D006189 6.1e-81 304.3 173 81.5
Zm00001eb238960 Zea mays HOM05D005237 ORTHO05D006189 6.1e-81 304.3 172 82.0
Zm00001eb238970 Zea mays HOM05D005237 ORTHO05D006189 6.1e-81 304.3 172 82.0
Zm00001eb438640 Zea mays HOM05D005237 ORTHO05D006189 6.1e-81 304.3 172 82.0
Zm00001eb438650 Zea mays HOM05D005237 ORTHO05D006189 6.1e-81 304.3 172 82.0
BcaB07g31213 Brassica carinata HOM05D005237 ORTHO05D006189 1.0e-80 303.5 173 80.9
BcaC04g22225 Brassica carinata HOM05D005237 ORTHO05D006189 1.0e-80 303.5 173 80.9
THA.LOC104815299 Tarenaya hassleriana HOM05D005237 ORTHO05D006189 1.0e-80 303.5 171 82.5
C09p21860 Brassica napus HOM05D002152 ORTHO05D006189 3.9e-80 301.6 172 80.8
BraA09t37380Z Brassica rapa HOM05D002152 ORTHO05D006189 3.9e-80 301.6 172 80.8
A09p17560 Brassica napus HOM05D002152 ORTHO05D006189 8.8e-80 300.4 172 80.2
Zm00001eb150940 Zea mays HOM05D005237 ORTHO05D006189 8.8e-80 300.4 172 81.4
Potri.006G063400 Populus trichocarpa HOM05D005237 ORTHO05D006189 2.0e-79 299.3 172 83.7
CSS0004544 Camellia sinensis var. sinensis HOM05D005237 ORTHO05D006189 4.3e-79 298.1 226 68.1
SEGI_28631 Sequoiadendron giganteum HOM05D005237 ORTHO05D006189 1.3e-78 296.6 172 80.2
MBI14_g10734_MAGBIO Magnolia biondii HOM05D005237 ORTHO05D006189 6.3e-78 294.3 181 80.7
SHI03217 Sapria himalayana HOM05D005237 ORTHO05D006189 3.1e-77 292.0 165 83.6
Dinv36460 Davidia involucrata HOM05D005237 ORTHO05D006189 1.3e-75 286.6 159 86.2
Gohir.D05G014800 Gossypium hirsutum HOM05D005237 ORTHO05D006189 5.0e-75 284.6 171 77.2
Gohir.A05G013700 Gossypium hirsutum HOM05D005237 ORTHO05D006189 1.1e-74 283.5 171 76.6
Gorai.009G014900 Gossypium raimondii HOM05D005237 ORTHO05D006189 1.6e-73 279.6 173 76.3
Gohir.D08G100500 Gossypium hirsutum HOM05D005237 ORTHO05D006189 3.6e-73 278.5 158 85.4
Pp3c10_12220 Physcomitrium patens HOM05D005237 ORTHO05D006189 2.2e-70 269.2 174 70.1
Pp3c3_23320 Physcomitrium patens HOM05D005237 ORTHO05D006189 4.8e-70 268.1 174 69.0
CDE04G0420 Ceratophyllum demersum HOM05D005237 ORTHO05D006189 5.3e-69 264.6 151 84.1
ATR0580G166 Amborella trichopoda HOM05D005237 ORTHO05D006189 1.5e-68 263.1 149 84.6
SMO356G0108 Selaginella moellendorffii HOM05D005237 ORTHO05D006189 2.0e-68 262.7 174 69.5
Mapoly0002s0013 Marchantia polymorpha HOM05D005237 ORTHO05D006189 3.8e-67 258.5 176 68.8
MELO3C004473.2 Cucumis melo HOM05D005237 ORTHO05D006189 2.1e-65 252.7 138 88.4
BolC9t55091H Brassica oleracea HOM05D002152 ORTHO05D002737 1.0e-64 250.4 146 80.8
PSO675G7544 Papaver somniferum HOM05D005237 ORTHO05D006189 2.2e-62 242.7 136 86.0
Lsat_1_v5_gn_7_44340 Lactuca sativa HOM05D005237 ORTHO05D006189 4.5e-60 235.0 176 64.2
Zm00001eb238980 Zea mays HOM05D005237 ORTHO05D006189 1.7e-59 233.0 133 82.7
TPR.G39824 Trifolium pratense HOM05D005237 ORTHO05D006189 4.2e-58 228.4 127 84.3
COL.COLO4_15552 Corchorus olitorius HOM05D005237 ORTHO05D006189 1.2e-57 226.9 130 82.3
TAR626G0602 Trochodendron aralioides HOM05D005237 ORTHO05D006189 2.1e-57 226.1 134 81.3
VMungo1215G1009 Vigna mungo HOM05D005237 ORTHO05D006189 2.1e-57 226.1 182 63.7
Thecc.09G135400 Theobroma cacao HOM05D005237 ORTHO05D006189 4.7e-57 224.9 172 66.9
Os02g0235000 Oryza sativa ssp. japonica HOM05D005237 ORTHO05D006189 6.1e-57 224.6 127 81.1
AUR62011203 Chenopodium quinoa HOM05D005237 ORTHO05D006189 1.0e-56 223.8 127 84.3
AUR62013284 Chenopodium quinoa HOM05D005237 ORTHO05D006189 1.0e-56 223.8 127 84.3
TWI38G2392 Tripterygium wilfordii HOM05D005237 ORTHO05D006189 1.0e-56 223.8 128 82.0
CAN.G1382.4 Capsicum annuum HOM05D005237 ORTHO05D006189 2.3e-56 222.6 127 81.1
Duzib187G1805 Durio zibethinus HOM05D005237 ORTHO05D006189 2.0e-55 219.5 130 80.0
MD10G1159100 Malus domestica HOM05D005237 ORTHO05D006189 3.7e-54 215.3 130 77.7
FAN25G0883 Fragaria x ananassa HOM05D005237 ORTHO05D006189 3.1e-53 212.2 163 66.9
VMungo0251G3112 Vigna mungo HOM05D005237 ORTHO05D006189 4.7e-49 198.4 147 68.7
Sopen02g003910 Solanum pennellii HOM05D005237 ORTHO05D006189 1.5e-47 193.4 132 69.7
Peaxi162Scf00113g00061 Petunia axillaris HOM05D005237 ORTHO05D006189 1.1e-45 187.2 128 71.9
Solyc02g014540.3 Solanum lycopersicum HOM05D005237 ORTHO05D006189 2.7e-44 182.6 126 68.3
Ca_21648_v3 Cicer arietinum L. HOM05D005237 ORTHO05D006189 1.1e-42 177.2 131 71.0
FAN16G0279 Fragaria x ananassa HOM05D005237 ORTHO05D006189 1.2e-39 167.2 92 87.0
FAN21G3302 Fragaria x ananassa HOM05D005237 ORTHO05D006189 8.3e-38 161.0 91 85.7
FAN17G0540 Fragaria x ananassa HOM05D005237 ORTHO05D006189 4.6e-36 155.2 101 80.2
FAN28G2985 Fragaria x ananassa HOM05D005237 ORTHO05D006189 4.6e-36 155.2 94 80.9
FAN02G0796 Fragaria x ananassa HOM05D005237 ORTHO05D006189 1.0e-35 154.1 104 73.1
FAN17G0595 Fragaria x ananassa HOM05D005237 ORTHO05D006189 1.3e-35 153.7 95 81.1
Sabra06G0046100 Salix brachista HOM05D005237 ORTHO05D006189 2.9e-35 152.5 92 80.4
FAN20G0460 Fragaria x ananassa HOM05D005237 ORTHO05D006189 1.5e-34 150.2 93 77.4
Eucgr.I02126 Eucalyptus grandis HOM05D005237 ORTHO05D006189 8.0e-33 144.4 80 80.0
PGSC0003DMG400003270 Solanum tuberosum HOM05D005237 ORTHO05D006189 1.4e-32 143.7 88 76.1
Medtr0320s0040 Medicago truncatula HOM05D005237 ORTHO05D006189 7.5e-31 137.9 87 75.9
FAN20G1904 Fragaria x ananassa HOM05D005237 ORTHO05D006189 2.3e-27 126.3 77 81.8
Duzib168G1377 Durio zibethinus HOM05D005237 ORTHO05D006189 3.0e-27 125.9 73 83.6
Eucgr.L01822 Eucalyptus grandis HOM05D005237 ORTHO05D006189 4.3e-26 122.1 80 72.5
Aa31LG9G5450 Aethionema arabicum HOM05D005237 ORTHO05D006189 7.3e-26 121.3 99 60.6
Zm00001eb302220 Zea mays HOM05D005237 ORTHO05D006189 3.6e-25 119.0 67 76.1
Cre09.g397950 Chlamydomonas reinhardtii HOM05D005237 ORTHO05D006189 5.2e-24 115.2 192 33.3
TAR625G1190 Trochodendron aralioides HOM05D005237 ORTHO05D006189 6.0e-20 101.7 90 58.9
Cc06_g07800 Coffea canephora HOM05D005237 ORTHO05D006189 6.2e-17 91.7 57 71.9
Lsat_1_v5_gn_2_45981 Lactuca sativa HOM05D005237 ORTHO05D003224 7.3e-10 68.2 37 70.3


User provided reference genes

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