Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT11G1621 Cannabis sativa HOM05D004902 ORTHO05D006603 0.0e+00 1169.1 587 100.0
CiPaw.11G191900 Carya illinoinensis HOM05D004902 ORTHO05D006603 3.3e-288 994.6 597 84.8
QL08p009339 Quercus lobata HOM05D004902 ORTHO05D006603 4.3e-288 994.2 593 84.8
TWI39G0824 Tripterygium wilfordii HOM05D004902 ORTHO05D006603 4.7e-287 990.7 586 85.5
Prupe.4G217200 Prunus persica HOM05D004902 ORTHO05D006603 2.0e-285 985.3 587 85.0
Cfa020314 Carpinus fangiana HOM05D004902 ORTHO05D006603 4.4e-285 984.2 592 84.3
MD03G1198000 Malus domestica HOM05D004902 ORTHO05D006603 9.8e-285 983.0 587 84.8
ClCG09G010930 Citrullus lanatus HOM05D004902 ORTHO05D006603 8.3e-284 979.9 601 83.4
Gohir.A11G067600 Gossypium hirsutum HOM05D004902 ORTHO05D006603 2.4e-283 978.4 585 85.0
MELO3C013152.2 Cucumis melo HOM05D004902 ORTHO05D006603 7.1e-283 976.9 597 83.6
Manes.03G132000 Manihot esculenta HOM05D004902 ORTHO05D006603 2.7e-282 974.9 585 84.4
Gohir.D11G071500 Gossypium hirsutum HOM05D004902 ORTHO05D006603 3.5e-282 974.5 585 84.4
Hma1.2p1_0036F.1_g023440 Hydrangea macrophylla HOM05D004902 ORTHO05D006603 6.0e-282 973.8 593 82.6
Phvul.006G046400 Phaseolus vulgaris HOM05D004902 ORTHO05D006603 1.7e-281 972.2 587 83.1
Dinv40776 Davidia involucrata HOM05D004902 ORTHO05D006603 2.3e-281 971.8 599 82.1
Ciclev10007818m.g Citrus clementina HOM05D004902 ORTHO05D006603 3.0e-281 971.5 583 84.2
Gorai.007G076800 Gossypium raimondii HOM05D004902 ORTHO05D006603 1.1e-280 969.5 589 83.5
TAR362G0117 Trochodendron aralioides HOM05D004902 ORTHO05D006603 1.9e-280 968.8 588 82.5
Potri.001G267400 Populus trichocarpa HOM05D004902 ORTHO05D006603 1.2e-279 966.1 589 82.9
Psat5g177120 Pisum sativum HOM05D004902 ORTHO05D006603 2.1e-279 965.3 587 82.5
Thecc.09G123200 Theobroma cacao HOM05D004902 ORTHO05D006603 8.1e-279 963.4 582 83.7
TPR.G33794 Trifolium pratense HOM05D004902 ORTHO05D006603 1.8e-278 962.2 549 85.6
Glyma.18G093200 Glycine max HOM05D004902 ORTHO05D006603 4.0e-278 961.1 587 82.3
GSVIVG01037683001 Vitis vinifera HOM05D004902 ORTHO05D006603 4.0e-278 961.1 560 85.5
Lj4g0024994 Lotus japonicus HOM05D004902 ORTHO05D006603 5.2e-278 960.7 547 86.8
Sed0009199 Sechium edule HOM05D004902 ORTHO05D006603 5.2e-278 960.7 597 82.6
Glyma.18G108300 Glycine max HOM05D004902 ORTHO05D006603 8.9e-278 959.9 588 82.0
CSS0007833 Camellia sinensis var. sinensis HOM05D004902 ORTHO05D006603 2.0e-277 958.7 560 84.8
Atru.chr2.3483 Acer truncatum HOM05D004902 ORTHO05D006603 4.4e-277 957.6 590 82.5
RcHm_v2.0_Chr5g0040671 Rosa chinensis HOM05D004902 ORTHO05D006603 5.8e-277 957.2 591 82.4
PGSC0003DMG400022211 Solanum tuberosum HOM05D004902 ORTHO05D006603 9.9e-277 956.4 589 81.8
Sopen07g033000 Solanum pennellii HOM05D004902 ORTHO05D006603 1.3e-276 956.1 589 81.8
Duzib264G0382 Durio zibethinus HOM05D004902 ORTHO05D006603 2.9e-276 954.9 589 82.7
arahy.Tifrunner.gnm1.ann1.67NMHM Arachis hypogaea HOM05D004902 ORTHO05D006603 3.7e-276 954.5 593 81.5
CSS0000094 Camellia sinensis var. sinensis HOM05D004902 ORTHO05D006603 3.7e-276 954.5 560 84.5
Lalb_Chr10g0107081 Lupinus albus HOM05D004902 ORTHO05D006603 4.9e-276 954.1 562 84.3
Potri.009G061700 Populus trichocarpa HOM05D004902 ORTHO05D006603 4.9e-276 954.1 589 81.3
Solyc07g064810.3 Solanum lycopersicum HOM05D004902 ORTHO05D006603 4.9e-276 954.1 589 81.8
Ca_14752_v3 Cicer arietinum L. HOM05D004902 ORTHO05D006603 6.4e-276 953.7 587 81.9
Medtr3g052850 Medicago truncatula HOM05D004902 ORTHO05D006603 6.4e-276 953.7 589 81.3
PGR083G1168 Punica granatum HOM05D004902 ORTHO05D006603 6.4e-276 953.7 589 81.7
Eucgr.F00742 Eucalyptus grandis HOM05D004902 ORTHO05D006603 1.1e-275 953.0 589 81.3
AL7G25950 Arabidopsis lyrata HOM05D004902 ORTHO05D006603 1.4e-275 952.6 589 81.0
Thhalv10024744m.g Eutrema salsugineum HOM05D004902 ORTHO05D006603 1.4e-275 952.6 577 82.1
THA.LOC104811618 Tarenaya hassleriana HOM05D004902 ORTHO05D006603 1.4e-275 952.6 588 80.4
HanXRQChr08g0233501 Helianthus annuus HOM05D004902 ORTHO05D006603 5.4e-275 950.7 557 84.2
Migut.M01740 Erythranthe guttata HOM05D004902 ORTHO05D006603 1.6e-274 949.1 588 81.3
CAN.G337.72 Capsicum annuum HOM05D004902 ORTHO05D006603 3.5e-274 948.0 589 81.8
CARHR234510 Cardamine hirsuta HOM05D004902 ORTHO05D006603 4.6e-274 947.6 590 80.5
SGA_v2.0_scaffold172G39008 Striga asiatica HOM05D004902 ORTHO05D006603 1.7e-273 945.7 589 81.2
arahy.Tifrunner.gnm1.ann1.E3581I Arachis hypogaea HOM05D004902 ORTHO05D006603 5.1e-273 944.1 610 79.3
Lj1A876G36 Lonicera japonica HOM05D004902 ORTHO05D006603 6.6e-273 943.7 593 80.4
Aa31LG3G11010 Aethionema arabicum HOM05D004902 ORTHO05D006603 1.5e-272 942.6 593 80.3
AT4G26900 Arabidopsis thaliana HOM05D004902 ORTHO05D006603 1.9e-272 942.2 589 80.1
HanXRQChr05g0159411 Helianthus annuus HOM05D004902 ORTHO05D006603 2.5e-272 941.8 557 83.1
MSTRG.12985 Avicennia marina HOM05D004902 ORTHO05D006603 4.3e-272 941.0 555 83.4
FAN18G4155 Fragaria x ananassa HOM05D004902 ORTHO05D006603 4.3e-272 941.0 596 81.4
Sp7g24850 Schrenkiella parvula HOM05D004902 ORTHO05D006603 4.3e-272 941.0 587 80.4
Actinidia10742 Actinidia chinensis HOM05D004902 ORTHO05D006603 5.6e-272 940.6 606 78.9
C01p23080 Brassica napus HOM05D004902 ORTHO05D006603 5.6e-272 940.6 585 80.5
Carub.0007s1395 Capsella rubella HOM05D004902 ORTHO05D006603 1.6e-271 939.1 587 80.4
FAN04G1963 Fragaria x ananassa HOM05D004902 ORTHO05D006603 2.1e-271 938.7 598 80.8
BcaB06g27301 Brassica carinata HOM05D004902 ORTHO05D006603 8.1e-271 936.8 583 80.4
BolC1t02242H Brassica oleracea HOM05D004902 ORTHO05D006603 3.1e-270 934.9 570 81.4
FAN13G3021 Fragaria x ananassa HOM05D004902 ORTHO05D006603 3.1e-270 934.9 610 79.5
Aqoxy5G00324 Aquilegia oxysepala HOM05D004902 ORTHO05D006603 5.2e-270 934.1 561 84.0
MSTRG.14441 Avicennia marina HOM05D004902 ORTHO05D006603 5.2e-270 934.1 579 80.5
Lsat_1_v5_gn_5_3021 Lactuca sativa HOM05D004902 ORTHO05D006603 5.2e-270 934.1 588 80.6
C04p45770 Brassica napus HOM05D004902 ORTHO05D006603 1.2e-269 932.9 583 80.3
BolC4t26162H Brassica oleracea HOM05D004902 ORTHO05D006603 4.4e-269 931.0 585 80.2
COL.COLO4_19537 Corchorus olitorius HOM05D004902 ORTHO05D006603 4.4e-269 931.0 588 80.8
Sc02g0003710 Simmondsia chinensis HOM05D004902 ORTHO05D006603 1.1e-267 926.4 541 84.3
A04p12110 Brassica napus HOM05D004902 ORTHO05D006603 3.2e-267 924.9 593 79.1
ECA246G3742 Erigeron canadensis HOM05D004902 ORTHO05D006603 9.3e-267 923.3 584 80.0
Oeu062577.2 Olea europaea HOM05D004902 ORTHO05D006603 1.2e-266 922.9 565 82.8
BcaNung03568 Brassica carinata HOM05D004902 ORTHO05D006603 2.3e-265 918.7 589 78.6
Hund26666 Selenicereus undatus HOM05D004902 ORTHO05D006603 3.9e-265 917.9 608 77.3
Haze_09705 Corylus avellana HOM05D004902 ORTHO05D006603 5.1e-265 917.5 592 79.7
CDE02G3624 Ceratophyllum demersum HOM05D004902 ORTHO05D006603 1.1e-264 916.4 587 78.7
ATR0736G184 Amborella trichopoda HOM05D004902 ORTHO05D006603 1.1e-262 909.8 588 79.4
Nn8g38868 Nelumbo nucifera HOM05D004902 ORTHO05D006603 2.4e-262 908.7 570 81.4
BraA04t16876Z Brassica rapa HOM05D004902 ORTHO05D006603 5.4e-259 897.5 621 75.8
EL10Ac1g01638 Beta vulgaris HOM05D004902 ORTHO05D006603 1.3e-255 886.3 593 75.7
Oeu013136.2 Olea europaea HOM05D004902 ORTHO05D006603 6.9e-254 880.6 628 73.7
Rhsim06G0219700 Rhododendron simsii HOM05D004902 ORTHO05D006603 6.9e-254 880.6 585 76.9
AUR62026758 Chenopodium quinoa HOM05D004902 ORTHO05D006603 3.4e-253 878.2 594 74.9
Sabra16G0163900 Salix brachista HOM05D004902 ORTHO05D006603 3.4e-253 878.2 654 71.4
Gorai.011G209600 Gossypium raimondii HOM05D004902 ORTHO05D006603 4.5e-253 877.9 587 77.2
FAN08G0007 Fragaria x ananassa HOM05D004902 ORTHO05D006603 2.2e-252 875.5 588 77.2
Gohir.D10G186800 Gossypium hirsutum HOM05D004902 ORTHO05D006603 3.2e-251 871.7 587 76.7
HPP92_013494 Vanilla planifolia HOM05D004902 ORTHO05D006603 1.6e-250 869.4 588 73.8
vmacro02220 Vaccinium macrocarpon HOM05D004902 ORTHO05D006603 3.0e-249 865.1 603 74.8
Os03g0256400 Oryza sativa ssp. japonica HOM05D004902 ORTHO05D006603 5.1e-249 864.4 541 77.3
HPP92_026047 Vanilla planifolia HOM05D004902 ORTHO05D006603 1.3e-247 859.8 582 74.1
PSO210G2842 Papaver somniferum HOM05D004902 ORTHO05D006603 3.7e-247 858.2 554 78.7
FvH4_5g29730 Fragaria vesca HOM05D004902 ORTHO05D006603 6.2e-247 857.4 479 87.9
CsaV3_7G021940 Cucumis sativus L. HOM05D004902 ORTHO05D006603 4.0e-246 854.7 518 83.6
PSO832G3378 Papaver somniferum HOM05D004902 ORTHO05D006603 6.9e-246 854.0 554 78.3
Gohir.A10G179900 Gossypium hirsutum HOM05D004902 ORTHO05D006603 4.2e-243 844.7 605 74.4
Peaxi162Scf00235g00424 Petunia axillaris HOM05D004902 ORTHO05D006603 9.0e-238 827.0 576 74.7
Ah.13g076200 Amaranthus hybridus HOM05D004902 ORTHO05D006603 4.2e-235 818.1 589 72.8
AagrBONN_evm.TU.Sc2ySwM_117.3547 Anthoceros agrestis HOM05D004902 ORTHO05D006603 7.9e-234 813.9 553 72.5
DCAR_022578 Daucus carota HOM05D004902 ORTHO05D006603 2.1e-226 789.3 586 71.0
Mapoly0071s0086 Marchantia polymorpha HOM05D004902 ORTHO05D006603 4.6e-226 788.1 537 71.9
Hma1.2p1_0036F.1_g023430 Hydrangea macrophylla HOM05D004902 ORTHO05D006603 1.0e-225 786.9 484 81.2
Pp3c1_20280 Physcomitrium patens HOM05D004902 ORTHO05D006603 5.1e-225 784.6 538 72.5
Nitab4.5_0022774g0010 Nicotiana tabacum HOM05D004902 ORTHO05D006603 5.7e-224 781.2 462 83.1
SMO119G0352 Selaginella moellendorffii HOM05D004902 ORTHO05D006603 1.3e-223 780.0 532 72.4
CBR_g4356 Chara braunii HOM05D004902 ORTHO05D006603 2.2e-223 779.2 550 69.8
unitig_85.g27329 Utricularia gibba HOM05D004902 ORTHO05D006603 5.7e-208 728.0 526 71.3
AUR62013514 Chenopodium quinoa HOM05D004902 ORTHO05D006603 3.5e-205 718.8 559 67.3
CAN.G677.16 Capsicum annuum HOM05D004902 ORTHO05D006603 3.4e-192 675.6 523 69.2
Nitab4.5_0013139g0010 Nicotiana tabacum HOM05D004902 ORTHO05D006603 1.2e-189 667.2 405 82.7
MCO02G311 Micromonas commoda HOM05D004902 ORTHO05D006603 1.9e-187 659.8 538 61.9
HanXRQChr08g0233821 Helianthus annuus HOM05D004902 ORTHO05D006603 1.3e-167 594.0 410 75.1
MD11G1214000 Malus domestica HOM05D004902 ORTHO05D006603 4.1e-166 589.0 341 86.5
A01p18110 Brassica napus HOM05D004902 ORTHO05D006603 1.7e-164 583.6 574 57.8
Zm00001eb011150 Zea mays HOM05D004902 ORTHO05D006603 3.4e-160 569.3 356 79.2
PRCOL_00006765 Prasinoderma coloniale HOM05D004902 ORTHO05D006603 5.8e-160 568.5 510 58.0
Cfa025092 Carpinus fangiana HOM05D004902 ORTHO05D006603 7.8e-157 558.1 547 53.2
Cre11.g481500 Chlamydomonas reinhardtii HOM05D004902 ORTHO05D006603 2.1e-133 480.3 556 48.7
Cpa.g.sc12.277 Carica papaya HOM05D004902 ORTHO05D006603 2.8e-130 469.9 257 91.1
Cpa.g.c34168 Carica papaya HOM05D004902 ORTHO05D006603 4.7e-101 372.9 249 74.7
MD11G1213900 Malus domestica HOM05D004902 ORTHO05D006603 3.0e-92 343.6 188 84.6
Lsat_1_v5_gn_3_2301 Lactuca sativa HOM05D004902 ORTHO05D006603 2.9e-71 273.9 410 45.1
Glyma.08G323300 Glycine max HOM05D004902 ORTHO05D006603 1.2e-67 261.9 208 63.9
Zm00001eb081410 Zea mays HOM05D004902 ORTHO05D006603 2.9e-58 230.7 198 58.1
VMungo0540G1125 Vigna mungo HOM05D004902 ORTHO05D006603 3.9e-47 193.7 156 67.9
RcHm_v2.0_Chr4g0412471 Rosa chinensis HOM05D004902 ORTHO05D006603 8.1e-45 186.0 153 66.0
SEGI_16435 Sequoiadendron giganteum HOM05D004902 ORTHO05D006603 4.0e-44 183.7 116 80.2
BraA01t01766Z Brassica rapa HOM05D004902 ORTHO05D006603 2.4e-41 174.5 122 73.8
SEGI_31768 Sequoiadendron giganteum HOM05D004902 ORTHO05D006603 5.8e-35 153.3 118 60.2
Aqoxy84s005 Aquilegia oxysepala HOM05D004902 ORTHO05D038539 3.9e-31 140.6 314 32.8
Glyma.08G319400 Glycine max HOM05D004902 ORTHO05D029739 4.9e-26 123.6 76 85.5
Lsat_1_v5_gn_0_44000 Lactuca sativa HOM05D004902 ORTHO05D038539 8.4e-26 122.9 312 33.0
BcaNung03560 Brassica carinata HOM05D004902 ORTHO05D006603 7.6e-19 99.8 57 80.7
FvH4_6g25500 Fragaria vesca HOM05D000003 ORTHO05D000007 3.8e-18 97.4 58 81.0
Lsat_1_v5_gn_3_69341 Lactuca sativa HOM05D004902 ORTHO05D006603 6.2e-13 80.1 126 42.1
Ah.01g018890 Amaranthus hybridus HOM05D004902 ORTHO05D006603 2.4e-12 78.2 150 40.7
Lsat_1_v5_gn_4_11281 Lactuca sativa HOM05D004902 ORTHO05D006603 2.4e-12 78.2 107 45.8
BcaNung03565 Brassica carinata HOM05D004902 ORTHO05D006603 5.3e-12 77.0 122 45.9
TPR.G39977 Trifolium pratense HOM05D004902 ORTHO05D006603 1.2e-11 75.9 42 81.0
SEGI_35364 Sequoiadendron giganteum HOM05D004902 ORTHO05D025756 5.8e-11 73.6 46 67.4
HanXRQChr08g0233831 Helianthus annuus HOM05D004902 ORTHO05D006603 6.5e-10 70.1 42 76.2
TWI38G0888 Tripterygium wilfordii HOM05D004902 ORTHO05D029739 2.1e-08 65.1 52 71.2
PGSC0003DMG400008060 Solanum tuberosum HOM05D005643 ORTHO05D006819 3.0e-07 61.2 197 25.9
GSVIVG01021644001 Vitis vinifera HOM05D004902 ORTHO05D024725 3.0e-07 61.2 35 74.3
RcHm_v2.0_Chr5g0040621 Rosa chinensis HOM05D004902 ORTHO05D006603 1.9e-06 58.5 37 78.4
Sopen11g028020 Solanum pennellii HOM05D005643 ORTHO05D006819 1.9e-06 58.5 199 25.1
Solyc11g069290.2 Solanum lycopersicum HOM05D005643 ORTHO05D006819 2.5e-06 58.2 199 25.1
Lsat_1_v5_gn_0_720 Lactuca sativa HOM05D004902 ORTHO05D029739 5.7e-06 57.0 55 58.2
Lsat_1_v5_gn_2_18401 Lactuca sativa HOM05D004902 ORTHO05D233888 5.7e-06 57.0 112 37.5


User provided reference genes

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