Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT11G1518 Cannabis sativa HOM05D006738 ORTHO05D008191 4.2e-61 238.0 139 100.0
Prupe.1G547300 Prunus persica HOM05D006738 ORTHO05D008191 4.6e-47 191.4 139 79.1
MD15G1400100 Malus domestica HOM05D006738 ORTHO05D008191 3.9e-46 188.3 139 78.4
MD08G1215600 Malus domestica HOM05D006738 ORTHO05D008191 4.3e-45 184.9 139 77.7
Solyc06g064810.3 Solanum lycopersicum HOM05D006738 ORTHO05D008191 1.2e-44 183.3 139 66.9
Sopen06g023320 Solanum pennellii HOM05D006738 ORTHO05D008191 1.2e-44 183.3 139 66.9
PGSC0003DMG400005175 Solanum tuberosum HOM05D006738 ORTHO05D008191 1.6e-44 183.0 139 66.9
Nitab4.5_0006564g0050 Nicotiana tabacum HOM05D006738 ORTHO05D008191 4.7e-44 181.4 139 67.6
FvH4_5g25840 Fragaria vesca HOM05D006738 ORTHO05D008191 2.3e-43 179.1 142 67.6
FAN18G1689 Fragaria x ananassa HOM05D006738 ORTHO05D008191 2.3e-43 179.1 142 67.6
Potri.019G076400 Populus trichocarpa HOM05D006738 ORTHO05D008191 4.0e-43 178.3 140 76.4
RcHm_v2.0_Chr7g0216321 Rosa chinensis HOM05D006738 ORTHO05D008191 1.2e-42 176.8 142 68.3
FAN04G1736 Fragaria x ananassa HOM05D006738 ORTHO05D008191 1.5e-42 176.4 142 66.9
CiPaw.04G011300 Carya illinoinensis HOM05D006738 ORTHO05D008191 2.0e-42 176.0 141 77.3
FAN08G0599 Fragaria x ananassa HOM05D006738 ORTHO05D008191 2.6e-42 175.6 142 66.9
Sabra19G0086800 Salix brachista HOM05D006738 ORTHO05D008191 2.6e-42 175.6 140 75.0
Oeu048220.2 Olea europaea HOM05D006738 ORTHO05D008191 6.4e-41 171.0 139 76.3
PGR042G2463 Punica granatum HOM05D006738 ORTHO05D008191 1.1e-40 170.2 139 72.7
CiPaw.03G017200 Carya illinoinensis HOM05D006738 ORTHO05D008191 1.9e-40 169.5 141 74.5
Cc10_g09240 Coffea canephora HOM05D006738 ORTHO05D008191 3.2e-40 168.7 138 75.4
Migut.C01346 Erythranthe guttata HOM05D006738 ORTHO05D008191 4.1e-40 168.3 140 61.4
ECA234G1792 Erigeron canadensis HOM05D006738 ORTHO05D008191 7.0e-40 167.5 140 60.7
QL09p004200 Quercus lobata HOM05D006738 ORTHO05D008191 9.2e-40 167.2 143 74.1
Lsat_1_v5_gn_5_78501 Lactuca sativa HOM05D006738 ORTHO05D008191 2.0e-39 166.0 138 61.6
QL09p002987 Quercus lobata HOM05D006738 ORTHO05D008191 2.0e-39 166.0 143 62.9
QL09p004074 Quercus lobata HOM05D006738 ORTHO05D008191 2.0e-39 166.0 143 73.4
Dinv41794 Davidia involucrata HOM05D006738 ORTHO05D008191 2.7e-39 165.6 143 73.4
Cpa.g.sc21.54 Carica papaya HOM05D006738 ORTHO05D008191 4.6e-39 164.9 136 73.5
COL.COLO4_24620 Corchorus olitorius HOM05D006738 ORTHO05D008191 4.6e-39 164.9 140 73.6
arahy.Tifrunner.gnm1.ann1.WI646Q Arachis hypogaea HOM05D006738 ORTHO05D008191 6.0e-39 164.5 139 64.7
SGA_v2.0_scaffold24G10619 Striga asiatica HOM05D006738 ORTHO05D008191 7.8e-39 164.1 139 71.2
HPP92_002035 Vanilla planifolia HOM05D006738 ORTHO05D008191 1.0e-38 163.7 135 75.6
MELO3C022198.2 Cucumis melo HOM05D006738 ORTHO05D008191 1.7e-38 162.9 135 72.6
AUR62032974 Chenopodium quinoa HOM05D006738 ORTHO05D008191 2.3e-38 162.5 143 69.9
CSS0018644 Camellia sinensis var. sinensis HOM05D006738 ORTHO05D008191 3.0e-38 162.2 143 62.9
CSS0019392 Camellia sinensis var. sinensis HOM05D006738 ORTHO05D008191 3.0e-38 162.2 143 62.9
Eucgr.F02960 Eucalyptus grandis HOM05D006738 ORTHO05D008191 3.9e-38 161.8 140 74.3
arahy.Tifrunner.gnm1.ann1.67ZQRX Arachis hypogaea HOM05D006738 ORTHO05D008191 6.6e-38 161.0 139 64.0
TWI14G1101 Tripterygium wilfordii HOM05D006738 ORTHO05D008191 6.6e-38 161.0 139 69.8
CDE05G2754 Ceratophyllum demersum HOM05D006738 ORTHO05D008191 8.6e-38 160.6 135 70.4
GSVIVG01025906001 Vitis vinifera HOM05D006738 ORTHO05D008191 8.6e-38 160.6 144 70.8
AUR62017706 Chenopodium quinoa HOM05D006738 ORTHO05D008191 1.1e-37 160.2 137 71.5
Sc20g0004710 Simmondsia chinensis HOM05D006738 ORTHO05D008191 1.1e-37 160.2 140 58.6
Thecc.08G171800 Theobroma cacao HOM05D006738 ORTHO05D008191 1.1e-37 160.2 140 71.4
Atru.chr12.822 Acer truncatum HOM05D006738 ORTHO05D008191 1.5e-37 159.8 141 70.9
Glyma.01G010600 Glycine max HOM05D006738 ORTHO05D008191 1.5e-37 159.8 137 72.3
unitig_748.g7730 Utricularia gibba HOM05D000331 ORTHO05D003399 1.5e-37 159.8 142 64.1
PSO782G5196 Papaver somniferum HOM05D006738 ORTHO05D008191 1.9e-37 159.5 138 71.7
THA.LOC104815902 Tarenaya hassleriana HOM05D006738 ORTHO05D008191 1.9e-37 159.5 135 73.3
Ciclev10022763m.g Citrus clementina HOM05D006738 ORTHO05D008191 2.5e-37 159.1 142 70.4
Duzib211G0443 Durio zibethinus HOM05D006738 ORTHO05D008191 2.5e-37 159.1 141 70.2
Gohir.D05G253900 Gossypium hirsutum HOM05D006738 ORTHO05D008191 3.3e-37 158.7 140 73.6
CsaV3_5G040220 Cucumis sativus L. HOM05D006738 ORTHO05D008191 4.3e-37 158.3 135 65.9
Manes.02G195900 Manihot esculenta HOM05D006738 ORTHO05D008191 5.6e-37 157.9 144 70.1
Gohir.A05G252100 Gossypium hirsutum HOM05D006738 ORTHO05D008191 7.3e-37 157.5 140 72.9
PSO170G3684 Papaver somniferum HOM05D006738 ORTHO05D008191 1.2e-36 156.8 139 71.9
Nn5g27492 Nelumbo nucifera HOM05D006738 ORTHO05D008191 1.6e-36 156.4 140 73.6
arahy.Tifrunner.gnm1.ann1.H480WY Arachis hypogaea HOM05D006738 ORTHO05D008191 3.6e-36 155.2 135 63.0
Sed0003815 Sechium edule HOM05D006738 ORTHO05D008191 3.6e-36 155.2 139 71.2
Aa31LG6G8130 Aethionema arabicum HOM05D000065 ORTHO05D000162 8.1e-36 154.1 136 69.1
BolC6t36356H Brassica oleracea HOM05D006738 ORTHO05D008191 1.1e-35 153.7 135 57.8
Ah.01g012440 Amaranthus hybridus HOM05D006738 ORTHO05D008191 1.4e-35 153.3 137 58.4
EL10Ac9g22957 Beta vulgaris HOM05D006738 ORTHO05D008191 1.4e-35 153.3 141 56.7
C06p12150 Brassica napus HOM05D006738 ORTHO05D008191 1.4e-35 153.3 135 57.8
BcaC08g43833 Brassica carinata HOM05D006738 ORTHO05D008191 1.8e-35 152.9 135 57.8
TPR.G34128 Trifolium pratense HOM05D006738 ORTHO05D008191 1.8e-35 152.9 139 67.6
Medtr4g031650 Medicago truncatula HOM05D006738 ORTHO05D008191 2.3e-35 152.5 139 68.3
DCAR_002119 Daucus carota HOM05D006738 ORTHO05D008191 5.2e-35 151.4 139 60.4
Phvul.002G133500 Phaseolus vulgaris HOM05D006738 ORTHO05D008191 5.2e-35 151.4 137 69.3
Sp1g29140 Schrenkiella parvula HOM05D006738 ORTHO05D008191 1.2e-34 150.2 139 68.3
VMungo1215G3331 Vigna mungo HOM05D006738 ORTHO05D008191 1.2e-34 150.2 137 59.9
Aqoxy6G00074 Aquilegia oxysepala HOM05D006738 ORTHO05D008191 1.5e-34 149.8 142 56.3
Lj3g0020973 Lotus japonicus HOM05D006738 ORTHO05D008191 1.5e-34 149.8 137 56.2
AT1G33810 Arabidopsis thaliana HOM05D006738 ORTHO05D008191 3.4e-34 148.7 136 56.6
A09p32610 Brassica napus HOM05D006738 ORTHO05D008191 3.4e-34 148.7 138 57.2
BraA09t38801Z Brassica rapa HOM05D006738 ORTHO05D008191 3.4e-34 148.7 138 57.2
Psat0s2394g0120 Pisum sativum HOM05D006738 ORTHO05D008191 4.4e-34 148.3 137 67.2
Thhalv10009075m.g Eutrema salsugineum HOM05D006738 ORTHO05D008191 5.8e-34 147.9 135 68.9
Lalb_Chr01g0000011 Lupinus albus HOM05D006738 ORTHO05D008191 7.5e-34 147.5 135 70.4
BcaB07g33015 Brassica carinata HOM05D006738 ORTHO05D008191 1.3e-33 146.7 135 66.7
AL1G48260 Arabidopsis lyrata HOM05D006738 ORTHO05D008191 2.2e-33 146.0 137 55.5
Haze_13918 Corylus avellana HOM05D006738 ORTHO05D008191 2.2e-33 146.0 145 55.9
ATR1089G071 Amborella trichopoda HOM05D006738 ORTHO05D008191 3.7e-33 145.2 135 68.1
CARHR033210 Cardamine hirsuta HOM05D006738 ORTHO05D008191 3.7e-33 145.2 136 68.4
Peaxi162Scf00269g01621 Petunia axillaris HOM05D006738 ORTHO05D008191 3.2e-32 142.1 139 55.4
Carub.0001s3198 Capsella rubella HOM05D006738 ORTHO05D008191 4.1e-32 141.7 137 66.4
Lj2A790G37 Lonicera japonica HOM05D006738 ORTHO05D008191 1.6e-31 139.8 115 68.7
Os08g0112600 Oryza sativa ssp. japonica HOM05D006738 ORTHO05D008191 5.2e-27 124.8 143 47.6
MBI03_g14516_MAGBIO Magnolia biondii HOM05D006738 ORTHO05D008191 2.9e-25 119.0 99 78.8
QL09p000479 Quercus lobata HOM05D006738 ORTHO05D008191 6.4e-25 117.9 119 57.1
Actinidia29399 Actinidia chinensis HOM05D006738 ORTHO05D008191 1.4e-24 116.7 111 72.1
QL09p000618 Quercus lobata HOM05D006738 ORTHO05D008191 1.4e-24 116.7 96 66.7
Rhsim07G0068100 Rhododendron simsii HOM05D006738 ORTHO05D008191 1.4e-24 116.7 164 47.0
Gorai.009G265500 Gossypium raimondii HOM05D006738 ORTHO05D008191 4.1e-24 115.2 115 70.4
FAN13G2380 Fragaria x ananassa HOM05D006738 ORTHO05D008191 3.0e-22 109.0 140 48.6
CiPaw.09G026000 Carya illinoinensis HOM05D006738 ORTHO05D008191 3.3e-21 105.5 149 46.3
QL09p000342 Quercus lobata HOM05D006738 ORTHO05D008191 4.3e-21 105.1 143 48.3
AagrBONN_evm.TU.Sc2ySwM_228.5134 Anthoceros agrestis HOM05D006738 ORTHO05D008191 2.8e-20 102.4 127 38.6
SEGI_33861 Sequoiadendron giganteum HOM05D006738 ORTHO05D008191 3.6e-20 102.1 116 60.3
Mapoly0047s0047 Marchantia polymorpha HOM05D006738 ORTHO05D008191 8.9e-19 97.4 111 44.1
vmacro13762 Vaccinium macrocarpon HOM05D006738 ORTHO05D008191 1.2e-18 97.1 132 45.5
Pp3c3_5650 Physcomitrium patens HOM05D006738 ORTHO05D008191 4.4e-18 95.1 128 38.3
SMO118G0306 Selaginella moellendorffii HOM05D006738 ORTHO05D008191 4.4e-18 95.1 126 37.3
Cc10_g16410 Coffea canephora HOM05D006738 ORTHO05D008191 7.6e-18 94.4 77 62.3
Zm00001eb260580 Zea mays HOM05D006738 ORTHO05D008191 2.9e-17 92.4 120 55.8
HanXRQChr10g0309751 Helianthus annuus HOM05D006738 ORTHO05D008191 2.7e-15 85.9 77 58.4
SHI08988 Sapria himalayana HOM05D006738 ORTHO05D008191 6.0e-15 84.7 77 57.1
Oeu017736.2 Olea europaea HOM05D006738 ORTHO05D008191 1.0e-14 84.0 88 52.3
ClCG08G000640 Citrullus lanatus HOM05D006738 ORTHO05D008191 3.9e-14 82.0 72 59.7
Zm00001eb236960 Zea mays HOM05D002538 ORTHO05D008191 2.5e-13 79.3 112 41.1
Cfa008114 Carpinus fangiana HOM05D006738 ORTHO05D008191 5.6e-13 78.2 63 63.5
Medtr4g031845 Medicago truncatula HOM05D006738 ORTHO05D008191 2.8e-12 75.9 68 57.4
QL09p003020 Quercus lobata HOM05D006738 ORTHO05D008191 3.1e-11 72.4 70 55.7
Glyma.09G210500 Glycine max HOM05D006738 ORTHO05D008191 2.6e-10 69.3 74 48.6
Hma1.2p1_0935F.1_g238670 Hydrangea macrophylla HOM05D006738 ORTHO05D008191 3.9e-06 55.5 45 62.2
CiPaw.16G110800 Carya illinoinensis HOM05D006738 ORTHO05D008191 6.6e-06 54.7 66 47.0


User provided reference genes

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