Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT11G1503 Cannabis sativa HOM05D007223 ORTHO05D008932 4.3e-102 374.8 194 100.0
Cpa.g.sc233.11 Carica papaya HOM05D007223 ORTHO05D008932 3.4e-43 179.1 181 57.5
Dinv41246 Davidia involucrata HOM05D007223 ORTHO05D008932 8.5e-42 174.5 183 58.5
Prupe.1G085900 Prunus persica HOM05D007223 ORTHO05D008932 1.4e-41 173.7 178 59.0
RcHm_v2.0_Chr4g0402441 Rosa chinensis HOM05D007223 ORTHO05D008932 1.9e-41 173.3 181 56.9
FAN17G0481 Fragaria x ananassa HOM05D007223 ORTHO05D008932 4.2e-41 172.2 178 57.3
Gorai.004G099600 Gossypium raimondii HOM05D007223 ORTHO05D008932 7.2e-41 171.4 170 57.6
FAN22G1200 Fragaria x ananassa HOM05D007223 ORTHO05D008932 9.4e-41 171.0 178 57.3
Ciclev10010470m.g Citrus clementina HOM05D007223 ORTHO05D008932 1.2e-40 170.6 175 61.7
FvH4_4g08200 Fragaria vesca HOM05D007223 ORTHO05D008932 1.6e-40 170.2 179 56.4
FAN12G3200 Fragaria x ananassa HOM05D007223 ORTHO05D008932 1.6e-40 170.2 179 56.4
Phvul.003G145600 Phaseolus vulgaris HOM05D007223 ORTHO05D008932 1.6e-40 170.2 176 60.8
FAN07G1685 Fragaria x ananassa HOM05D007223 ORTHO05D008932 2.1e-40 169.9 178 56.7
Gohir.A08G084300 Gossypium hirsutum HOM05D007223 ORTHO05D008932 2.1e-40 169.9 174 56.9
Lj4g0003272 Lotus japonicus HOM05D007223 ORTHO05D008932 2.7e-40 169.5 177 57.1
Gohir.D08G093900 Gossypium hirsutum HOM05D007223 ORTHO05D008932 4.7e-40 168.7 170 57.1
Manes.14G153900 Manihot esculenta HOM05D007223 ORTHO05D008932 4.7e-40 168.7 183 56.3
QL02p097776 Quercus lobata HOM05D007223 ORTHO05D008932 4.7e-40 168.7 184 56.0
Duzib168G2276 Durio zibethinus HOM05D007223 ORTHO05D008932 1.0e-39 167.5 175 58.3
GSVIVG01029215001 Vitis vinifera HOM05D007223 ORTHO05D008932 1.0e-39 167.5 130 69.2
Eucgr.C02329 Eucalyptus grandis HOM05D007223 ORTHO05D008932 2.3e-39 166.4 175 55.4
Medtr4g128070 Medicago truncatula HOM05D007223 ORTHO05D008932 2.3e-39 166.4 110 76.4
CiPaw.08G036200 Carya illinoinensis HOM05D007223 ORTHO05D008932 3.0e-39 166.0 174 56.3
MD13G1253600 Malus domestica HOM05D007223 ORTHO05D008932 3.0e-39 166.0 177 55.9
Oeu042168.1 Olea europaea HOM05D007223 ORTHO05D008932 3.9e-39 165.6 181 59.1
Dinv42721 Davidia involucrata HOM05D007223 ORTHO05D008932 6.7e-39 164.9 173 58.4
Dinv43380 Davidia involucrata HOM05D007223 ORTHO05D008932 6.7e-39 164.9 173 58.4
Cc06_g13230 Coffea canephora HOM05D007223 ORTHO05D008932 1.1e-38 164.1 184 54.3
arahy.Tifrunner.gnm1.ann1.LBMC6N Arachis hypogaea HOM05D007223 ORTHO05D008932 1.5e-38 163.7 190 55.3
Lalb_Chr07g0180471 Lupinus albus HOM05D007223 ORTHO05D008932 2.6e-38 162.9 182 53.3
BcaB08g36098 Brassica carinata HOM05D007223 ORTHO05D008932 9.7e-38 161.0 155 58.1
BcaC04g19969 Brassica carinata HOM05D007223 ORTHO05D008932 1.3e-37 160.6 155 57.4
Cfa013503 Carpinus fangiana HOM05D007223 ORTHO05D008932 1.3e-37 160.6 114 69.3
PGR102G0813 Punica granatum HOM05D007223 ORTHO05D008932 1.3e-37 160.6 115 73.0
Sp6g19140 Schrenkiella parvula HOM05D007223 ORTHO05D008932 1.3e-37 160.6 111 70.3
Atru.chr7.623 Acer truncatum HOM05D007223 ORTHO05D008932 1.7e-37 160.2 111 73.9
Actinidia04146 Actinidia chinensis HOM05D007223 ORTHO05D008932 1.7e-37 160.2 106 74.5
BraA02t05920Z Brassica rapa HOM05D007223 ORTHO05D008932 2.2e-37 159.8 179 52.0
arahy.Tifrunner.gnm1.ann1.1E3WXN Arachis hypogaea HOM05D007223 ORTHO05D008932 2.8e-37 159.5 196 53.1
A02p08480 Brassica napus HOM05D007223 ORTHO05D008932 2.8e-37 159.5 179 52.0
TPR.G5371 Trifolium pratense HOM05D007223 ORTHO05D008932 2.8e-37 159.5 106 76.4
MSTRG.6217 Avicennia marina HOM05D007223 ORTHO05D008932 3.7e-37 159.1 194 54.1
CSS0040203 Camellia sinensis var. sinensis HOM05D007223 ORTHO05D008932 3.7e-37 159.1 185 55.7
Thhalv10015874m.g Eutrema salsugineum HOM05D007223 ORTHO05D008932 3.7e-37 159.1 111 71.2
Thecc.09G177700 Theobroma cacao HOM05D007223 ORTHO05D008932 4.8e-37 158.7 175 56.0
AL8G33400 Arabidopsis lyrata HOM05D007223 ORTHO05D008932 6.3e-37 158.3 180 53.9
Nn8g40486 Nelumbo nucifera HOM05D007223 ORTHO05D008932 6.3e-37 158.3 175 54.3
Potri.006G166900 Populus trichocarpa HOM05D007223 ORTHO05D008932 6.3e-37 158.3 185 53.0
Potri.018G092300 Populus trichocarpa HOM05D007223 ORTHO05D008932 6.3e-37 158.3 185 50.8
Duzib170G0975 Durio zibethinus HOM05D007223 ORTHO05D008932 1.1e-36 157.5 173 57.2
Peaxi162Scf00231g00621 Petunia axillaris HOM05D007223 ORTHO05D008932 1.1e-36 157.5 192 50.0
THA.LOC104813522 Tarenaya hassleriana HOM05D007223 ORTHO05D008932 1.1e-36 157.5 105 73.3
TAR625G0650 Trochodendron aralioides HOM05D007223 ORTHO05D008932 1.8e-36 156.8 174 54.6
BolC2t07548H Brassica oleracea HOM05D007223 ORTHO05D008932 2.4e-36 156.4 179 51.4
C02p14240 Brassica napus HOM05D007223 ORTHO05D008932 3.1e-36 156.0 179 51.4
CsaV3_2G008380 Cucumis sativus L. HOM05D007223 ORTHO05D008932 3.1e-36 156.0 152 55.3
AT5G57420 Arabidopsis thaliana HOM05D007223 ORTHO05D008932 4.1e-36 155.6 180 52.2
Carub.0008s1794 Capsella rubella HOM05D007223 ORTHO05D008932 4.1e-36 155.6 111 71.2
Psat4g012360 Pisum sativum HOM05D007223 ORTHO05D008932 5.3e-36 155.2 109 72.5
CARHR271220 Cardamine hirsuta HOM05D007223 ORTHO05D008932 7.0e-36 154.8 178 52.2
Sabra06G0129600 Salix brachista HOM05D007223 ORTHO05D008932 9.1e-36 154.5 183 51.4
TAR383G1061 Trochodendron aralioides HOM05D007223 ORTHO05D008932 9.1e-36 154.5 175 54.9
BcaB05g22346 Brassica carinata HOM05D007223 ORTHO05D008932 1.2e-35 154.1 176 52.8
THA.LOC104817792 Tarenaya hassleriana HOM05D007223 ORTHO05D008932 1.2e-35 154.1 178 52.8
Lalb_Chr13g0300221 Lupinus albus HOM05D007223 ORTHO05D008932 1.6e-35 153.7 106 72.6
vmacro13125 Vaccinium macrocarpon HOM05D007223 ORTHO05D008932 2.0e-35 153.3 197 50.8
MSTRG.19707 Avicennia marina HOM05D007223 ORTHO05D008932 2.6e-35 152.9 116 69.0
Sed0023808 Sechium edule HOM05D007223 ORTHO05D008932 2.6e-35 152.9 105 71.4
SalBow6G4081 Salvia bowleyana HOM05D007223 ORTHO05D008932 4.5e-35 152.1 111 70.3
Rhsim01G0004500 Rhododendron simsii HOM05D007223 ORTHO05D008932 1.3e-34 150.6 115 67.8
Hma1.2p1_1025F.1_g249310 Hydrangea macrophylla HOM05D007223 ORTHO05D008932 2.9e-34 149.4 195 50.8
Lsat_1_v5_gn_5_85421 Lactuca sativa HOM05D007223 ORTHO05D008932 3.8e-34 149.1 139 57.6
SGA_v2.0_scaffold69G23253 Striga asiatica HOM05D007223 ORTHO05D008932 1.1e-33 147.5 113 68.1
DCAR_014699 Daucus carota HOM05D007223 ORTHO05D008932 2.5e-33 146.4 122 65.6
HanXRQChr10g0308641 Helianthus annuus HOM05D007223 ORTHO05D008932 5.5e-33 145.2 171 51.5
Os04g0653300 Oryza sativa ssp. japonica HOM05D007223 ORTHO05D008932 7.2e-33 144.8 118 64.4
AUR62033216 Chenopodium quinoa HOM05D007223 ORTHO05D008932 2.1e-32 143.3 124 63.7
MBI16_g39833_MAGBIO Magnolia biondii HOM05D007223 ORTHO05D008932 4.7e-32 142.1 111 63.1
ATR0580G272 Amborella trichopoda HOM05D007223 ORTHO05D008932 6.1e-32 141.7 139 55.4
Solyc07g019450.3 Solanum lycopersicum HOM05D007223 ORTHO05D008932 5.2e-31 138.7 102 67.6
PSO782G5105 Papaver somniferum HOM05D007223 ORTHO05D008932 8.8e-31 137.9 121 60.3
Ca_21226_v3 Cicer arietinum L. HOM05D007223 ORTHO05D008932 4.4e-30 135.6 120 62.5
ECA234G1236 Erigeron canadensis HOM05D007223 ORTHO05D008932 4.4e-30 135.6 103 66.0
COL.COLO4_37700 Corchorus olitorius HOM05D007223 ORTHO05D008932 4.8e-29 132.1 114 66.7
SEGI_39293 Sequoiadendron giganteum HOM05D007223 ORTHO05D008932 1.8e-28 130.2 98 65.3
Oeu004200.1 Olea europaea HOM05D007223 ORTHO05D008932 2.4e-28 129.8 88 72.7
C09p49290 Brassica napus HOM05D007223 ORTHO05D008932 2.0e-27 126.7 145 51.7
BolC9t57780H Brassica oleracea HOM05D007223 ORTHO05D008932 2.0e-27 126.7 145 51.7
BraA10t43566Z Brassica rapa HOM05D007223 ORTHO05D008932 4.5e-27 125.6 132 54.5
Haze_22095 Corylus avellana HOM05D007223 ORTHO05D008932 5.9e-27 125.2 88 69.3
Migut.J01482 Erythranthe guttata HOM05D007223 ORTHO05D008932 5.9e-27 125.2 114 64.0
A10p14870 Brassica napus HOM05D007223 ORTHO05D008932 1.3e-26 124.0 129 55.0
ClCG11G012160 Citrullus lanatus HOM05D007223 ORTHO05D008932 1.7e-26 123.6 85 70.6
BcaC03g14153 Brassica carinata HOM05D007223 ORTHO05D008932 2.9e-26 122.9 154 48.7
MELO3C004026.2 Cucumis melo HOM05D007223 ORTHO05D008932 3.8e-26 122.5 97 64.9
VMungo1215G0104 Vigna mungo HOM05D007223 ORTHO05D008932 6.5e-26 121.7 153 51.6
Aa31LG3G13310 Aethionema arabicum HOM05D007223 ORTHO05D008932 1.5e-25 120.6 155 48.4
HPP92_017414 Vanilla planifolia HOM05D007223 ORTHO05D008932 2.5e-25 119.8 120 52.5
MBI14_g17369_MAGBIO Magnolia biondii HOM05D003252 ORTHO05D003640 3.6e-24 115.9 89 66.3
Lj5C590T0 Lonicera japonica HOM05D007223 ORTHO05D008932 8.0e-24 114.8 159 49.7
Lj5C7T1 Lonicera japonica HOM05D007223 ORTHO05D008932 8.0e-24 114.8 159 49.7
PGSC0003DMG400043142 Solanum tuberosum HOM05D007223 ORTHO05D008932 8.8e-23 111.3 82 68.3
EL10Ac8g18282 Beta vulgaris HOM05D007223 ORTHO05D008932 4.8e-21 105.5 87 60.9
Aqoxy7G03081 Aquilegia oxysepala HOM05D007223 ORTHO05D008932 1.4e-20 104.0 70 71.4
SEGI_19995 Sequoiadendron giganteum HOM05D007223 ORTHO05D008932 1.7e-18 97.1 105 51.4
Zm00001eb432400 Zea mays HOM05D007223 ORTHO05D008932 1.1e-17 94.4 138 43.5
Nitab4.5_0001972g0010 Nicotiana tabacum HOM05D007223 ORTHO05D008932 4.2e-17 92.4 109 49.5
Mapoly0013s0010 Marchantia polymorpha HOM05D007223 ORTHO05D008932 5.5e-17 92.0 99 47.5
AagrBONN_evm.TU.Sc2ySwM_117.1187 Anthoceros agrestis HOM05D007223 ORTHO05D008932 1.4e-15 87.4 97 47.4
Glyma.20G083900 Glycine max HOM05D007223 ORTHO05D008932 9.8e-14 81.3 169 39.6
CBR_g39692 Chara braunii HOM05D000117 ORTHO05D000070 8.3e-13 78.2 126 38.1
CBR_g19697 Chara braunii HOM05D000117 ORTHO05D008932 4.5e-11 72.4 103 36.9
SMO141G0094 Selaginella moellendorffii HOM05D058183 ORTHO05D008932 1.0e-10 71.2 72 55.6
SMO170G0055 Selaginella moellendorffii HOM05D058183 ORTHO05D008932 1.0e-10 71.2 72 55.6
Cpa.g.sc217.3 Carica papaya HOM05D000117 ORTHO05D004016 3.6e-08 62.8 126 34.9
MBI03_g18679_MAGBIO Magnolia biondii HOM05D000117 ORTHO05D000070 8.0e-08 61.6 100 35.0
MBI19_g04829_MAGBIO Magnolia biondii HOM05D000117 ORTHO05D000070 1.4e-07 60.8 102 32.4
THA.LOC104814530 Tarenaya hassleriana HOM05D000117 ORTHO05D000070 1.8e-07 60.5 96 34.4
Ciclev10005544m.g Citrus clementina HOM05D000117 ORTHO05D000070 3.0e-07 59.7 95 32.6
Ca_09648_v3 Cicer arietinum L. HOM05D000117 ORTHO05D000070 4.0e-07 59.3 114 33.3
Actinidia38728 Actinidia chinensis HOM05D000117 ORTHO05D004016 1.2e-06 57.8 90 35.6
Dinv41484 Davidia involucrata HOM05D000117 ORTHO05D004016 1.2e-06 57.8 87 36.8
Phvul.003G167700 Phaseolus vulgaris HOM05D000117 ORTHO05D004016 1.2e-06 57.8 94 38.3
TAR381G0337 Trochodendron aralioides HOM05D000117 ORTHO05D000070 1.2e-06 57.8 106 32.1
Aa31LG2G21740 Aethionema arabicum HOM05D000117 ORTHO05D000070 1.5e-06 57.4 88 34.1
MBI18_g03841_MAGBIO Magnolia biondii HOM05D006046 ORTHO05D007580 1.5e-06 57.4 89 31.5
TWI34G0446 Tripterygium wilfordii HOM05D000117 ORTHO05D004016 1.5e-06 57.4 91 31.9
TWI53G0914 Tripterygium wilfordii HOM05D000117 ORTHO05D000070 1.5e-06 57.4 104 29.8
Gorai.009G058600 Gossypium raimondii HOM05D000117 ORTHO05D004016 2.0e-06 57.0 87 35.6
Nitab4.5_0006344g0020 Nicotiana tabacum HOM05D000117 ORTHO05D000070 2.0e-06 57.0 90 33.3
PSO017G5528 Papaver somniferum HOM05D000117 ORTHO05D004016 2.0e-06 57.0 92 33.7
PSO761G0698 Papaver somniferum HOM05D000117 ORTHO05D000070 2.0e-06 57.0 95 31.6
Psat6g062640 Pisum sativum HOM05D000117 ORTHO05D000070 2.0e-06 57.0 117 31.6
Gohir.D05G057500 Gossypium hirsutum HOM05D000117 ORTHO05D004016 2.6e-06 56.6 87 34.5
SalBow2G0935 Salvia bowleyana HOM05D000117 ORTHO05D000070 2.6e-06 56.6 106 32.1
Hund26547 Selenicereus undatus HOM05D000117 ORTHO05D004016 2.6e-06 56.6 87 34.5
Atru.chr7.1283 Acer truncatum HOM05D000117 ORTHO05D000070 3.4e-06 56.2 89 32.6
Actinidia26378 Actinidia chinensis HOM05D000117 ORTHO05D004016 3.4e-06 56.2 87 34.5
PSO210G6415 Papaver somniferum HOM05D000117 ORTHO05D000070 3.4e-06 56.2 95 31.6
Atru.chr4.1908 Acer truncatum HOM05D000117 ORTHO05D000070 4.4e-06 55.8 111 29.7
BcaC02g11416 Brassica carinata HOM05D000117 ORTHO05D000070 4.4e-06 55.8 120 25.8
C04p15810 Brassica napus HOM05D000117 ORTHO05D000070 4.4e-06 55.8 120 25.8
Gohir.D10G160400 Gossypium hirsutum HOM05D000117 ORTHO05D000070 4.4e-06 55.8 92 34.8
Lalb_Chr07g0179121 Lupinus albus HOM05D000117 ORTHO05D004016 4.4e-06 55.8 94 35.1
Medtr1g069495 Medicago truncatula HOM05D000117 ORTHO05D000070 4.4e-06 55.8 117 31.6
Oeu012625.1 Olea europaea HOM05D000117 ORTHO05D004016 4.4e-06 55.8 87 32.2
PSO170G3805 Papaver somniferum HOM05D000117 ORTHO05D004016 4.4e-06 55.8 92 30.4
PSO210G2904 Papaver somniferum HOM05D000117 ORTHO05D000070 4.4e-06 55.8 109 35.8
PSO832G4334 Papaver somniferum HOM05D000117 ORTHO05D000070 4.4e-06 55.8 109 35.8
Hund09276 Selenicereus undatus HOM05D000117 ORTHO05D000070 4.4e-06 55.8 87 34.5
Sc18g0000410 Simmondsia chinensis HOM05D000117 ORTHO05D004016 4.4e-06 55.8 87 33.3
TPR.G28140 Trifolium pratense HOM05D000117 ORTHO05D000070 4.4e-06 55.8 117 31.6
Duzib168G0601 Durio zibethinus HOM05D000054 ORTHO05D008307 5.7e-06 55.5 87 34.5
ECA247G2465 Erigeron canadensis HOM05D000117 ORTHO05D000070 5.7e-06 55.5 115 33.0
Manes.03G023800 Manihot esculenta HOM05D000117 ORTHO05D000070 5.7e-06 55.5 99 31.3
Os02g0805100 Oryza sativa ssp. japonica HOM05D000117 ORTHO05D000070 5.7e-06 55.5 88 36.4
Sabra02G0148400 Salix brachista HOM05D000117 ORTHO05D000070 5.7e-06 55.5 111 28.8
Cc10_g08190 Coffea canephora HOM05D000117 ORTHO05D000070 7.5e-06 55.1 98 29.6
Migut.N00234 Erythranthe guttata HOM05D000117 ORTHO05D000070 7.5e-06 55.1 128 32.0
Gorai.011G180100 Gossypium raimondii HOM05D000117 ORTHO05D000070 7.5e-06 55.1 92 34.8
Potri.006G161400 Populus trichocarpa HOM05D000117 ORTHO05D000070 7.5e-06 55.1 99 33.3
Sabra02G0148000 Salix brachista HOM05D000117 ORTHO05D000070 7.5e-06 55.1 111 28.8
Sabra06G0199500 Salix brachista HOM05D000117 ORTHO05D004016 7.5e-06 55.1 87 33.3
Cpa.g.c44394 Carica papaya HOM05D000117 ORTHO05D004016 9.8e-06 54.7 113 34.5
Thhalv10008626m.g Eutrema salsugineum HOM05D000117 ORTHO05D000070 9.8e-06 54.7 103 31.1
Glyma.17G112300 Glycine max HOM05D000117 ORTHO05D004016 9.8e-06 54.7 102 34.3
Lalb_Chr13g0301661 Lupinus albus HOM05D000117 ORTHO05D004016 9.8e-06 54.7 87 34.5
Nitab4.5_0000355g0060 Nicotiana tabacum HOM05D000117 ORTHO05D000070 9.8e-06 54.7 90 32.2
PSO782G5332 Papaver somniferum HOM05D000117 ORTHO05D000070 9.8e-06 54.7 108 33.3
SMO137G0202 Selaginella moellendorffii HOM05D000117 ORTHO05D000070 9.8e-06 54.7 96 34.4


User provided reference genes

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