Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT11G1461 Cannabis sativa HOM05D003590 ORTHO05D004290 1.8e-48 195.7 103 100.0
CANSAT64G0301 Cannabis sativa HOM05D003590 ORTHO05D004290 2.4e-37 158.7 139 68.3
FAN15G3511 Fragaria x ananassa HOM05D003590 ORTHO05D004290 2.4e-24 115.5 144 54.2
FAN27G0950 Fragaria x ananassa HOM05D003590 ORTHO05D004290 2.6e-23 112.1 144 52.1
FAN24G1875 Fragaria x ananassa HOM05D003590 ORTHO05D004290 5.8e-23 110.9 144 52.1
FvH4_2g19990 Fragaria vesca HOM05D003590 ORTHO05D004290 7.6e-23 110.5 144 52.1
Prupe.1G203200 Prunus persica HOM05D003590 ORTHO05D004290 8.4e-22 107.1 146 49.3
MD17G1177400 Malus domestica HOM05D003590 ORTHO05D004290 1.4e-21 106.3 146 48.6
MD00G1019200 Malus domestica HOM05D003590 ORTHO05D004290 1.9e-21 105.9 146 48.6
Cfa015230 Carpinus fangiana HOM05D003590 ORTHO05D004290 3.2e-21 105.1 142 50.0
RcHm_v2.0_Chr6g0285711 Rosa chinensis HOM05D003590 ORTHO05D004290 9.2e-21 103.6 149 48.3
FAN26G3423 Fragaria x ananassa HOM05D003590 ORTHO05D004290 1.1e-18 96.7 146 47.3
Gohir.D10G124700 Gossypium hirsutum HOM05D003590 ORTHO05D004290 1.5e-18 96.3 144 47.9
Gorai.011G137800 Gossypium raimondii HOM05D003590 ORTHO05D004290 1.5e-18 96.3 144 47.9
Gohir.A10G141800 Gossypium hirsutum HOM05D003590 ORTHO05D004290 1.9e-18 95.9 144 47.9
RcHm_v2.0_Chr2g0122441 Rosa chinensis HOM05D003590 ORTHO05D004290 4.3e-18 94.7 152 46.7
Atru.chr4.1363 Acer truncatum HOM05D003590 ORTHO05D004290 9.6e-18 93.6 143 47.6
CiPaw.01G172800 Carya illinoinensis HOM05D003590 ORTHO05D004290 9.6e-18 93.6 145 47.6
QL10p052769 Quercus lobata HOM05D003590 ORTHO05D004290 1.6e-17 92.8 151 45.0
CiPaw.02G102900 Carya illinoinensis HOM05D003590 ORTHO05D004290 2.8e-17 92.0 137 47.4
FAN19G0592 Fragaria x ananassa HOM05D003590 ORTHO05D004290 8.1e-17 90.5 108 53.7
Lalb_Chr19g0138461 Lupinus albus HOM05D003590 ORTHO05D004290 1.1e-16 90.1 140 45.7
Phvul.008G099200 Phaseolus vulgaris HOM05D003590 ORTHO05D004290 1.1e-16 90.1 140 47.9
Glyma.12G049400 Glycine max HOM05D003590 ORTHO05D004290 1.4e-16 89.7 140 48.6
Dinv33190 Davidia involucrata HOM05D003590 ORTHO05D004290 4.0e-16 88.2 145 45.5
Duzib151G0409 Durio zibethinus HOM05D003590 ORTHO05D004290 4.0e-16 88.2 148 43.2
Glyma.11G124800 Glycine max HOM05D003590 ORTHO05D004290 5.3e-16 87.8 140 49.3
FvH4_1g24800 Fragaria vesca HOM05D003590 ORTHO05D004290 1.5e-15 86.3 89 58.4
TAR362G0082 Trochodendron aralioides HOM05D003590 ORTHO05D004290 2.0e-15 85.9 144 46.5
FvH4_6g53380 Fragaria vesca HOM05D003590 ORTHO05D004290 3.4e-15 85.1 144 43.8
arahy.Tifrunner.gnm1.ann1.SY3MF3 Arachis hypogaea HOM05D003590 ORTHO05D004290 9.9e-15 83.6 142 47.9
ClCG07G015120 Citrullus lanatus HOM05D003590 ORTHO05D004290 9.9e-15 83.6 145 40.7
Eucgr.A00018 Eucalyptus grandis HOM05D003590 ORTHO05D004290 1.3e-14 83.2 145 43.4
Rhsim09G0012200 Rhododendron simsii HOM05D003590 ORTHO05D004290 1.3e-14 83.2 144 44.4
Dinv15385 Davidia involucrata HOM05D003590 ORTHO05D004290 2.9e-14 82.0 143 45.5
Gohir.A02G091600 Gossypium hirsutum HOM05D003590 ORTHO05D004290 2.9e-14 82.0 149 40.9
Lj3g0023284 Lotus japonicus HOM05D003590 ORTHO05D004290 2.9e-14 82.0 143 45.5
Ciclev10021047m.g Citrus clementina HOM05D003590 ORTHO05D004290 4.9e-14 81.3 145 43.4
Gohir.D02G109000 Gossypium hirsutum HOM05D003590 ORTHO05D004290 4.9e-14 81.3 149 39.6
PGSC0003DMG400016231 Solanum tuberosum HOM05D003590 ORTHO05D004290 4.9e-14 81.3 145 44.8
FvH4_3g16870 Fragaria vesca HOM05D003590 ORTHO05D004290 6.4e-14 80.9 144 41.0
Thecc.04G169500 Theobroma cacao HOM05D003590 ORTHO05D004290 6.4e-14 80.9 147 42.2
Duzib212G0521 Durio zibethinus HOM05D003590 ORTHO05D004290 1.1e-13 80.1 145 42.8
Nitab4.5_0004390g0060 Nicotiana tabacum HOM05D003590 ORTHO05D004290 1.1e-13 80.1 145 44.1
RcHm_v2.0_Chr5g0028111 Rosa chinensis HOM05D003590 ORTHO05D004290 1.1e-13 80.1 138 41.3
Ca_20810_v3 Cicer arietinum L. HOM05D003590 ORTHO05D004290 1.4e-13 79.7 143 44.8
arahy.Tifrunner.gnm1.ann1.YL8857 Arachis hypogaea HOM05D003590 ORTHO05D004290 1.9e-13 79.3 142 45.8
MELO3C017774.2 Cucumis melo HOM05D003590 ORTHO05D004290 3.2e-13 78.6 145 39.3
Duzib268G1650 Durio zibethinus HOM05D003590 ORTHO05D004290 3.2e-13 78.6 147 42.2
FAN19G0667 Fragaria x ananassa HOM05D003590 ORTHO05D004290 3.2e-13 78.6 137 43.1
VMungo1383G1305 Vigna mungo HOM05D003590 ORTHO05D004290 3.2e-13 78.6 140 45.0
Ah.06g195400 Amaranthus hybridus HOM05D003590 ORTHO05D004290 4.2e-13 78.2 144 41.0
CSS0039108 Camellia sinensis var. sinensis HOM05D003590 ORTHO05D004290 4.2e-13 78.2 144 42.4
Sed0008844 Sechium edule HOM05D003590 ORTHO05D004290 4.2e-13 78.2 143 39.9
CSS0008581 Camellia sinensis var. sinensis HOM05D003590 ORTHO05D004290 5.4e-13 77.8 144 42.4
Solyc11g008990.2 Solanum lycopersicum HOM05D003590 ORTHO05D004290 5.4e-13 77.8 145 44.8
Cpa.g.sc9.339 Carica papaya HOM05D003590 ORTHO05D004290 9.3e-13 77.0 90 54.4
AUR62006641 Chenopodium quinoa HOM05D003590 ORTHO05D004290 9.3e-13 77.0 144 42.4
Gorai.005G124600 Gossypium raimondii HOM05D003590 ORTHO05D004290 9.3e-13 77.0 149 39.6
CAN.G1177.3 Capsicum annuum HOM05D003590 ORTHO05D004290 1.2e-12 76.6 145 43.4
CsaV3_4G002670 Cucumis sativus L. HOM05D003590 ORTHO05D004290 1.2e-12 76.6 145 38.6
Lalb_Chr07g0192831 Lupinus albus HOM05D003590 ORTHO05D004290 1.2e-12 76.6 139 41.7
CDE08G0825 Ceratophyllum demersum HOM05D003590 ORTHO05D004290 1.6e-12 76.3 135 43.7
Sc06g0005010 Simmondsia chinensis HOM05D003590 ORTHO05D004290 1.6e-12 76.3 136 42.6
Sopen11g004770 Solanum pennellii HOM05D003590 ORTHO05D004290 1.6e-12 76.3 137 44.5
vmacro00650 Vaccinium macrocarpon HOM05D003590 ORTHO05D004290 1.6e-12 76.3 144 41.7
vmacro00679 Vaccinium macrocarpon HOM05D003590 ORTHO05D004290 2.7e-12 75.5 144 41.7
Actinidia27105 Actinidia chinensis HOM05D003590 ORTHO05D004290 3.5e-12 75.1 144 38.9
Dinv29086 Davidia involucrata HOM05D003590 ORTHO05D004290 3.5e-12 75.1 145 43.4
Peaxi162Scf00074g01833 Petunia axillaris HOM05D003590 ORTHO05D004290 4.6e-12 74.7 145 42.1
GSVIVG01019065001 Vitis vinifera HOM05D003590 ORTHO05D004290 4.6e-12 74.7 144 41.7
MBI07_g22611_MAGBIO Magnolia biondii HOM05D003590 ORTHO05D004290 6.0e-12 74.3 144 38.9
PSO339G4307 Papaver somniferum HOM05D003590 ORTHO05D004290 1.0e-11 73.6 141 41.1
PSO384G2196 Papaver somniferum HOM05D003590 ORTHO05D004290 1.7e-11 72.8 142 40.1
PGR042G3827 Punica granatum HOM05D003590 ORTHO05D004290 2.3e-11 72.4 139 40.3
Nn1g09673 Nelumbo nucifera HOM05D003590 ORTHO05D004290 3.0e-11 72.0 131 38.9
Sed0014148 Sechium edule HOM05D003590 ORTHO05D004290 3.0e-11 72.0 144 38.9
TPR.G34214 Trifolium pratense HOM05D003590 ORTHO05D004290 8.7e-11 70.5 143 41.3
MSTRG.8205 Avicennia marina HOM05D003590 ORTHO05D004290 1.1e-10 70.1 146 39.7
Manes.11G128000 Manihot esculenta HOM05D003590 ORTHO05D004290 1.1e-10 70.1 152 40.8
Medtr4g068210 Medicago truncatula HOM05D003590 ORTHO05D004290 1.1e-10 70.1 143 42.7
Nn7g37627 Nelumbo nucifera HOM05D003590 ORTHO05D004290 1.1e-10 70.1 141 41.8
AT1G65260 Arabidopsis thaliana HOM05D003590 ORTHO05D004290 1.5e-10 69.7 141 39.0
SGA_v2.0_scaffold122G33190 Striga asiatica HOM05D003590 ORTHO05D004290 1.5e-10 69.7 147 40.1
Actinidia03270 Actinidia chinensis HOM05D003590 ORTHO05D004290 2.5e-10 68.9 145 38.6
EL10Ac4g10000 Beta vulgaris HOM05D003590 ORTHO05D004290 3.3e-10 68.6 144 38.2
Psat7g208480 Pisum sativum HOM05D003590 ORTHO05D004290 5.6e-10 67.8 143 42.0
AL2G20260 Arabidopsis lyrata HOM05D003590 ORTHO05D004290 9.6e-10 67.0 140 36.4
Eucgr.B01427 Eucalyptus grandis HOM05D003590 ORTHO05D004290 9.6e-10 67.0 145 36.6
Eucgr.K00001 Eucalyptus grandis HOM05D003590 ORTHO05D004290 9.6e-10 67.0 145 36.6
Manes.04G049785 Manihot esculenta HOM05D003590 ORTHO05D004290 9.6e-10 67.0 151 40.4
THA.LOC104805702 Tarenaya hassleriana HOM05D003590 ORTHO05D004290 9.6e-10 67.0 146 39.0
CSS0013807 Camellia sinensis var. sinensis HOM05D003590 ORTHO05D004290 1.6e-09 66.2 132 40.9
Hma1.2p1_0831F.1_g225440 Hydrangea macrophylla HOM05D003590 ORTHO05D004290 3.6e-09 65.1 143 42.0
Sp5g19930 Schrenkiella parvula HOM05D003590 ORTHO05D004290 3.6e-09 65.1 140 35.0
Sabra06G0097800 Salix brachista HOM05D003590 ORTHO05D004290 4.8e-09 64.7 152 37.5
Migut.F01864 Erythranthe guttata HOM05D003590 ORTHO05D004290 8.1e-09 63.9 144 39.6
Cc09_g03870 Coffea canephora HOM05D003590 ORTHO05D004290 1.1e-08 63.5 134 37.3
HanXRQChr05g0149811 Helianthus annuus HOM05D003590 ORTHO05D004290 3.1e-08 62.0 133 37.6
HanXRQChr16g0500391 Helianthus annuus HOM05D003590 ORTHO05D004290 3.1e-08 62.0 140 35.7
SalBow6G6444 Salvia bowleyana HOM05D003590 ORTHO05D004290 4.0e-08 61.6 144 36.1
Potri.006G123600 Populus trichocarpa HOM05D003590 ORTHO05D004290 5.3e-08 61.2 153 34.6
Sabra16G0098800 Salix brachista HOM05D003590 ORTHO05D004290 5.3e-08 61.2 143 39.2
CANSAT54G1837 Cannabis sativa HOM05D003590 ORTHO05D004290 6.9e-08 60.8 133 37.6
Aqoxy2G04149 Aquilegia oxysepala HOM05D003590 ORTHO05D004290 9.0e-08 60.5 140 35.7
Carub.0006s2551 Capsella rubella HOM05D003590 ORTHO05D004290 9.0e-08 60.5 141 34.8
PSO478G1249 Papaver somniferum HOM05D003590 ORTHO05D004290 9.0e-08 60.5 132 37.9
PSO782G1591 Papaver somniferum HOM05D003590 ORTHO05D004290 9.0e-08 60.5 130 38.5
Aa31LG2G2380 Aethionema arabicum HOM05D003590 ORTHO05D004290 1.2e-07 60.1 145 35.2
CARHR056900 Cardamine hirsuta HOM05D003590 ORTHO05D004290 1.2e-07 60.1 140 35.7
Lsat_1_v5_gn_9_37260 Lactuca sativa HOM05D003590 ORTHO05D004290 1.2e-07 60.1 140 38.6
TWI36G1101 Tripterygium wilfordii HOM05D003590 ORTHO05D004290 1.2e-07 60.1 179 33.0
Hund21913 Selenicereus undatus HOM05D003590 ORTHO05D004290 1.5e-07 59.7 141 36.2
MBI17_g21475_MAGBIO Magnolia biondii HOM05D003590 ORTHO05D004290 3.4e-07 58.5 111 40.5
PGR119G1440 Punica granatum HOM05D003590 ORTHO05D004290 3.4e-07 58.5 140 37.1
Hund07359 Selenicereus undatus HOM05D003590 ORTHO05D004290 4.5e-07 58.2 134 35.1
Thhalv10018833m.g Eutrema salsugineum HOM05D003590 ORTHO05D004290 7.6e-07 57.4 140 33.6
A02p13120 Brassica napus HOM05D003590 ORTHO05D004290 9.9e-07 57.0 140 32.9
C02p21260 Brassica napus HOM05D003590 ORTHO05D004290 9.9e-07 57.0 140 32.9
BolC2t08266H Brassica oleracea HOM05D003590 ORTHO05D004290 9.9e-07 57.0 140 32.9
BcaC03g14688 Brassica carinata HOM05D003590 ORTHO05D004290 2.2e-06 55.8 140 34.3
Oeu064494.2 Olea europaea HOM05D003590 ORTHO05D004290 2.2e-06 55.8 83 47.0
BraA02t06368Z Brassica rapa HOM05D003590 ORTHO05D004290 3.8e-06 55.1 140 32.1
unitig_52.g17513 Utricularia gibba HOM05D003590 ORTHO05D004290 6.4e-06 54.3 137 33.6
AL2G21940 Arabidopsis lyrata HOM05D003590 ORTHO05D004290 8.4e-06 53.9 86 39.5


User provided reference genes

Program Settings