Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT11G1220 Cannabis sativa HOM05D004106 ORTHO05D004381 4.8e-103 377.9 193 100.0
QL02p093501 Quercus lobata HOM05D004106 ORTHO05D004381 1.0e-68 263.8 190 77.4
Potri.018G105600 Populus trichocarpa HOM05D004106 ORTHO05D004381 6.5e-68 261.2 181 76.8
Dinv08223 Davidia involucrata HOM05D004106 ORTHO05D004381 2.5e-67 259.2 187 76.5
Atru.chr7.22 Acer truncatum HOM05D004106 ORTHO05D004381 5.5e-67 258.1 174 78.2
Glyma.06G225800 Glycine max HOM05D004106 ORTHO05D004381 1.6e-66 256.5 184 72.3
TAR383G0918 Trochodendron aralioides HOM05D004106 ORTHO05D004381 1.6e-66 256.5 165 79.4
VMungo1080G0447 Vigna mungo HOM05D004106 ORTHO05D004381 1.6e-66 256.5 174 75.9
Ciclev10009489m.g Citrus clementina HOM05D004106 ORTHO05D004381 1.0e-65 253.8 173 78.6
arahy.Tifrunner.gnm1.ann1.J1V5JT Arachis hypogaea HOM05D004106 ORTHO05D004381 2.3e-65 252.7 192 72.9
ClCG06G012460 Citrullus lanatus HOM05D004106 ORTHO05D004381 2.3e-65 252.7 186 74.2
CsaV3_1G029020 Cucumis sativus L. HOM05D004106 ORTHO05D004381 2.0e-64 249.6 186 74.2
Cc06_g14830 Coffea canephora HOM05D004106 ORTHO05D004381 2.6e-64 249.2 186 73.1
TWI63G0696 Tripterygium wilfordii HOM05D004106 ORTHO05D004381 2.6e-64 249.2 168 79.8
arahy.Tifrunner.gnm1.ann1.U84FQB Arachis hypogaea HOM05D004106 ORTHO05D004381 3.3e-64 248.8 192 72.9
Glyma.12G156200 Glycine max HOM05D004106 ORTHO05D004381 9.7e-64 247.3 174 73.0
TAR626G0743 Trochodendron aralioides HOM05D004106 ORTHO05D004381 9.7e-64 247.3 186 72.6
Dinv08178 Davidia involucrata HOM05D004106 ORTHO05D004381 2.8e-63 245.7 175 76.6
Actinidia14131 Actinidia chinensis HOM05D004106 ORTHO05D004381 3.7e-63 245.4 179 77.7
Duzib168G0532 Durio zibethinus HOM05D004106 ORTHO05D004381 3.7e-63 245.4 187 73.8
Gohir.A07G027300 Gossypium hirsutum HOM05D004106 ORTHO05D004381 3.7e-63 245.4 175 76.0
Gorai.001G032700 Gossypium raimondii HOM05D004106 ORTHO05D004381 3.7e-63 245.4 175 76.0
Prupe.7G264300 Prunus persica HOM05D004106 ORTHO05D004381 4.8e-63 245.0 170 75.9
Cpa.g.sc46.167 Carica papaya HOM05D004106 ORTHO05D004381 6.3e-63 244.6 188 72.3
Phvul.005G005700 Phaseolus vulgaris HOM05D004106 ORTHO05D004381 6.3e-63 244.6 185 70.8
Lalb_Chr07g0179881 Lupinus albus HOM05D004106 ORTHO05D004381 1.1e-62 243.8 165 77.6
CSS0032495 Camellia sinensis var. sinensis HOM05D004106 ORTHO05D004381 1.8e-62 243.0 142 88.0
Eucgr.C02498 Eucalyptus grandis HOM05D004106 ORTHO05D004381 2.4e-62 242.7 190 70.0
Eucgr.C02535 Eucalyptus grandis HOM05D004106 ORTHO05D004381 5.3e-62 241.5 190 70.0
Oeu006863.1 Olea europaea HOM05D004106 ORTHO05D004381 5.3e-62 241.5 170 75.3
COL.COLO4_18821 Corchorus olitorius HOM05D004106 ORTHO05D004381 7.0e-62 241.1 185 73.0
Gohir.A05G053000 Gossypium hirsutum HOM05D004106 ORTHO05D004381 7.0e-62 241.1 186 72.6
Gohir.D05G054601 Gossypium hirsutum HOM05D004106 ORTHO05D004381 9.1e-62 240.7 174 75.3
Gorai.009G056300 Gossypium raimondii HOM05D004106 ORTHO05D004381 9.1e-62 240.7 174 75.3
TWI34G1622 Tripterygium wilfordii HOM05D004106 ORTHO05D004381 1.5e-61 240.0 168 78.6
Prupe.1G394300 Prunus persica HOM05D004106 ORTHO05D004381 2.0e-61 239.6 187 71.7
GSVIVG01023623001 Vitis vinifera HOM05D004106 ORTHO05D004381 2.0e-61 239.6 175 72.6
Sed0000106 Sechium edule HOM05D004106 ORTHO05D004381 2.6e-61 239.2 192 67.7
CiPaw.15G167000 Carya illinoinensis HOM05D004106 ORTHO05D004381 4.5e-61 238.4 190 72.1
HPP92_004701 Vanilla planifolia HOM05D004106 ORTHO05D004381 7.7e-61 237.7 167 74.3
Manes.14G144700 Manihot esculenta HOM05D004106 ORTHO05D004381 1.3e-60 236.9 192 71.4
PSO384G4038 Papaver somniferum HOM05D004106 ORTHO05D004381 1.7e-60 236.5 167 79.0
Hund02987 Selenicereus undatus HOM05D004106 ORTHO05D004381 1.7e-60 236.5 194 68.0
Lj6g0027633 Lotus japonicus HOM05D004106 ORTHO05D004381 2.9e-60 235.7 188 69.7
PSO339G2511 Papaver somniferum HOM05D004106 ORTHO05D004381 3.8e-60 235.3 166 78.3
CAN.G551.46 Capsicum annuum HOM05D004106 ORTHO05D004381 8.5e-60 234.2 156 78.8
Ca_21133_v3 Cicer arietinum L. HOM05D004106 ORTHO05D004381 8.5e-60 234.2 188 69.1
Manes.03G008200 Manihot esculenta HOM05D004106 ORTHO05D004381 1.1e-59 233.8 195 69.7
Hund25620 Selenicereus undatus HOM05D004106 ORTHO05D004381 1.1e-59 233.8 160 77.5
MSTRG.1632 Avicennia marina HOM05D004106 ORTHO05D004381 1.5e-59 233.4 164 75.6
EL10Ac2g02497 Beta vulgaris HOM05D004106 ORTHO05D004381 1.5e-59 233.4 168 74.4
Solyc12g009980.2 Solanum lycopersicum HOM05D004106 ORTHO05D004381 1.5e-59 233.4 155 80.0
PGSC0003DMG400007906 Solanum tuberosum HOM05D004106 ORTHO05D004381 1.5e-59 233.4 147 82.3
ATR0580G427 Amborella trichopoda HOM05D004106 ORTHO05D004381 3.2e-59 232.3 167 77.2
MBI15_g18237_MAGBIO Magnolia biondii HOM05D004106 ORTHO05D004381 4.2e-59 231.9 174 75.3
Sopen12g004850 Solanum pennellii HOM05D004106 ORTHO05D004381 4.2e-59 231.9 155 80.0
THA.LOC104803919 Tarenaya hassleriana HOM05D004106 ORTHO05D004381 9.4e-59 230.7 186 68.8
Duzib150G0841 Durio zibethinus HOM05D004106 ORTHO05D004381 1.6e-58 229.9 144 83.3
Lalb_Chr13g0300831 Lupinus albus HOM05D004106 ORTHO05D004381 1.6e-58 229.9 174 72.4
Medtr0380s0040 Medicago truncatula HOM05D004106 ORTHO05D004381 2.1e-58 229.6 188 68.1
Oeu048547.1 Olea europaea HOM05D004106 ORTHO05D004381 2.1e-58 229.6 167 73.7
RcHm_v2.0_Chr6g0299371 Rosa chinensis HOM05D004106 ORTHO05D004381 2.1e-58 229.6 187 70.6
TPR.G3593 Trifolium pratense HOM05D004106 ORTHO05D004381 2.7e-58 229.2 194 66.0
vmacro06074 Vaccinium macrocarpon HOM05D004106 ORTHO05D004381 2.7e-58 229.2 190 64.7
Lj4g0010746 Lotus japonicus HOM05D004106 ORTHO05D004381 3.6e-58 228.8 191 68.6
THA.LOC104819993 Tarenaya hassleriana HOM05D004106 ORTHO05D004381 4.7e-58 228.4 162 75.9
FAN27G3303 Fragaria x ananassa HOM05D004106 ORTHO05D004381 6.1e-58 228.0 134 90.3
FvH4_2g41160 Fragaria vesca HOM05D004106 ORTHO05D004381 1.4e-57 226.9 134 89.6
MD08G1056000 Malus domestica HOM05D004106 ORTHO05D004381 1.8e-57 226.5 148 81.8
MBI14_g09102_MAGBIO Magnolia biondii HOM05D004106 ORTHO05D004381 2.3e-57 226.1 173 72.3
Migut.K00317 Erythranthe guttata HOM05D004106 ORTHO05D004381 3.0e-57 225.7 187 64.7
FAN15G2986 Fragaria x ananassa HOM05D004106 ORTHO05D004381 3.0e-57 225.7 134 89.6
PGR102G1248 Punica granatum HOM05D004106 ORTHO05D004381 3.0e-57 225.7 191 66.5
Os02g0180200 Oryza sativa ssp. japonica HOM05D004106 ORTHO05D004381 5.2e-57 224.9 150 80.0
Peaxi162Scf00045g02039 Petunia axillaris HOM05D004106 ORTHO05D004381 5.2e-57 224.9 169 74.6
Medtr4g130730 Medicago truncatula HOM05D004106 ORTHO05D004381 8.8e-57 224.2 188 67.6
Sp7g28490 Schrenkiella parvula HOM05D004106 ORTHO05D004381 1.1e-56 223.8 168 73.8
CAN.G353.7 Capsicum annuum HOM05D004106 ORTHO05D004381 3.3e-56 222.2 166 73.5
Nitab4.5_0002011g0110 Nicotiana tabacum HOM05D004106 ORTHO05D004381 3.3e-56 222.2 167 74.3
HanXRQChr03g0065371 Helianthus annuus HOM05D004106 ORTHO05D004381 4.4e-56 221.9 175 69.7
Peaxi162Scf00062g00225 Petunia axillaris HOM05D004106 ORTHO05D004381 4.4e-56 221.9 147 81.0
Solyc08g006780.3 Solanum lycopersicum HOM05D004106 ORTHO05D004381 5.7e-56 221.5 166 72.9
AL4G14070 Arabidopsis lyrata HOM05D004106 ORTHO05D004381 7.4e-56 221.1 159 74.2
Nitab4.5_0003563g0010 Nicotiana tabacum HOM05D004106 ORTHO05D004381 7.4e-56 221.1 167 74.9
Sopen08g002730 Solanum pennellii HOM05D004106 ORTHO05D004381 7.4e-56 221.1 166 73.5
TPR.G24849 Trifolium pratense HOM05D004106 ORTHO05D004381 1.7e-55 219.9 188 66.5
AT4G30620 Arabidopsis thaliana HOM05D004106 ORTHO05D004381 2.2e-55 219.5 168 73.2
HanXRQChr09g0244601 Helianthus annuus HOM05D004106 ORTHO05D004381 2.2e-55 219.5 161 75.8
SGA_v2.0_scaffold4G02174 Striga asiatica HOM05D004106 ORTHO05D004381 2.2e-55 219.5 173 71.7
Lsat_1_v5_gn_7_50001 Lactuca sativa HOM05D004106 ORTHO05D004381 2.8e-55 219.2 154 76.6
PGSC0003DMG400026299 Solanum tuberosum HOM05D004106 ORTHO05D004381 2.8e-55 219.2 166 71.7
Sabra18G0090100 Salix brachista HOM05D004106 ORTHO05D004381 3.7e-55 218.8 173 68.8
A08p19160 Brassica napus HOM05D004106 ORTHO05D004381 6.3e-55 218.0 168 73.8
Sp4g02930 Schrenkiella parvula HOM05D004106 ORTHO05D004381 6.3e-55 218.0 148 79.7
TWI32G0932 Tripterygium wilfordii HOM05D004106 ORTHO05D004381 6.3e-55 218.0 138 85.5
AT2G24020 Arabidopsis thaliana HOM05D004106 ORTHO05D004381 1.1e-54 217.2 168 70.8
BraA08t33877Z Brassica rapa HOM05D004106 ORTHO05D004381 1.1e-54 217.2 147 81.6
ECA240G3283 Erigeron canadensis HOM05D004106 ORTHO05D004381 1.1e-54 217.2 179 69.3
Migut.E01458 Erythranthe guttata HOM05D004106 ORTHO05D004381 1.4e-54 216.9 164 72.0
AL7G21520 Arabidopsis lyrata HOM05D004106 ORTHO05D004381 1.8e-54 216.5 169 72.2
Carub.0004s0318 Capsella rubella HOM05D004106 ORTHO05D004381 2.4e-54 216.1 148 77.7
Thhalv10026346m.g Eutrema salsugineum HOM05D004106 ORTHO05D004381 2.4e-54 216.1 145 82.1
Psat1g022480 Pisum sativum HOM05D004106 ORTHO05D004381 3.1e-54 215.7 187 65.2
Thhalv10000343m.g Eutrema salsugineum HOM05D004106 ORTHO05D004381 4.1e-54 215.3 143 81.1
CARHR184720 Cardamine hirsuta HOM05D004106 ORTHO05D004381 5.3e-54 214.9 171 68.4
unitig_749.g13818 Utricularia gibba HOM05D004106 ORTHO05D004381 7.0e-54 214.5 179 66.5
SalBow1G1642 Salvia bowleyana HOM05D004106 ORTHO05D004381 9.1e-54 214.2 192 63.5
A09p56640 Brassica napus HOM05D004106 ORTHO05D004381 1.2e-53 213.8 188 65.4
BraA09t41055Z Brassica rapa HOM05D004106 ORTHO05D004381 1.6e-53 213.4 152 77.0
C08p39590 Brassica napus HOM05D004106 ORTHO05D004381 2.6e-53 212.6 137 82.5
BolC8t51532H Brassica oleracea HOM05D004106 ORTHO05D004381 2.6e-53 212.6 137 82.5
Aa31LG2G19880 Aethionema arabicum HOM05D004106 ORTHO05D004381 3.5e-53 212.2 172 69.2
BcaB03g12652 Brassica carinata HOM05D004106 ORTHO05D004381 3.5e-53 212.2 158 75.3
Zm00001eb206700 Zea mays HOM05D004106 ORTHO05D004381 3.5e-53 212.2 152 76.3
Carub.0007s0995 Capsella rubella HOM05D004106 ORTHO05D004381 7.7e-53 211.1 143 81.8
MELO3C010214.2 Cucumis melo HOM05D004106 ORTHO05D004381 7.7e-53 211.1 170 69.4
Psat4g009640 Pisum sativum HOM05D004106 ORTHO05D004381 1.3e-52 210.3 175 69.1
BcaC07g40965 Brassica carinata HOM05D004106 ORTHO05D004381 2.9e-52 209.1 136 80.9
MD15G1041000 Malus domestica HOM05D004106 ORTHO05D004381 5.0e-52 208.4 148 75.7
BolC3t21168H Brassica oleracea HOM05D004106 ORTHO05D004381 1.9e-51 206.5 150 77.3
Thecc.09G028700 Theobroma cacao HOM05D004106 ORTHO05D004381 3.2e-51 205.7 147 73.5
vmacro05152 Vaccinium macrocarpon HOM05D004106 ORTHO05D004381 3.2e-51 205.7 171 66.1
Actinidia23107 Actinidia chinensis HOM05D004106 ORTHO05D004381 2.7e-50 202.6 119 90.8
Ah.10g025490 Amaranthus hybridus HOM05D004106 ORTHO05D004381 2.7e-50 202.6 175 70.3
CDE02G1701 Ceratophyllum demersum HOM05D004106 ORTHO05D004381 3.6e-50 202.2 168 67.9
CDE05G2988 Ceratophyllum demersum HOM05D004106 ORTHO05D004381 4.7e-50 201.8 168 67.9
Cfa013048 Carpinus fangiana HOM05D004106 ORTHO05D004381 8.0e-50 201.1 162 71.0
Aqoxy7G02301 Aquilegia oxysepala HOM05D004106 ORTHO05D004381 4.0e-49 198.7 117 90.6
Aqoxy7G02464 Aquilegia oxysepala HOM05D004106 ORTHO05D004381 1.5e-48 196.8 155 74.8
Haze_21409 Corylus avellana HOM05D004106 ORTHO05D004381 5.7e-48 194.9 110 92.7
C03p88620 Brassica napus HOM05D004106 ORTHO05D004381 7.5e-48 194.5 143 78.3
AUR62024802 Chenopodium quinoa HOM05D004106 ORTHO05D004381 9.7e-48 194.1 117 88.9
AUR62032418 Chenopodium quinoa HOM05D004106 ORTHO05D004381 9.7e-48 194.1 117 88.9
BcaC01g01145 Brassica carinata HOM05D004106 ORTHO05D004381 8.3e-47 191.0 138 78.3
Lalb_Chr12g0198731 Lupinus albus HOM05D004106 ORTHO05D004381 5.3e-46 188.3 107 90.7
Aa31LG7G12810 Aethionema arabicum HOM05D004106 ORTHO05D004381 9.1e-46 187.6 176 62.5
Haze_19171 Corylus avellana HOM05D004106 ORTHO05D004381 1.3e-44 183.7 111 87.4
Mapoly0031s0030 Marchantia polymorpha HOM05D004106 ORTHO05D004381 2.9e-44 182.6 134 70.1
FAN20G0773 Fragaria x ananassa HOM05D004106 ORTHO05D004381 3.8e-44 182.2 134 76.1
Nn8g39925 Nelumbo nucifera HOM05D004106 ORTHO05D004381 6.5e-44 181.4 187 58.8
Sc09g0010670 Simmondsia chinensis HOM05D004106 ORTHO05D004381 2.5e-43 179.5 156 65.4
Pp3c2_35530 Physcomitrium patens HOM05D004106 ORTHO05D004381 5.5e-43 178.3 143 67.1
Nitab4.5_0002891g0090 Nicotiana tabacum HOM05D004106 ORTHO05D004381 7.2e-43 177.9 165 63.6
Nitab4.5_0008875g0050 Nicotiana tabacum HOM05D004106 ORTHO05D004381 1.6e-42 176.8 165 63.0
SMO364G0386 Selaginella moellendorffii HOM05D004106 ORTHO05D004381 2.7e-42 176.0 108 81.5
CANSAT54G0776 Cannabis sativa HOM05D004106 ORTHO05D004381 1.8e-41 173.3 145 64.1
Pp3c1_1160 Physcomitrium patens HOM05D004106 ORTHO05D004381 6.8e-41 171.4 138 68.1
Hma1.2p1_2680F.1_g326820 Hydrangea macrophylla HOM05D004106 ORTHO05D004381 2.2e-39 166.4 162 63.6
Pp3c11_2360 Physcomitrium patens HOM05D004106 ORTHO05D004381 2.8e-39 166.0 139 62.6
Zm00001eb234060 Zea mays HOM05D004106 ORTHO05D004381 4.9e-39 165.2 152 63.8
CBR_g728 Chara braunii HOM05D004106 ORTHO05D004381 1.2e-37 160.6 110 74.5
CBR_g54183 Chara braunii HOM05D004106 ORTHO05D004381 1.6e-37 160.2 108 74.1
AagrBONN_evm.TU.Sc2ySwM_228.5744 Anthoceros agrestis HOM05D004106 ORTHO05D004381 3.8e-36 155.6 115 70.4
Rhsim07G0165600 Rhododendron simsii HOM05D004106 ORTHO05D004381 3.8e-36 155.6 134 64.2
Actinidia38669 Actinidia chinensis HOM05D004106 ORTHO05D004381 1.1e-35 154.1 141 63.1
Gohir.D07G031300 Gossypium hirsutum HOM05D004106 ORTHO05D004381 5.4e-30 135.2 111 65.8
PRCOL_00004350 Prasinoderma coloniale HOM05D004106 ORTHO05D004381 6.6e-28 128.3 105 61.9
QL02p018811 Quercus lobata HOM05D004106 ORTHO05D004381 3.3e-27 125.9 86 73.3
Cre10.g458550 Chlamydomonas reinhardtii HOM05D004106 ORTHO05D004381 5.8e-24 115.2 134 48.5
BraA02t07117Z Brassica rapa HOM05D004106 ORTHO05D004381 1.3e-23 114.0 91 69.2
BcaB05g25007 Brassica carinata HOM05D004106 ORTHO05D004381 2.2e-23 113.2 91 68.1
A02p20860 Brassica napus HOM05D004106 ORTHO05D004381 1.1e-22 110.9 86 69.8
C02p32810 Brassica napus HOM05D004106 ORTHO05D004381 3.2e-22 109.4 87 71.3
BcaC03g15698 Brassica carinata HOM05D004106 ORTHO05D004381 2.0e-21 106.7 87 70.1
BolC2t09418H Brassica oleracea HOM05D004106 ORTHO05D004381 2.0e-21 106.7 87 70.1
Peaxi162Scf00387g00211 Petunia axillaris HOM05D004106 ORTHO05D004381 2.8e-18 96.3 110 53.6
SEGI_18679 Sequoiadendron giganteum HOM05D004106 ORTHO05D004381 2.1e-13 80.1 44 93.2
CARHR238490 Cardamine hirsuta HOM05D004106 ORTHO05D004381 1.7e-12 77.0 45 86.7
BcaB01g01386 Brassica carinata HOM05D004106 ORTHO05D005755 2.5e-11 73.2 45 84.4
Lsat_1_v5_gn_7_47460 Lactuca sativa HOM05D004106 ORTHO05D002137 3.6e-10 69.3 46 78.3
AagrBONN_evm.TU.Sc2ySwM_344.958 Anthoceros agrestis HOM05D010958 ORTHO05D004381 1.4e-06 57.4 82 45.1
TPR.G3534 Trifolium pratense HOM05D006248 ORTHO05D007896 2.4e-06 56.6 82 42.7


User provided reference genes

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