Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT11G1184 Cannabis sativa HOM05D003857 ORTHO05D004454 1.4e-43 179.5 112 100.0
Manes.15G060900 Manihot esculenta HOM05D003857 ORTHO05D004454 4.2e-19 98.2 87 63.2
ClCG10G004230 Citrullus lanatus HOM05D003857 ORTHO05D004454 5.5e-19 97.8 87 62.1
ClCG10G004260 Citrullus lanatus HOM05D003857 ORTHO05D004454 5.5e-19 97.8 87 62.1
Ciclev10009964m.g Citrus clementina HOM05D003857 ORTHO05D004454 3.6e-18 95.1 113 53.1
MD03G1183900 Malus domestica HOM05D003857 ORTHO05D004454 4.7e-18 94.7 86 62.8
CsaV3_3G004060 Cucumis sativus L. HOM05D003857 ORTHO05D004454 6.1e-18 94.4 85 63.5
FvH4_3g29390 Fragaria vesca HOM05D003857 ORTHO05D004454 8.0e-18 94.0 86 64.0
FAN11G0618 Fragaria x ananassa HOM05D003857 ORTHO05D004454 8.0e-18 94.0 111 54.1
FAN25G1727 Fragaria x ananassa HOM05D003857 ORTHO05D004454 8.0e-18 94.0 86 64.0
Prupe.4G242100 Prunus persica HOM05D003857 ORTHO05D004454 8.0e-18 94.0 84 64.3
FAN21G0934 Fragaria x ananassa HOM05D003857 ORTHO05D004454 1.4e-17 93.2 86 64.0
Potri.001G366900 Populus trichocarpa HOM05D003857 ORTHO05D004454 1.4e-17 93.2 86 61.6
Atru.chr2.3676 Acer truncatum HOM05D003857 ORTHO05D004454 1.8e-17 92.8 83 62.7
RcHm_v2.0_Chr5g0053811 Rosa chinensis HOM05D003857 ORTHO05D004454 1.8e-17 92.8 87 62.1
FAN16G1576 Fragaria x ananassa HOM05D003857 ORTHO05D004454 2.3e-17 92.4 86 62.8
TWI38G0553 Tripterygium wilfordii HOM05D003857 ORTHO05D004454 3.0e-17 92.0 87 63.2
MD11G1200800 Malus domestica HOM05D003857 ORTHO05D004454 4.0e-17 91.7 86 60.5
COL.COLO4_09818 Corchorus olitorius HOM05D003857 ORTHO05D004454 5.2e-17 91.3 88 58.0
Haze_09813 Corylus avellana HOM05D003857 ORTHO05D004454 6.7e-17 90.9 84 61.9
Sabra16G0240200 Salix brachista HOM05D003857 ORTHO05D004454 6.7e-17 90.9 86 61.6
Oeu014353.1 Olea europaea HOM05D003857 ORTHO05D004454 8.8e-17 90.5 86 59.3
QL08p004432 Quercus lobata HOM05D003857 ORTHO05D004454 8.8e-17 90.5 87 64.4
Manes.03G140433 Manihot esculenta HOM05D003857 ORTHO05D004454 3.3e-16 88.6 88 55.7
Manes.03G140500 Manihot esculenta HOM05D003857 ORTHO05D004454 3.3e-16 88.6 88 55.7
QL08p004552 Quercus lobata HOM05D003857 ORTHO05D004454 3.3e-16 88.6 87 63.2
Thecc.07G015100 Theobroma cacao HOM05D003857 ORTHO05D004454 4.4e-16 88.2 88 56.8
Cc05_g14870 Coffea canephora HOM05D003857 ORTHO05D004454 1.3e-15 86.7 113 48.7
Gohir.A13G133501 Gossypium hirsutum HOM05D003857 ORTHO05D004454 1.7e-15 86.3 85 61.2
Gohir.D13G136800 Gossypium hirsutum HOM05D003857 ORTHO05D004454 1.7e-15 86.3 85 61.2
Gorai.013G153300 Gossypium raimondii HOM05D003857 ORTHO05D004454 1.7e-15 86.3 85 61.2
MSTRG.13018 Avicennia marina HOM05D003857 ORTHO05D004454 2.2e-15 85.9 84 61.9
Gohir.D01G076300 Gossypium hirsutum HOM05D003857 ORTHO05D004454 2.2e-15 85.9 90 57.8
Gorai.002G099500 Gossypium raimondii HOM05D003857 ORTHO05D004454 2.2e-15 85.9 90 57.8
TAR629G0922 Trochodendron aralioides HOM05D003857 ORTHO05D004454 2.2e-15 85.9 88 54.5
Gohir.A01G091000 Gossypium hirsutum HOM05D003857 ORTHO05D004454 2.8e-15 85.5 90 57.8
PGR083G2342 Punica granatum HOM05D003857 ORTHO05D004454 3.7e-15 85.1 84 56.0
GSVIVG01003487001 Vitis vinifera HOM05D003857 ORTHO05D004454 6.3e-15 84.3 87 54.0
HanXRQChr05g0161821 Helianthus annuus HOM05D003857 ORTHO05D004454 8.2e-15 84.0 86 58.1
Aqoxy1G04245 Aquilegia oxysepala HOM05D003857 ORTHO05D004454 1.1e-14 83.6 106 51.9
Nitab4.5_0000461g0260 Nicotiana tabacum HOM05D003857 ORTHO05D004454 1.1e-14 83.6 84 53.6
Nn1g07497 Nelumbo nucifera HOM05D003857 ORTHO05D004454 2.4e-14 82.4 86 53.5
arahy.Tifrunner.gnm1.ann1.QWC3QU Arachis hypogaea HOM05D003857 ORTHO05D004454 3.1e-14 82.0 84 57.1
arahy.Tifrunner.gnm1.ann1.Y3WDI1 Arachis hypogaea HOM05D003857 ORTHO05D004454 3.1e-14 82.0 84 57.1
Sc03g0011180 Simmondsia chinensis HOM05D003857 ORTHO05D004454 3.1e-14 82.0 83 62.7
CAN.G337.6 Capsicum annuum HOM05D003857 ORTHO05D004454 4.1e-14 81.6 86 58.1
Hma1.2p1_0889F.1_g232820 Hydrangea macrophylla HOM05D003857 ORTHO05D004454 4.1e-14 81.6 84 57.1
Sed0010782 Sechium edule HOM05D003857 ORTHO05D004454 4.1e-14 81.6 81 59.3
Nitab4.5_0006886g0010 Nicotiana tabacum HOM05D003857 ORTHO05D004454 5.3e-14 81.3 84 52.4
EL10Ac4g07592 Beta vulgaris HOM05D003857 ORTHO05D004454 7.0e-14 80.9 88 55.7
SalBow8G3453 Salvia bowleyana HOM05D003857 ORTHO05D004454 7.0e-14 80.9 86 57.0
MSTRG.14482 Avicennia marina HOM05D003857 ORTHO05D004454 9.1e-14 80.5 82 56.1
AUR62036444 Chenopodium quinoa HOM05D003857 ORTHO05D004454 9.1e-14 80.5 86 53.5
Sopen07g033670 Solanum pennellii HOM05D003857 ORTHO05D004454 9.1e-14 80.5 86 55.8
vmacro22708 Vaccinium macrocarpon HOM05D003857 ORTHO05D004454 1.2e-13 80.1 83 56.6
Hund01891 Selenicereus undatus HOM05D003857 ORTHO05D004454 1.6e-13 79.7 84 54.8
DCAR_002236 Daucus carota HOM05D003857 ORTHO05D004454 2.0e-13 79.3 84 50.0
PGSC0003DMG400022174 Solanum tuberosum HOM05D003857 ORTHO05D004454 2.0e-13 79.3 119 47.9
Solyc07g065460.1 Solanum lycopersicum HOM05D003857 ORTHO05D004454 2.7e-13 79.0 120 48.3
Rhsim06G0228800 Rhododendron simsii HOM05D003857 ORTHO05D004454 3.5e-13 78.6 86 53.5
Oeu041436.1 Olea europaea HOM05D003857 ORTHO05D004454 1.3e-12 76.6 89 50.6
CiPaw.12G137500 Carya illinoinensis HOM05D003857 ORTHO05D004454 2.2e-12 75.9 87 50.6
SGA_v2.0_scaffold8G04405 Striga asiatica HOM05D003857 ORTHO05D004454 2.2e-12 75.9 112 46.4
AUR62017087 Chenopodium quinoa HOM05D003857 ORTHO05D004454 2.9e-12 75.5 79 54.4
Sc21g0003640 Simmondsia chinensis HOM05D003857 ORTHO05D004454 2.9e-12 75.5 91 56.0
TPR.G8580 Trifolium pratense HOM05D003857 ORTHO05D004454 3.8e-12 75.1 84 51.2
Lalb_Chr15g0088131 Lupinus albus HOM05D003857 ORTHO05D004454 5.0e-12 74.7 87 44.8
A01p40370 Brassica napus HOM05D003857 ORTHO05D004454 6.5e-12 74.3 93 51.6
BraA01t04072Z Brassica rapa HOM05D003857 ORTHO05D004454 6.5e-12 74.3 93 51.6
Medtr5g095660 Medicago truncatula HOM05D003857 ORTHO05D004454 6.5e-12 74.3 84 51.2
Phvul.008G278500 Phaseolus vulgaris HOM05D003857 ORTHO05D004454 6.5e-12 74.3 90 53.3
Rhsim13G0142200 Rhododendron simsii HOM05D003857 ORTHO05D004454 6.5e-12 74.3 86 51.2
THA.LOC104810291 Tarenaya hassleriana HOM05D003857 ORTHO05D004454 8.5e-12 73.9 96 52.1
Actinidia05015 Actinidia chinensis HOM05D003857 ORTHO05D004454 1.1e-11 73.6 86 51.2
PSO210G4960 Papaver somniferum HOM05D003857 ORTHO05D004454 1.1e-11 73.6 93 49.5
BolC1t05138H Brassica oleracea HOM05D003857 ORTHO05D004454 1.5e-11 73.2 93 50.5
CARHR087760 Cardamine hirsuta HOM05D003857 ORTHO05D004454 1.5e-11 73.2 90 50.0
Migut.H01760 Erythranthe guttata HOM05D003857 ORTHO05D004454 1.5e-11 73.2 83 54.2
A03p49780 Brassica napus HOM05D003857 ORTHO05D004454 1.9e-11 72.8 87 46.0
C01p51910 Brassica napus HOM05D003857 ORTHO05D004454 1.9e-11 72.8 93 50.5
BraA03t14073Z Brassica rapa HOM05D003857 ORTHO05D004454 1.9e-11 72.8 87 46.0
Glyma.08G328700 Glycine max HOM05D003857 ORTHO05D004454 1.9e-11 72.8 90 52.2
Thhalv10022264m.g Eutrema salsugineum HOM05D003857 ORTHO05D004454 3.2e-11 72.0 90 47.8
AL3G24920 Arabidopsis lyrata HOM05D003857 ORTHO05D004454 5.5e-11 71.2 91 48.4
C07p47840 Brassica napus HOM05D003857 ORTHO05D004454 5.5e-11 71.2 84 46.4
BolC7t45306H Brassica oleracea HOM05D003857 ORTHO05D004454 5.5e-11 71.2 84 46.4
Haze_07004 Corylus avellana HOM05D003857 ORTHO05D004454 5.5e-11 71.2 87 43.7
Glyma.18G078100 Glycine max HOM05D003857 ORTHO05D004454 5.5e-11 71.2 90 51.1
PSO210G1156 Papaver somniferum HOM05D003857 ORTHO05D004454 5.5e-11 71.2 93 48.4
Potri.006G017900 Populus trichocarpa HOM05D003857 ORTHO05D004454 5.5e-11 71.2 87 48.3
DCAR_030845 Daucus carota HOM05D003857 ORTHO05D004454 7.2e-11 70.9 84 44.0
SGA_v2.0_scaffold42G15994 Striga asiatica HOM05D003857 ORTHO05D004454 1.2e-10 70.1 85 55.3
Carub.0003s1252 Capsella rubella HOM05D003857 ORTHO05D004454 1.6e-10 69.7 91 47.3
Sp7g14930 Schrenkiella parvula HOM05D003857 ORTHO05D004454 1.6e-10 69.7 87 44.8
TPR.G10580 Trifolium pratense HOM05D003857 ORTHO05D004454 2.1e-10 69.3 86 45.3
AT4G16400 Arabidopsis thaliana HOM05D003857 ORTHO05D004454 2.7e-10 68.9 102 41.2
MBI16_g22432_MAGBIO Magnolia biondii HOM05D003857 ORTHO05D004454 2.7e-10 68.9 84 47.6
Cpa.g.c35467.2 Carica papaya HOM05D003857 ORTHO05D004454 3.6e-10 68.6 88 44.3
BcaB06g25481 Brassica carinata HOM05D003857 ORTHO05D004454 4.7e-10 68.2 90 45.6
A05p36390 Brassica napus HOM05D003857 ORTHO05D004454 6.1e-10 67.8 90 45.6
BraA05t22439Z Brassica rapa HOM05D003857 ORTHO05D004454 6.1e-10 67.8 90 45.6
Nn1g03204 Nelumbo nucifera HOM05D003857 ORTHO05D004454 6.1e-10 67.8 80 51.2
Thhalv10027070m.g Eutrema salsugineum HOM05D003857 ORTHO05D004454 8.0e-10 67.4 87 43.7
Glyma.02G299800 Glycine max HOM05D003857 ORTHO05D004454 1.0e-09 67.0 91 47.3
Glyma.09G013000 Glycine max HOM05D003857 ORTHO05D004454 1.0e-09 67.0 86 44.2
Gohir.D06G162600 Gossypium hirsutum HOM05D003857 ORTHO05D004454 1.0e-09 67.0 89 46.1
Gorai.010G189800 Gossypium raimondii HOM05D003857 ORTHO05D004454 1.0e-09 67.0 89 46.1
Manes.08G070300 Manihot esculenta HOM05D003857 ORTHO05D004454 1.0e-09 67.0 90 38.9
Aa31LG8G380 Aethionema arabicum HOM05D003857 ORTHO05D004454 1.4e-09 66.6 90 44.4
AT3G13175 Arabidopsis thaliana HOM05D003857 ORTHO05D004454 1.4e-09 66.6 91 46.2
BolC5t34151H Brassica oleracea HOM05D003857 ORTHO05D004454 1.4e-09 66.6 89 47.2
Gohir.A06G156300 Gossypium hirsutum HOM05D003857 ORTHO05D004454 1.4e-09 66.6 89 46.1
THA.LOC104815698 Tarenaya hassleriana HOM05D003857 ORTHO05D004454 1.4e-09 66.6 96 50.0
Thecc.06G238500 Theobroma cacao HOM05D003857 ORTHO05D004454 1.4e-09 66.6 86 43.0
BraA01t02029Z Brassica rapa HOM05D003857 ORTHO05D004454 1.8e-09 66.2 87 42.5
Sp3g11350 Schrenkiella parvula HOM05D003857 ORTHO05D004454 1.8e-09 66.2 90 46.7
BcaC05g29205 Brassica carinata HOM05D003857 ORTHO05D004454 2.3e-09 65.9 90 44.4
BcaNung00200 Brassica carinata HOM05D003857 ORTHO05D004454 2.3e-09 65.9 87 41.4
C05p54780 Brassica napus HOM05D003857 ORTHO05D004454 2.3e-09 65.9 90 44.4
Phvul.006G056400 Phaseolus vulgaris HOM05D003857 ORTHO05D004454 2.3e-09 65.9 88 50.0
arahy.Tifrunner.gnm1.ann1.J6PND3 Arachis hypogaea HOM05D003857 ORTHO05D004454 3.0e-09 65.5 90 40.0
Cc09_g00510 Coffea canephora HOM05D003857 ORTHO05D004454 3.0e-09 65.5 84 46.4
Glyma.15G117900 Glycine max HOM05D003857 ORTHO05D004454 3.0e-09 65.5 86 44.2
AL7G38610 Arabidopsis lyrata HOM05D003857 ORTHO05D004454 4.0e-09 65.1 87 41.4
arahy.Tifrunner.gnm1.ann1.A9XG53 Arachis hypogaea HOM05D003857 ORTHO05D004454 4.0e-09 65.1 90 40.0
Phvul.006G140400 Phaseolus vulgaris HOM05D003857 ORTHO05D004454 4.0e-09 65.1 86 41.9
Potri.016G007101 Populus trichocarpa HOM05D003857 ORTHO05D004454 4.0e-09 65.1 88 42.0
ATR0827G129 Amborella trichopoda HOM05D003857 ORTHO05D004454 5.2e-09 64.7 83 43.4
A01p21200 Brassica napus HOM05D003857 ORTHO05D004454 5.2e-09 64.7 87 42.5
BraA08t33236Z Brassica rapa HOM05D003857 ORTHO05D004454 5.2e-09 64.7 87 41.4
A08p12220 Brassica napus HOM05D003857 ORTHO05D004454 6.8e-09 64.3 87 41.4
Carub.0007s2513 Capsella rubella HOM05D003857 ORTHO05D004454 1.2e-08 63.5 81 43.2
Duzib192G0644 Durio zibethinus HOM05D003857 ORTHO05D004454 1.2e-08 63.5 82 45.1
BolC1t02594H Brassica oleracea HOM05D003857 ORTHO05D004454 2.0e-08 62.8 87 40.2
Atru.chr1.2307 Acer truncatum HOM05D003857 ORTHO05D004454 2.6e-08 62.4 86 44.2
C01p26490 Brassica napus HOM05D003857 ORTHO05D004454 2.6e-08 62.4 88 44.3
Sabra16G0011900 Salix brachista HOM05D003857 ORTHO05D004454 2.6e-08 62.4 91 39.6
LjContig00081g0000031 Lotus japonicus HOM05D003857 ORTHO05D004454 3.4e-08 62.0 84 44.0
BcaC07g37984 Brassica carinata HOM05D003857 ORTHO05D004454 4.4e-08 61.6 81 42.0
BolC8t48365H Brassica oleracea HOM05D003857 ORTHO05D004454 4.4e-08 61.6 81 42.0
Lalb_Chr17g0348931 Lupinus albus HOM05D003857 ORTHO05D004454 4.4e-08 61.6 90 44.4
Sabra06G0013000 Salix brachista HOM05D003857 ORTHO05D004454 7.5e-08 60.8 87 41.4
Aa31LG2G12460 Aethionema arabicum HOM05D003857 ORTHO05D004454 9.8e-08 60.5 83 43.4
Lj4g0009185 Lotus japonicus HOM05D003857 ORTHO05D004454 9.8e-08 60.5 82 42.7
MD00G1056900 Malus domestica HOM05D003857 ORTHO05D004454 1.3e-07 60.1 86 37.2
Rhsim04G0013000 Rhododendron simsii HOM05D003857 ORTHO05D004454 1.3e-07 60.1 85 47.1
Ciclev10017306m.g Citrus clementina HOM05D003857 ORTHO05D004454 1.7e-07 59.7 89 40.4
Phvul.003G085900 Phaseolus vulgaris HOM05D003857 ORTHO05D004454 2.8e-07 58.9 88 39.8
RcHm_v2.0_Chr5g0000661 Rosa chinensis HOM05D003857 ORTHO05D004454 2.8e-07 58.9 86 38.4
Glyma.07G267300 Glycine max HOM05D003857 ORTHO05D004454 3.7e-07 58.5 88 39.8
Actinidia35399 Actinidia chinensis HOM05D003857 ORTHO05D004454 6.3e-07 57.8 63 54.0
Prupe.4G005500 Prunus persica HOM05D003857 ORTHO05D004454 1.4e-06 56.6 85 40.0
CiPaw.09G107600 Carya illinoinensis HOM05D003857 ORTHO05D004454 7.0e-06 54.3 86 38.4
FvH4_3g00490 Fragaria vesca HOM05D003857 ORTHO05D004454 9.1e-06 53.9 87 36.8


User provided reference genes

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