Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT11G1129 Cannabis sativa HOM05D004893 ORTHO05D006320 0.0e+00 1641.7 820 100.0
TAR627G1078 Trochodendron aralioides HOM05D004893 ORTHO05D006320 0.0e+00 1082.8 815 65.0
Prupe.1G084200 Prunus persica HOM05D004893 ORTHO05D006320 0.0e+00 1081.6 821 66.6
Ciclev10007405m.g Citrus clementina HOM05D004893 ORTHO05D006320 5.6e-312 1074.7 821 65.5
QL02p098221 Quercus lobata HOM05D004893 ORTHO05D006320 5.6e-312 1074.7 816 65.2
Cfa013310 Carpinus fangiana HOM05D004893 ORTHO05D006320 1.1e-311 1073.2 826 65.3
Cfa010313 Carpinus fangiana HOM05D004893 ORTHO05D006320 1.1e-311 1072.8 826 65.0
Potri.006G166500 Populus trichocarpa HOM05D004893 ORTHO05D006320 2.5e-310 1068.5 812 65.1
MD13G1251600 Malus domestica HOM05D004893 ORTHO05D006320 2.1e-309 1065.4 817 65.4
Manes.06G023100 Manihot esculenta HOM05D004893 ORTHO05D006320 5.2e-308 1060.8 819 64.0
Hma1.2p1_0321F.1_g124570 Hydrangea macrophylla HOM05D004893 ORTHO05D006320 2.0e-307 1058.9 816 63.1
Duzib150G0781 Durio zibethinus HOM05D004893 ORTHO05D006320 1.7e-306 1055.8 813 64.1
RcHm_v2.0_Chr4g0401591 Rosa chinensis HOM05D004893 ORTHO05D006320 2.8e-306 1055.0 816 64.3
FAN22G1078 Fragaria x ananassa HOM05D004893 ORTHO05D006320 4.9e-306 1054.3 819 64.7
ClCG06G013450 Citrullus lanatus HOM05D004893 ORTHO05D006320 6.3e-306 1053.9 819 64.6
Thecc.09G175700 Theobroma cacao HOM05D004893 ORTHO05D006320 6.3e-306 1053.9 813 64.5
FAN12G2097 Fragaria x ananassa HOM05D004893 ORTHO05D006320 2.4e-305 1052.0 815 64.4
FAN07G0898 Fragaria x ananassa HOM05D004893 ORTHO05D006320 1.6e-304 1049.3 823 63.8
CSS0008978 Camellia sinensis var. sinensis HOM05D004893 ORTHO05D006320 1.0e-303 1046.6 817 63.3
CSS0040034 Camellia sinensis var. sinensis HOM05D004893 ORTHO05D006320 1.0e-303 1046.6 817 63.3
FvH4_4g07920 Fragaria vesca HOM05D004893 ORTHO05D006320 1.0e-303 1046.6 815 64.2
Gohir.D05G004900 Gossypium hirsutum HOM05D004893 ORTHO05D006320 6.6e-303 1043.9 816 63.4
Potri.018G091100 Populus trichocarpa HOM05D004893 ORTHO05D006320 8.6e-303 1043.5 824 63.3
Gohir.A05G004264 Gossypium hirsutum HOM05D004893 ORTHO05D006320 1.1e-302 1043.1 816 63.1
Sabra06G0128100 Salix brachista HOM05D004893 ORTHO05D006320 1.5e-302 1042.7 876 59.8
Atru.chr7.881 Acer truncatum HOM05D004893 ORTHO05D006320 7.3e-302 1040.4 831 63.4
CsaV3_1G031710 Cucumis sativus L. HOM05D004893 ORTHO05D006320 1.6e-301 1039.3 818 63.7
Gorai.009G004800 Gossypium raimondii HOM05D004893 ORTHO05D006320 1.6e-301 1039.3 816 63.0
GSVIVG01030738001 Vitis vinifera HOM05D004893 ORTHO05D006320 1.4e-300 1036.2 819 63.1
PGR044G2140 Punica granatum HOM05D004893 ORTHO05D006320 1.8e-297 1025.8 812 63.9
TWI34G0813 Tripterygium wilfordii HOM05D004893 ORTHO05D006320 3.2e-297 1025.0 814 61.7
Sed0012025 Sechium edule HOM05D004893 ORTHO05D006320 5.4e-297 1024.2 818 62.6
FAN17G0276 Fragaria x ananassa HOM05D004893 ORTHO05D006320 7.0e-297 1023.8 878 59.9
MELO3C017452.2 Cucumis melo HOM05D004893 ORTHO05D006320 3.3e-294 1015.0 818 63.2
Sed0012855 Sechium edule HOM05D004893 ORTHO05D006320 7.3e-294 1013.8 819 62.6
Eucgr.C02353 Eucalyptus grandis HOM05D004893 ORTHO05D006320 3.6e-293 1011.5 822 62.0
SalBow8G3700 Salvia bowleyana HOM05D004893 ORTHO05D006320 2.2e-290 1002.3 810 61.2
MSTRG.16114 Avicennia marina HOM05D004893 ORTHO05D006320 8.3e-290 1000.3 823 60.1
Lj4g0004814 Lotus japonicus HOM05D004893 ORTHO05D006320 1.9e-289 999.2 811 61.2
Rhsim13G0225800 Rhododendron simsii HOM05D004893 ORTHO05D006320 4.1e-289 998.0 851 59.3
Haze_03433 Corylus avellana HOM05D004893 ORTHO05D006320 1.0e-287 993.4 832 61.4
Atru.chr13.1778 Acer truncatum HOM05D004893 ORTHO05D006320 2.3e-287 992.3 791 62.8
Nn7g38118 Nelumbo nucifera HOM05D004893 ORTHO05D006320 3.9e-287 991.5 813 59.8
Lalb_Chr07g0180551 Lupinus albus HOM05D004893 ORTHO05D006320 1.1e-286 989.9 821 61.5
HanXRQChr09g0273501 Helianthus annuus HOM05D004893 ORTHO05D006320 2.5e-286 988.8 812 59.7
vmacro21776 Vaccinium macrocarpon HOM05D004893 ORTHO05D006320 2.3e-284 982.2 822 59.0
DCAR_013745 Daucus carota HOM05D004893 ORTHO05D006320 6.8e-284 980.7 811 59.8
VMungo1215G1808 Vigna mungo HOM05D004893 ORTHO05D006320 8.9e-284 980.3 813 60.6
Peaxi162Scf00452g00844 Petunia axillaris HOM05D004893 ORTHO05D006320 4.4e-283 978.0 812 60.1
ECA240G4652 Erigeron canadensis HOM05D004893 ORTHO05D006320 7.5e-283 977.2 813 58.3
EL10Ac6g14738 Beta vulgaris HOM05D004893 ORTHO05D006320 2.4e-281 972.2 818 59.5
AT2G18900 Arabidopsis thaliana HOM05D004893 ORTHO05D006320 6.6e-279 964.1 827 58.3
Carub.0003s3314 Capsella rubella HOM05D004893 ORTHO05D006320 7.3e-278 960.7 828 58.2
arahy.Tifrunner.gnm1.ann1.B5GTII Arachis hypogaea HOM05D004893 ORTHO05D006320 1.2e-277 959.9 811 59.9
AL3G53020 Arabidopsis lyrata HOM05D004893 ORTHO05D006320 3.6e-277 958.4 827 58.0
Sp3g32370 Schrenkiella parvula HOM05D004893 ORTHO05D006320 3.1e-276 955.3 818 58.2
Lj8C187G7 Lonicera japonica HOM05D004893 ORTHO05D006320 4.0e-276 954.9 835 60.0
Aqoxy3G03036 Aquilegia oxysepala HOM05D004893 ORTHO05D006320 3.8e-274 948.3 814 59.0
BcaC06g36488 Brassica carinata HOM05D004893 ORTHO05D006320 8.4e-274 947.2 813 57.7
A07p01760 Brassica napus HOM05D004893 ORTHO05D006320 1.9e-273 946.0 813 58.3
Thhalv10022562m.g Eutrema salsugineum HOM05D004893 ORTHO05D006320 1.9e-273 946.0 832 57.8
THA.LOC104803489 Tarenaya hassleriana HOM05D004893 ORTHO05D006320 2.4e-273 945.7 816 57.8
Phvul.003G144100 Phaseolus vulgaris HOM05D004893 ORTHO05D006320 4.1e-273 944.9 813 59.3
C07p03690 Brassica napus HOM05D004893 ORTHO05D006320 7.1e-273 944.1 813 57.6
BraA07t27976Z Brassica rapa HOM05D004893 ORTHO05D006320 7.1e-273 944.1 821 57.9
Ah.09g231700 Amaranthus hybridus HOM05D004893 ORTHO05D006320 1.6e-272 943.0 822 58.2
Ca_21236_v3 Cicer arietinum L. HOM05D004893 ORTHO05D006320 2.1e-272 942.6 810 57.8
BolC7t40765H Brassica oleracea HOM05D004893 ORTHO05D006320 2.7e-272 942.2 813 57.4
PSO063G4841 Papaver somniferum HOM05D004893 ORTHO05D006320 6.0e-272 941.0 810 58.8
COL.COLO4_37741 Corchorus olitorius HOM05D004893 ORTHO05D006320 3.0e-271 938.7 838 57.8
Solyc07g066410.4 Solanum lycopersicum HOM05D004893 ORTHO05D006320 2.5e-270 935.6 813 58.1
PSO782G3725 Papaver somniferum HOM05D004893 ORTHO05D006320 3.3e-270 935.3 810 58.3
Glyma.17G062200 Glycine max HOM05D004893 ORTHO05D006320 7.3e-270 934.1 815 59.6
Psat4g012800 Pisum sativum HOM05D004893 ORTHO05D006320 7.3e-270 934.1 810 57.4
Glyma.13G097400 Glycine max HOM05D004893 ORTHO05D006320 2.1e-269 932.6 814 59.2
CARHR109460 Cardamine hirsuta HOM05D004893 ORTHO05D006320 4.7e-269 931.4 831 56.7
arahy.Tifrunner.gnm1.ann1.48BVGN Arachis hypogaea HOM05D004893 ORTHO05D006320 6.2e-269 931.0 816 58.7
Sopen07g034580 Solanum pennellii HOM05D004893 ORTHO05D006320 3.1e-268 928.7 816 57.4
TPR.G5437 Trifolium pratense HOM05D004893 ORTHO05D006320 1.5e-267 926.4 811 57.1
Nitab4.5_0008437g0020 Nicotiana tabacum HOM05D004893 ORTHO05D006320 3.4e-267 925.2 823 57.6
Cc05_g16000 Coffea canephora HOM05D004893 ORTHO05D006320 7.6e-267 924.1 815 57.5
Lsat_1_v5_gn_7_72221 Lactuca sativa HOM05D004893 ORTHO05D006320 1.3e-266 923.3 823 58.1
Aa31LG8G15990 Aethionema arabicum HOM05D004893 ORTHO05D006320 2.2e-266 922.5 823 56.5
Medtr4g127820 Medicago truncatula HOM05D004893 ORTHO05D006320 9.3e-265 917.1 810 56.9
HPP92_012201 Vanilla planifolia HOM05D004893 ORTHO05D006320 1.9e-249 866.3 813 53.3
BcaB03g16682 Brassica carinata HOM05D004893 ORTHO05D006320 2.4e-249 865.9 812 53.8
AUR62042215 Chenopodium quinoa HOM05D004893 ORTHO05D006320 1.9e-246 856.3 819 54.2
CDE08G1653 Ceratophyllum demersum HOM05D004893 ORTHO05D006320 2.0e-243 846.3 815 53.7
Migut.M01562 Erythranthe guttata HOM05D004893 ORTHO05D006320 1.0e-242 844.0 814 53.4
CiPaw.08G035400 Carya illinoinensis HOM05D004893 ORTHO05D006320 2.5e-241 839.3 578 70.1
ATR1098G135 Amborella trichopoda HOM05D004893 ORTHO05D006320 1.5e-238 830.1 826 53.4
Nitab4.5_0001749g0080 Nicotiana tabacum HOM05D004893 ORTHO05D006320 9.7e-238 827.4 829 53.0
Zm00001eb031520 Zea mays HOM05D004893 ORTHO05D006320 2.1e-237 826.2 814 51.1
Sc12g0007760 Simmondsia chinensis HOM05D004893 ORTHO05D006320 1.4e-233 813.5 625 61.4
AUR62033061 Chenopodium quinoa HOM05D004893 ORTHO05D006320 3.3e-230 802.4 814 52.0
Os12g0609800 Oryza sativa ssp. japonica HOM05D004893 ORTHO05D006320 2.2e-229 799.7 810 50.0
Hund06466 Selenicereus undatus HOM05D004893 ORTHO05D006320 3.7e-229 798.9 753 55.1
SGA_v2.0_scaffold186G40224 Striga asiatica HOM05D004893 ORTHO05D006320 6.9e-220 768.1 889 48.0
unitig_748.g7834 Utricularia gibba HOM05D004893 ORTHO05D006320 2.8e-213 746.1 820 48.5
Actinidia07346 Actinidia chinensis HOM05D004893 ORTHO05D006320 7.2e-209 731.5 580 60.5
SEGI_38878 Sequoiadendron giganteum HOM05D004893 ORTHO05D006320 5.8e-182 642.1 824 43.6
AT3G26480 Arabidopsis thaliana HOM05D004893 ORTHO05D006320 5.6e-177 625.5 824 41.7
AL7G19230 Arabidopsis lyrata HOM05D004893 ORTHO05D006320 6.2e-176 622.1 825 42.8
Thhalv10024453m.g Eutrema salsugineum HOM05D004893 ORTHO05D006320 1.2e-174 617.8 860 40.8
Dinv42517 Davidia involucrata HOM05D004893 ORTHO05D006320 2.6e-174 616.7 462 64.9
C01p06460 Brassica napus HOM05D004893 ORTHO05D006320 3.2e-164 583.2 831 41.5
MD16G1255900 Malus domestica HOM05D004893 ORTHO05D006320 4.7e-152 542.7 586 50.2
BolC1t00640H Brassica oleracea HOM05D004893 ORTHO05D006320 1.1e-151 541.6 814 39.8
Mapoly0156s0021 Marchantia polymorpha HOM05D004893 ORTHO05D006320 1.1e-148 531.6 853 37.4
MBI02_g12652_MAGBIO Magnolia biondii HOM05D004893 ORTHO05D006320 5.8e-142 509.2 477 57.0
Carub.0007s0802 Capsella rubella HOM05D004893 ORTHO05D006320 6.4e-141 505.8 683 41.1
Pp3c7_4120 Physcomitrium patens HOM05D004893 ORTHO05D006320 7.9e-139 498.8 853 37.0
AagrBONN_evm.TU.Sc2ySwM_228.3065 Anthoceros agrestis HOM05D004893 ORTHO05D006320 4.3e-137 493.0 833 36.9
BcaB07g31639 Brassica carinata HOM05D004893 ORTHO05D006320 1.4e-135 488.0 825 39.2
BcaC09g52044 Brassica carinata HOM05D004893 ORTHO05D006320 2.5e-129 467.2 825 36.8
Cpa.g.sc523.1 Carica papaya HOM05D004893 ORTHO05D006320 6.2e-128 462.6 339 64.0
SMO356G0292 Selaginella moellendorffii HOM05D004893 ORTHO05D006320 4.5e-126 456.4 847 34.8
CANSAT11G1181 Cannabis sativa HOM05D004893 ORTHO05D006320 1.4e-106 391.7 210 95.2
Oeu016137.1 Olea europaea HOM05D004893 ORTHO05D001543 2.2e-96 357.8 391 48.8
CBR_g49376 Chara braunii HOM05D004893 ORTHO05D006320 5.3e-95 353.2 757 30.5
CARHR240500 Cardamine hirsuta HOM05D004893 ORTHO05D006320 2.9e-85 320.9 409 42.3
Cre04.g215350 Chlamydomonas reinhardtii HOM05D004893 ORTHO05D006320 5.8e-65 253.4 723 28.8
RcHm_v2.0_Chr4g0401681 Rosa chinensis HOM05D004893 ORTHO05D006320 6.4e-64 250.0 156 71.8
BcaC04g22880 Brassica carinata HOM05D004893 ORTHO05D006320 1.5e-57 228.8 272 46.7
BolC9t54332H Brassica oleracea HOM05D004893 ORTHO05D006320 1.7e-56 225.3 271 46.5
C09p14300 Brassica napus HOM05D004893 ORTHO05D006320 2.4e-55 221.5 271 46.1
PRCOL_00005731 Prasinoderma coloniale HOM05D004893 ORTHO05D006320 1.6e-51 208.8 849 24.7
Dinv42518 Davidia involucrata HOM05D004893 ORTHO05D006320 2.4e-47 194.9 194 53.6
MBI02_g33733_MAGBIO Magnolia biondii HOM05D004893 ORTHO05D006320 5.1e-45 187.2 157 60.5
MCO01G002 Micromonas commoda HOM05D004893 ORTHO05D006320 1.2e-41 176.0 706 26.9
SHI02896 Sapria himalayana HOM05D004893 ORTHO05D006320 3.1e-34 151.4 104 67.3
RcHm_v2.0_Chr4g0401691 Rosa chinensis HOM05D004893 ORTHO05D006320 7.1e-31 140.2 140 52.1
Cpa.g.sc95.47 Carica papaya HOM05D004893 ORTHO05D006320 1.6e-27 129.0 136 55.1
Glyma.11G074200 Glycine max HOM05D004893 ORTHO05D006320 4.3e-20 104.4 97 54.6
BolC9t54333H Brassica oleracea HOM05D004893 ORTHO05D006320 4.5e-17 94.4 63 68.3
BraA09t36855Z Brassica rapa HOM05D004893 ORTHO05D006320 8.4e-16 90.1 116 42.2
A09p12110 Brassica napus HOM05D004893 ORTHO05D006320 4.2e-15 87.8 116 42.2
EL10Ac6g14737 Beta vulgaris HOM05D004893 ORTHO05D006320 3.5e-14 84.7 67 64.2
Cfa026329 Carpinus fangiana HOM05D004893 ORTHO05D006320 1.5e-12 79.3 90 42.2
MBI12_g20565_MAGBIO Magnolia biondii HOM05D004893 ORTHO05D006320 1.4e-10 72.8 65 58.5
Lsat_1_v5_gn_5_51440 Lactuca sativa HOM05D004893 ORTHO05D048382 2.9e-08 65.1 94 43.6
arahy.Tifrunner.gnm1.ann1.F8045A Arachis hypogaea HOM05D062897 ORTHO05D023720 5.0e-08 64.3 45 66.7
arahy.Tifrunner.gnm1.ann1.09RZEI Arachis hypogaea HOM05D004893 ORTHO05D006320 1.9e-07 62.4 46 58.7
arahy.Tifrunner.gnm1.ann1.BHNU0I Arachis hypogaea HOM05D004893 ORTHO05D006320 2.5e-07 62.0 46 60.9


User provided reference genes

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