Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT11G1104 Cannabis sativa HOM05D005029 ORTHO05D006052 7.6e-161 570.5 295 100.0
Haze_22015 Corylus avellana HOM05D005029 ORTHO05D006052 7.0e-106 387.9 303 72.6
Cfa013448 Carpinus fangiana HOM05D005029 ORTHO05D006052 3.9e-104 382.1 304 72.0
Dinv41171 Davidia involucrata HOM05D005029 ORTHO05D006052 1.1e-98 364.0 301 69.4
CiPaw.08G032800 Carya illinoinensis HOM05D005029 ORTHO05D006052 9.2e-98 360.9 313 66.5
CiPaw.07G196600 Carya illinoinensis HOM05D005029 ORTHO05D006052 2.8e-94 349.4 300 68.0
Gohir.D13G213100 Gossypium hirsutum HOM05D005029 ORTHO05D006052 1.8e-93 346.7 296 67.9
Gorai.013G243400 Gossypium raimondii HOM05D005029 ORTHO05D006052 1.8e-93 346.7 296 67.9
Cpa.g.c27842.2 Carica papaya HOM05D005029 ORTHO05D006052 2.6e-92 342.8 304 66.8
COL.COLO4_08419 Corchorus olitorius HOM05D005029 ORTHO05D006052 9.9e-92 340.9 273 69.6
Gohir.A13G208700 Gossypium hirsutum HOM05D005029 ORTHO05D006052 9.9e-92 340.9 296 67.2
Prupe.1G076300 Prunus persica HOM05D005029 ORTHO05D006052 4.9e-91 338.6 306 64.7
MD16G1249500 Malus domestica HOM05D005029 ORTHO05D006052 6.4e-91 338.2 304 65.1
Duzib170G0048 Durio zibethinus HOM05D005029 ORTHO05D006052 8.3e-91 337.8 301 65.1
Glyma.09G059300 Glycine max HOM05D005029 ORTHO05D006052 2.4e-90 336.3 297 67.0
Medtr2g037940 Medicago truncatula HOM05D005029 ORTHO05D006052 5.4e-90 335.1 301 64.1
Thecc.09G185600 Theobroma cacao HOM05D005029 ORTHO05D006052 2.1e-89 333.2 301 64.8
Lalb_Chr11g0074801 Lupinus albus HOM05D005029 ORTHO05D006052 1.3e-88 330.5 291 69.4
VMungo1309G1415 Vigna mungo HOM05D005029 ORTHO05D006052 2.3e-88 329.7 301 65.8
Duzib150G1033 Durio zibethinus HOM05D005029 ORTHO05D006052 1.9e-87 326.6 301 63.5
TWI34G0612 Tripterygium wilfordii HOM05D005029 ORTHO05D006052 4.3e-87 325.5 297 67.0
Phvul.009G236500 Phaseolus vulgaris HOM05D005029 ORTHO05D006052 1.2e-86 323.9 299 63.5
TAR383G0036 Trochodendron aralioides HOM05D005029 ORTHO05D006052 1.2e-86 323.9 301 65.1
Nn7g36649 Nelumbo nucifera HOM05D005029 ORTHO05D006052 8.1e-86 321.2 301 62.5
TWI32G0396 Tripterygium wilfordii HOM05D005029 ORTHO05D006052 8.1e-86 321.2 306 65.4
TAR626G1810 Trochodendron aralioides HOM05D005029 ORTHO05D006052 1.1e-85 320.9 301 63.5
Glyma.15G165600 Glycine max HOM05D005029 ORTHO05D006052 5.2e-85 318.5 308 64.6
Potri.006G075900 Populus trichocarpa HOM05D005029 ORTHO05D006052 1.5e-84 317.0 304 63.5
Sabra18G0116800 Salix brachista HOM05D005029 ORTHO05D006052 2.6e-84 316.2 301 61.8
Lj6g0016757 Lotus japonicus HOM05D005029 ORTHO05D006052 7.6e-84 314.7 296 65.5
Manes.06G020200 Manihot esculenta HOM05D005029 ORTHO05D006052 3.8e-83 312.4 308 61.0
Ca_02102_v3 Cicer arietinum L. HOM05D005029 ORTHO05D006052 4.9e-83 312.0 303 62.4
Potri.018G143000 Populus trichocarpa HOM05D005029 ORTHO05D006052 3.2e-82 309.3 301 60.8
Atru.chr7.763 Acer truncatum HOM05D005029 ORTHO05D006052 3.5e-81 305.8 303 64.4
Atru.chr7.783 Acer truncatum HOM05D005029 ORTHO05D006052 3.5e-81 305.8 303 64.4
TPR.G7936 Trifolium pratense HOM05D005029 ORTHO05D006052 4.6e-81 305.4 301 62.8
QL02p046501 Quercus lobata HOM05D005029 ORTHO05D006052 7.8e-81 304.7 403 51.1
MBI13_g01742_MAGBIO Magnolia biondii HOM05D005029 ORTHO05D006052 2.3e-80 303.1 286 62.2
RcHm_v2.0_Chr4g0399711 Rosa chinensis HOM05D005029 ORTHO05D006052 5.1e-80 302.0 303 59.7
Psat1g145480 Pisum sativum HOM05D005029 ORTHO05D006052 1.1e-79 300.8 305 60.0
Eucgr.C00120 Eucalyptus grandis HOM05D005029 ORTHO05D006052 2.5e-79 299.7 309 60.2
Nitab4.5_0000617g0020 Nicotiana tabacum HOM05D005029 ORTHO05D006052 2.5e-79 299.7 305 62.0
THA.LOC104803957 Tarenaya hassleriana HOM05D005029 ORTHO05D006052 4.3e-79 298.9 301 61.8
THA.LOC104803983 Tarenaya hassleriana HOM05D005029 ORTHO05D006052 4.3e-79 298.9 301 61.8
MBI19_g21652_MAGBIO Magnolia biondii HOM05D005029 ORTHO05D006052 1.6e-78 297.0 281 61.9
Aqoxy7G02787 Aquilegia oxysepala HOM05D005029 ORTHO05D006052 3.6e-78 295.8 274 64.2
AUR62021347 Chenopodium quinoa HOM05D005029 ORTHO05D006052 3.6e-78 295.8 304 60.5
Peaxi162Scf01600g00016 Petunia axillaris HOM05D005029 ORTHO05D006052 3.6e-78 295.8 303 60.7
PGSC0003DMG400028729 Solanum tuberosum HOM05D005029 ORTHO05D006052 3.6e-78 295.8 308 61.4
FvH4_4g07340 Fragaria vesca HOM05D005029 ORTHO05D006052 4.7e-78 295.4 295 58.6
Nn2g14879 Nelumbo nucifera HOM05D005029 ORTHO05D006052 8.1e-78 294.7 290 62.8
FAN22G0020 Fragaria x ananassa HOM05D005029 ORTHO05D006052 1.4e-77 293.9 286 57.3
Carub.0007s1068 Capsella rubella HOM05D005029 ORTHO05D006052 2.4e-77 293.1 304 59.2
PSO170G2568 Papaver somniferum HOM05D005029 ORTHO05D006052 3.1e-77 292.7 306 61.1
EL10Ac8g18332 Beta vulgaris HOM05D005029 ORTHO05D006052 5.3e-77 292.0 301 58.5
Solyc07g008780.3 Solanum lycopersicum HOM05D005029 ORTHO05D006052 5.3e-77 292.0 308 60.4
GSVIVG01010867001 Vitis vinifera HOM05D005029 ORTHO05D006052 6.9e-77 291.6 291 59.8
FAN12G1304 Fragaria x ananassa HOM05D005029 ORTHO05D006052 9.0e-77 291.2 293 58.4
FAN17G0071 Fragaria x ananassa HOM05D005029 ORTHO05D006052 9.0e-77 291.2 308 55.8
MSTRG.26542 Avicennia marina HOM05D005029 ORTHO05D006052 3.4e-76 289.3 296 59.8
CARHR237880 Cardamine hirsuta HOM05D005029 ORTHO05D006052 5.8e-76 288.5 301 60.1
AUR62033261 Chenopodium quinoa HOM05D005029 ORTHO05D006052 7.6e-76 288.1 304 59.9
Actinidia01279 Actinidia chinensis HOM05D005029 ORTHO05D006052 9.9e-76 287.7 302 61.6
PSO063G5693 Papaver somniferum HOM05D005029 ORTHO05D006052 9.9e-76 287.7 307 59.0
AL7G22280 Arabidopsis lyrata HOM05D005029 ORTHO05D006052 2.2e-75 286.6 304 58.6
arahy.Tifrunner.gnm1.ann1.K38ATV Arachis hypogaea HOM05D005029 ORTHO05D006052 2.2e-75 286.6 312 59.6
Dinv25437 Davidia involucrata HOM05D005029 ORTHO05D006052 6.4e-75 285.0 285 62.1
Sabra06G0056600 Salix brachista HOM05D005029 ORTHO05D006052 6.4e-75 285.0 323 54.8
MELO3C017433.2 Cucumis melo HOM05D005029 ORTHO05D006052 8.4e-75 284.6 305 57.7
Thhalv10025919m.g Eutrema salsugineum HOM05D005029 ORTHO05D006052 1.4e-74 283.9 303 59.1
Sopen07g004720 Solanum pennellii HOM05D005029 ORTHO05D006052 1.4e-74 283.9 308 59.4
CsaV3_1G031840 Cucumis sativus L. HOM05D005029 ORTHO05D006052 1.9e-74 283.5 259 64.1
DCAR_030818 Daucus carota HOM05D005029 ORTHO05D006052 2.4e-74 283.1 274 61.7
Hund26310 Selenicereus undatus HOM05D005029 ORTHO05D006052 4.2e-74 282.3 275 62.5
Cc00_g10760 Coffea canephora HOM05D005029 ORTHO05D006052 1.2e-73 280.8 268 63.1
FAN07G2409 Fragaria x ananassa HOM05D005029 ORTHO05D006052 1.2e-73 280.8 267 57.3
Lsat_1_v5_gn_3_137280 Lactuca sativa HOM05D005029 ORTHO05D006052 1.2e-73 280.8 275 61.5
Nitab4.5_0008862g0020 Nicotiana tabacum HOM05D005029 ORTHO05D006052 2.7e-73 279.6 306 59.8
Sp7g27770 Schrenkiella parvula HOM05D005029 ORTHO05D006052 4.6e-73 278.9 304 56.6
AT4G29960 Arabidopsis thaliana HOM05D005029 ORTHO05D006052 1.3e-72 277.3 304 57.6
Sed0026503 Sechium edule HOM05D005029 ORTHO05D006052 2.3e-72 276.6 303 59.1
HanXRQChr13g0426591 Helianthus annuus HOM05D005029 ORTHO05D006052 1.5e-71 273.9 306 55.9
Ciclev10009010m.g Citrus clementina HOM05D005029 ORTHO05D006052 2.5e-71 273.1 280 61.4
Sc16g0010440 Simmondsia chinensis HOM05D005029 ORTHO05D006052 1.3e-70 270.8 279 61.6
Aa31LG2G20590 Aethionema arabicum HOM05D005029 ORTHO05D006052 1.1e-69 267.7 302 54.6
SGA_v2.0_scaffold31G12759 Striga asiatica HOM05D005029 ORTHO05D006052 1.1e-69 267.7 303 56.1
THA.LOC104814654 Tarenaya hassleriana HOM05D005029 ORTHO05D006052 3.1e-69 266.2 306 58.8
Oeu034799.1 Olea europaea HOM05D005029 ORTHO05D006052 5.3e-69 265.4 253 59.3
Ah.09g230060 Amaranthus hybridus HOM05D005029 ORTHO05D006052 2.9e-67 259.6 311 54.0
BolC3t21207H Brassica oleracea HOM05D005029 ORTHO05D006052 2.9e-67 259.6 303 56.8
Ah.14g083530 Amaranthus hybridus HOM05D005029 ORTHO05D006052 3.8e-67 259.2 304 55.9
Migut.L01885 Erythranthe guttata HOM05D005029 ORTHO05D006052 9.3e-66 254.6 304 55.9
ClCG06G013560 Citrullus lanatus HOM05D005029 ORTHO05D006052 2.1e-65 253.4 272 56.6
BcaC01g01206 Brassica carinata HOM05D005029 ORTHO05D006052 1.0e-64 251.1 290 56.9
Lalb_Chr13g0300031 Lupinus albus HOM05D005029 ORTHO05D006052 1.0e-64 251.1 297 55.6
SHI09006 Sapria himalayana HOM05D005029 ORTHO05D006052 2.3e-64 250.0 273 54.2
BraA08t33909Z Brassica rapa HOM05D005029 ORTHO05D006052 3.1e-61 239.6 301 55.1
CSS0012939 Camellia sinensis var. sinensis HOM05D005029 ORTHO05D006052 1.5e-60 237.3 306 55.9
BcaNung00506 Brassica carinata HOM05D005029 ORTHO05D006052 1.7e-59 233.8 302 54.0
A08p19470 Brassica napus HOM05D005029 ORTHO05D006052 2.2e-59 233.4 302 54.0
PGR142G1735 Punica granatum HOM05D005029 ORTHO05D006052 2.9e-59 233.0 267 60.7
ATR0626G110 Amborella trichopoda HOM05D005029 ORTHO05D006052 4.9e-59 232.3 311 48.2
ECA240G3783 Erigeron canadensis HOM05D005029 ORTHO05D006052 2.1e-57 226.9 237 57.0
BcaC09g51777 Brassica carinata HOM05D000106 ORTHO05D000160 1.3e-56 224.2 252 58.3
BraA01t00761Z Brassica rapa HOM05D005029 ORTHO05D006052 3.9e-56 222.6 304 52.3
BolC1t00902H Brassica oleracea HOM05D005029 ORTHO05D006052 1.1e-55 221.1 303 52.1
arahy.Tifrunner.gnm1.ann1.J7B49U Arachis hypogaea HOM05D005029 ORTHO05D006052 1.5e-55 220.7 195 67.2
C03p88970 Brassica napus HOM05D005029 ORTHO05D006052 5.6e-55 218.8 264 56.1
CDE04G3679 Ceratophyllum demersum HOM05D005029 ORTHO05D006052 1.6e-54 217.2 286 49.3
C01p09110 Brassica napus HOM05D005029 ORTHO05D006052 2.8e-54 216.5 251 55.8
BcaC09g51764 Brassica carinata HOM05D005029 ORTHO05D006052 3.7e-54 216.1 285 50.5
BcaC07g37961 Brassica carinata HOM05D005029 ORTHO05D006052 4.8e-54 215.7 301 49.2
A01p08140 Brassica napus HOM05D005029 ORTHO05D006052 9.0e-53 211.5 304 50.7
Oeu044675.2 Olea europaea HOM05D005029 ORTHO05D006052 9.0e-53 211.5 306 46.4
unitig_27.g24759 Utricularia gibba HOM05D005029 ORTHO05D006052 1.4e-50 204.1 252 48.4
unitig_699.g19404 Utricularia gibba HOM05D005029 ORTHO05D006052 9.3e-50 201.4 294 44.2
CDE02G0552 Ceratophyllum demersum HOM05D005029 ORTHO05D006052 3.9e-48 196.1 298 49.0
HPP92_004703 Vanilla planifolia HOM05D005029 ORTHO05D006052 5.3e-45 185.7 243 51.0
Migut.J00802 Erythranthe guttata HOM05D005029 ORTHO05D006052 1.3e-43 181.0 302 44.0
Lj5A672T26 Lonicera japonica HOM05D005029 ORTHO05D006052 6.5e-43 178.7 170 60.0
Zm00001eb071460 Zea mays HOM05D005029 ORTHO05D006052 3.2e-42 176.4 271 46.5
Os04g0606800 Oryza sativa ssp. japonica HOM05D005029 ORTHO05D006052 7.2e-42 175.3 251 47.0
Duzib168G1982 Durio zibethinus HOM05D005029 ORTHO05D006052 1.2e-41 174.5 158 67.1
C07p57380 Brassica napus HOM05D005029 ORTHO05D006052 1.8e-40 170.6 197 54.8
Zm00001eb430500 Zea mays HOM05D005029 ORTHO05D006052 2.0e-39 167.2 271 45.0
SEGI_23735 Sequoiadendron giganteum HOM05D005029 ORTHO05D006052 8.2e-38 161.8 279 40.1
Mapoly0076s0086 Marchantia polymorpha HOM05D005029 ORTHO05D006052 1.1e-37 161.4 285 38.2
Rhsim01G0118000 Rhododendron simsii HOM05D005029 ORTHO05D006052 1.9e-34 150.6 234 42.3
AagrBONN_evm.TU.Sc2ySwM_368.2110 Anthoceros agrestis HOM05D005029 ORTHO05D006052 2.5e-34 150.2 323 36.8
SMO358G0278 Selaginella moellendorffii HOM05D005029 ORTHO05D006052 2.6e-28 130.2 278 36.7
Pp3c9_8340 Physcomitrium patens HOM05D005029 ORTHO05D006052 1.0e-27 128.3 282 35.5
BcaB06g28011 Brassica carinata HOM05D005029 ORTHO05D006052 3.8e-27 126.3 91 74.7
BcaC05g25672 Brassica carinata HOM05D005029 ORTHO05D006052 3.2e-26 123.2 218 43.6
A03p59350 Brassica napus HOM05D005029 ORTHO05D006052 3.9e-24 116.3 258 36.8
BolC6t39910H Brassica oleracea HOM05D005029 ORTHO05D006052 6.5e-19 99.0 196 39.3
vmacro20818 Vaccinium macrocarpon HOM05D005029 ORTHO05D006052 7.2e-18 95.5 86 57.0
BcaB04g18770 Brassica carinata HOM05D005029 ORTHO05D006052 1.6e-12 77.8 87 56.3
Aa31LG8G16260 Aethionema arabicum HOM05D005029 ORTHO05D006052 2.7e-12 77.0 83 50.6
CBR_g52634 Chara braunii HOM05D005029 ORTHO05D006052 1.7e-11 74.3 99 45.5
Lj5C672T2 Lonicera japonica HOM05D005029 ORTHO05D006052 1.7e-11 74.3 59 57.6
BcaB06g26390 Brassica carinata HOM05D005029 ORTHO05D006052 1.1e-10 71.6 117 41.0
Aqoxy377s001 Aquilegia oxysepala HOM05D005029 ORTHO05D006052 1.2e-09 68.2 76 52.6
Pp3c9_14880 Physcomitrium patens HOM05D005029 ORTHO05D006052 1.6e-09 67.8 120 34.2
BolC5t30251H Brassica oleracea HOM05D005029 ORTHO05D006052 3.6e-09 66.6 101 42.6
MBI13_g34035_MAGBIO Magnolia biondii HOM05D005029 ORTHO05D006052 2.0e-07 60.8 84 42.9


User provided reference genes

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