Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT11G1059 Cannabis sativa HOM05D003841 ORTHO05D004602 2.9e-143 511.9 269 100.0
QL08p014515 Quercus lobata HOM05D003841 ORTHO05D004602 2.0e-59 233.4 330 47.3
CiPaw.12G124700 Carya illinoinensis HOM05D003841 ORTHO05D004602 4.7e-56 222.2 317 46.1
Dinv22328 Davidia involucrata HOM05D003841 ORTHO05D004602 6.7e-55 218.4 333 42.6
CSS0048456 Camellia sinensis var. sinensis HOM05D003841 ORTHO05D004602 2.6e-54 216.5 332 42.2
Lj1A861T58 Lonicera japonica HOM05D003841 ORTHO05D004602 1.7e-53 213.8 321 41.4
arahy.Tifrunner.gnm1.ann1.GYU1HX Arachis hypogaea HOM05D003841 ORTHO05D004602 1.1e-52 211.1 333 42.9
Dinv02831 Davidia involucrata HOM05D003841 ORTHO05D004602 5.3e-52 208.8 336 41.1
arahy.Tifrunner.gnm1.ann1.SIF99T Arachis hypogaea HOM05D003841 ORTHO05D004602 2.0e-51 206.8 331 40.8
Lalb_Chr22g0357311 Lupinus albus HOM05D003841 ORTHO05D004602 1.0e-50 204.5 321 42.7
TWI39G0875 Tripterygium wilfordii HOM05D003841 ORTHO05D004602 2.2e-50 203.4 336 40.2
Actinidia35303 Actinidia chinensis HOM05D003841 ORTHO05D004602 2.9e-50 203.0 351 39.3
Manes.15G079400 Manihot esculenta HOM05D003841 ORTHO05D004602 3.8e-50 202.6 322 40.1
Cfa020471 Carpinus fangiana HOM05D003841 ORTHO05D004602 7.2e-49 198.4 318 44.7
Nitab4.5_0000552g0100 Nicotiana tabacum HOM05D003841 ORTHO05D004602 1.6e-48 197.2 334 41.3
FAN11G1553 Fragaria x ananassa HOM05D003841 ORTHO05D004602 4.7e-48 195.7 314 41.7
FvH4_3g21510 Fragaria vesca HOM05D003841 ORTHO05D004602 1.0e-47 194.5 317 41.6
Potri.001G410100 Populus trichocarpa HOM05D003841 ORTHO05D004602 2.3e-47 193.4 330 40.3
Haze_09572 Corylus avellana HOM05D003841 ORTHO05D004602 4.0e-47 192.6 343 42.9
Nitab4.5_0003052g0050 Nicotiana tabacum HOM05D003841 ORTHO05D004602 4.0e-47 192.6 324 41.7
TPR.G34029 Trifolium pratense HOM05D003841 ORTHO05D004602 5.2e-47 192.2 321 42.1
Sabra16G0281100 Salix brachista HOM05D003841 ORTHO05D004602 6.7e-47 191.8 336 39.9
ClCG05G014990 Citrullus lanatus HOM05D003841 ORTHO05D004602 2.0e-46 190.3 316 40.5
Psat7g160280 Pisum sativum HOM05D003841 ORTHO05D004602 2.6e-46 189.9 313 40.9
RhsimUnG0254800 Rhododendron simsii HOM05D003841 ORTHO05D004602 4.4e-46 189.1 336 39.3
TAR271G0005 Trochodendron aralioides HOM05D003841 ORTHO05D004602 7.5e-46 188.3 351 38.5
FAN21G0547 Fragaria x ananassa HOM05D003841 ORTHO05D004602 9.7e-46 188.0 321 42.1
MD11G1230100 Malus domestica HOM05D003841 ORTHO05D004602 9.7e-46 188.0 318 39.6
Lj8A163G39 Lonicera japonica HOM05D003841 ORTHO05D004602 3.7e-45 186.0 326 40.5
Oeu005438.1 Olea europaea HOM05D003841 ORTHO05D004602 3.7e-45 186.0 333 39.3
TAR271G0006 Trochodendron aralioides HOM05D003841 ORTHO05D004602 4.8e-45 185.7 351 38.2
Phvul.011G146700 Phaseolus vulgaris HOM05D003841 ORTHO05D004602 8.2e-45 184.9 324 42.3
Prupe.4G197300 Prunus persica HOM05D003841 ORTHO05D004602 8.2e-45 184.9 318 39.9
FAN25G3758 Fragaria x ananassa HOM05D003841 ORTHO05D004602 1.1e-44 184.5 313 39.3
Ciclev10008955m.g Citrus clementina HOM05D003841 ORTHO05D004602 2.4e-44 183.3 324 37.7
Glyma.06G262900 Glycine max HOM05D003841 ORTHO05D004602 2.4e-44 183.3 332 42.2
TAR627G0073 Trochodendron aralioides HOM05D003841 ORTHO05D004602 2.4e-44 183.3 348 37.9
EL10Ac4g08014 Beta vulgaris HOM05D003841 ORTHO05D004602 5.3e-44 182.2 301 40.9
Cc05_g12980 Coffea canephora HOM05D003841 ORTHO05D004602 7.0e-44 181.8 327 38.2
CSS0046033 Camellia sinensis var. sinensis HOM05D003841 ORTHO05D004602 9.1e-44 181.4 286 43.0
Ca_18832_v3 Cicer arietinum L. HOM05D003841 ORTHO05D004602 9.1e-44 181.4 320 39.1
Ca_30091_v3 Cicer arietinum L. HOM05D003841 ORTHO05D004602 9.1e-44 181.4 320 39.1
Medtr4g081550 Medicago truncatula HOM05D003841 ORTHO05D004602 9.1e-44 181.4 313 39.6
Sed0013156 Sechium edule HOM05D003841 ORTHO05D004602 1.2e-43 181.0 313 38.7
Peaxi162Scf01365g00027 Petunia axillaris HOM05D003841 ORTHO05D004602 2.0e-43 180.3 330 39.7
CsaV3_3G022650 Cucumis sativus L. HOM05D003841 ORTHO05D004602 4.5e-43 179.1 317 40.4
Potri.011G130000 Populus trichocarpa HOM05D003841 ORTHO05D004602 7.7e-43 178.3 331 39.0
MELO3C018156.2 Cucumis melo HOM05D003841 ORTHO05D004602 1.0e-42 177.9 317 40.1
Lj3g0010893 Lotus japonicus HOM05D003841 ORTHO05D004602 1.3e-42 177.6 325 38.8
TWI38G0390 Tripterygium wilfordii HOM05D003841 ORTHO05D004602 2.2e-42 176.8 337 37.4
AUR62029272 Chenopodium quinoa HOM05D003841 ORTHO05D004602 2.9e-42 176.4 305 40.3
VMungo1127G0850 Vigna mungo HOM05D003841 ORTHO05D004602 6.5e-42 175.3 326 39.6
Nn1g06911 Nelumbo nucifera HOM05D003841 ORTHO05D004602 1.1e-41 174.5 324 37.0
Rhsim06G0190700 Rhododendron simsii HOM05D003841 ORTHO05D004602 1.1e-41 174.5 316 38.0
Rhsim06G0189000 Rhododendron simsii HOM05D003841 ORTHO05D004602 1.5e-41 174.1 316 38.0
Sopen07g032000 Solanum pennellii HOM05D003841 ORTHO05D004602 1.9e-41 173.7 335 38.5
FAN16G3040 Fragaria x ananassa HOM05D003841 ORTHO05D004602 3.2e-41 172.9 320 38.8
PGSC0003DMG400019273 Solanum tuberosum HOM05D003841 ORTHO05D000515 4.2e-41 172.6 307 38.4
Solyc07g063870.3 Solanum lycopersicum HOM05D003841 ORTHO05D004602 5.5e-41 172.2 333 39.3
Oeu052335.1 Olea europaea HOM05D003841 ORTHO05D004602 9.4e-41 171.4 328 36.0
Glyma.12G139800 Glycine max HOM05D003841 ORTHO05D004602 1.6e-40 170.6 343 38.2
Duzib213G0276 Durio zibethinus HOM05D003841 ORTHO05D004602 2.7e-40 169.9 320 40.0
Lalb_Chr01g0006261 Lupinus albus HOM05D003841 ORTHO05D004602 4.7e-40 169.1 324 38.0
Hund23360 Selenicereus undatus HOM05D003841 ORTHO05D004602 8.0e-40 168.3 298 39.9
vmacro11787 Vaccinium macrocarpon HOM05D003841 ORTHO05D004602 8.0e-40 168.3 348 35.1
AUR62041149 Chenopodium quinoa HOM05D003841 ORTHO05D004602 2.3e-39 166.8 303 39.6
MD03G1215500 Malus domestica HOM05D003841 ORTHO05D004602 2.3e-39 166.8 318 37.7
Ah.06g183230 Amaranthus hybridus HOM05D003841 ORTHO05D004602 4.0e-39 166.0 302 39.1
Migut.M01831 Erythranthe guttata HOM05D003841 ORTHO05D004602 4.0e-39 166.0 286 40.9
Eucgr.F03390 Eucalyptus grandis HOM05D003841 ORTHO05D004602 8.8e-39 164.9 330 38.8
Lsat_1_v5_gn_7_107821 Lactuca sativa HOM05D003841 ORTHO05D004602 1.2e-38 164.5 305 38.7
Gohir.A11G281600 Gossypium hirsutum HOM05D003841 ORTHO05D004602 1.3e-37 161.0 323 38.7
COL.COLO4_09535 Corchorus olitorius HOM05D003841 ORTHO05D004602 1.7e-37 160.6 324 38.3
Glyma.13G284700 Glycine max HOM05D003841 ORTHO05D004602 6.3e-37 158.7 317 38.2
Gohir.D11G294200 Gossypium hirsutum HOM05D003841 ORTHO05D004602 1.4e-36 157.5 321 38.0
Gorai.007G317200 Gossypium raimondii HOM05D003841 ORTHO05D004602 3.1e-36 156.4 321 38.0
Gohir.D13G147500 Gossypium hirsutum HOM05D003841 ORTHO05D004602 5.4e-36 155.6 321 37.4
Lj3g0010292 Lotus japonicus HOM05D003841 ORTHO05D004602 7.0e-36 155.2 326 38.7
Gorai.013G165300 Gossypium raimondii HOM05D003841 ORTHO05D004602 9.1e-36 154.8 321 37.1
Thecc.07G059100 Theobroma cacao HOM05D003841 ORTHO05D004602 9.1e-36 154.8 321 38.0
Migut.H01878 Erythranthe guttata HOM05D003841 ORTHO05D004602 1.2e-35 154.5 327 37.6
Duzib170G0031 Durio zibethinus HOM05D003841 ORTHO05D004602 1.6e-35 154.1 324 37.3
Aa31LG3G10490 Aethionema arabicum HOM05D003841 ORTHO05D004602 2.0e-35 153.7 316 36.4
HanXRQChr11g0332121 Helianthus annuus HOM05D003841 ORTHO05D004602 2.7e-35 153.3 317 36.6
GSVIVG01014549001 Vitis vinifera HOM05D003841 ORTHO05D004602 4.5e-35 152.5 231 43.3
SGA_v2.0_scaffold9G05000 Striga asiatica HOM05D003841 ORTHO05D004602 5.9e-35 152.1 327 37.3
vmacro09595 Vaccinium macrocarpon HOM05D003841 ORTHO05D004602 1.7e-34 150.6 473 29.8
Glyma.12G216500 Glycine max HOM05D003841 ORTHO05D004602 2.9e-34 149.8 321 40.2
Gohir.A13G142900 Gossypium hirsutum HOM05D003841 ORTHO05D004602 2.9e-34 149.8 321 36.4
MSTRG.6876 Avicennia marina HOM05D003841 ORTHO05D004602 1.5e-33 147.5 320 36.9
PSO675G5063 Papaver somniferum HOM05D003841 ORTHO05D004602 3.2e-33 146.4 319 33.2
PSO541G4862 Papaver somniferum HOM05D003841 ORTHO05D004602 5.5e-33 145.6 325 33.8
SalBow7G4379 Salvia bowleyana HOM05D003841 ORTHO05D004602 1.2e-32 144.4 313 36.7
Sc03g0009430 Simmondsia chinensis HOM05D003841 ORTHO05D004602 2.1e-32 143.7 300 37.3
Hund02157 Selenicereus undatus HOM05D003841 ORTHO05D004602 8.0e-32 141.7 287 38.0
Actinidia10692 Actinidia chinensis HOM05D003841 ORTHO05D004602 1.0e-31 141.4 290 34.8
DCAR_010006 Daucus carota HOM05D003841 ORTHO05D004602 1.4e-31 141.0 311 34.4
DCAR_022502 Daucus carota HOM05D003841 ORTHO05D004602 6.8e-31 138.7 314 33.4
RcHm_v2.0_Chr5g0036951 Rosa chinensis HOM05D003841 ORTHO05D004602 1.5e-30 137.5 220 42.7
THA.LOC104799894 Tarenaya hassleriana HOM05D003841 ORTHO05D004602 3.4e-30 136.3 322 33.9
ECA236G3199 Erigeron canadensis HOM05D003841 ORTHO05D004602 9.8e-30 134.8 324 35.2
A10p11770 Brassica napus HOM05D003841 ORTHO05D004602 1.7e-29 134.0 302 35.4
BraA10t43276Z Brassica rapa HOM05D003841 ORTHO05D004602 3.7e-29 132.9 306 35.3
Sp6g16510 Schrenkiella parvula HOM05D003841 ORTHO05D004602 6.3e-29 132.1 313 35.8
AL8G29910 Arabidopsis lyrata HOM05D003841 ORTHO05D004602 8.3e-29 131.7 315 35.6
PSO675G0068 Papaver somniferum HOM05D003841 ORTHO05D004602 1.4e-28 131.0 309 34.0
Carub.0008s1482 Capsella rubella HOM05D003841 ORTHO05D004602 2.4e-28 130.2 315 34.0
DCAR_008683 Daucus carota HOM05D003841 ORTHO05D004602 4.1e-28 129.4 299 35.1
TAR623G1765 Trochodendron aralioides HOM05D003841 ORTHO05D004602 9.2e-28 128.3 321 33.3
C09p44880 Brassica napus HOM05D003841 ORTHO05D004602 1.2e-27 127.9 302 34.4
Sabra11G0117400 Salix brachista HOM05D003841 ORTHO05D004602 1.2e-27 127.9 273 38.1
CARHR267820 Cardamine hirsuta HOM05D003841 ORTHO05D004602 2.0e-27 127.1 318 34.6
AT5G54540 Arabidopsis thaliana HOM05D003841 ORTHO05D004602 2.7e-27 126.7 315 34.9
BcaC04g20329 Brassica carinata HOM05D003841 ORTHO05D004602 2.7e-27 126.7 302 34.4
A02p10210 Brassica napus HOM05D003841 ORTHO05D004602 2.7e-27 126.7 304 33.9
arahy.Tifrunner.gnm1.ann1.SKE74K Arachis hypogaea HOM05D003841 ORTHO05D004602 7.8e-27 125.2 323 33.7
Aqoxy1G03844 Aquilegia oxysepala HOM05D003841 ORTHO05D004602 1.3e-26 124.4 333 34.8
HPP92_004148 Vanilla planifolia HOM05D003841 ORTHO05D004602 1.3e-26 124.4 313 31.6
MBI18_g38396_MAGBIO Magnolia biondii HOM05D003841 ORTHO05D004602 1.7e-26 124.0 332 32.8
SGA_v2.0_scaffold70G23570 Striga asiatica HOM05D003841 ORTHO05D004602 2.3e-26 123.6 303 33.7
C02p16910 Brassica napus HOM05D003841 ORTHO05D004602 3.8e-26 122.9 304 34.5
BcaB08g35813 Brassica carinata HOM05D003841 ORTHO05D004602 5.0e-26 122.5 304 33.9
CAN.G1160.11 Capsicum annuum HOM05D003841 ORTHO05D004602 5.0e-26 122.5 194 37.1
Actinidia05162 Actinidia chinensis HOM05D003841 ORTHO05D004602 6.6e-26 122.1 352 31.8
Thhalv10014255m.g Eutrema salsugineum HOM05D003841 ORTHO05D004602 1.1e-25 121.3 309 34.0
Zm00001eb171810 Zea mays HOM05D003841 ORTHO05D004602 3.3e-25 119.8 323 31.0
BolC9t57359H Brassica oleracea HOM05D003841 ORTHO05D004602 4.3e-25 119.4 317 33.1
arahy.Tifrunner.gnm1.ann1.SRRR95 Arachis hypogaea HOM05D003841 ORTHO05D004602 5.6e-25 119.0 332 34.0
BraA02t06092Z Brassica rapa HOM05D003841 ORTHO05D004602 8.0e-24 115.2 305 33.4
ATR0804G047 Amborella trichopoda HOM05D003841 ORTHO05D004602 1.4e-23 114.4 329 28.9
MSTRG.14400 Avicennia marina HOM05D003841 ORTHO05D004602 2.3e-23 113.6 277 30.7
PSO541G5517 Papaver somniferum HOM05D003841 ORTHO05D004602 1.2e-22 111.3 209 36.8
unitig_899.g15555 Utricularia gibba HOM05D003841 ORTHO05D004602 1.2e-22 111.3 310 31.3
Os08g0179900 Oryza sativa ssp. japonica HOM05D003841 ORTHO05D004602 2.6e-22 110.2 240 32.9
Zm00001eb413050 Zea mays HOM05D003841 ORTHO05D004602 5.7e-22 109.0 323 29.4
Cfa021072 Carpinus fangiana HOM05D003841 ORTHO05D004602 7.5e-22 108.6 123 55.3
MELO3C016604.2 Cucumis melo HOM05D003841 ORTHO05D004602 1.3e-21 107.8 340 28.8
CDE05G3666 Ceratophyllum demersum HOM05D003841 ORTHO05D004602 9.2e-20 101.7 318 28.9
CAN.G64.40 Capsicum annuum HOM05D003841 ORTHO05D004602 2.7e-19 100.1 130 42.3
ClCG10G006140 Citrullus lanatus HOM05D003841 ORTHO05D004602 7.8e-19 98.6 263 30.8
unitig_746.g26819 Utricularia gibba HOM05D003841 ORTHO05D004602 1.0e-18 98.2 278 29.5
HPP92_005894 Vanilla planifolia HOM05D003841 ORTHO05D004602 2.3e-18 97.1 311 29.9
Gorai.007G317300 Gossypium raimondii HOM05D003841 ORTHO05D004602 3.0e-18 96.7 263 31.2
Sed0016497 Sechium edule HOM05D003841 ORTHO05D004602 3.9e-18 96.3 207 35.7
CsaV3_3G005690 Cucumis sativus L. HOM05D003841 ORTHO05D004602 5.0e-18 95.9 336 28.9
Lsat_1_v5_gn_2_59361 Lactuca sativa HOM05D003841 ORTHO05D004602 5.0e-18 95.9 157 37.6
Sabra16G0276700 Salix brachista HOM05D006433 ORTHO05D005382 6.6e-18 95.5 121 47.9
Sed0013484 Sechium edule HOM05D003841 ORTHO05D004602 2.5e-17 93.6 259 26.3
Gohir.D11G294233 Gossypium hirsutum HOM05D003841 ORTHO05D004602 3.3e-17 93.2 274 30.7
PSO384G0968 Papaver somniferum HOM05D003841 ORTHO05D004602 7.3e-17 92.0 305 30.8
Ah.04g165190 Amaranthus hybridus HOM05D003841 ORTHO05D004602 2.1e-16 90.5 185 38.9
Oeu052339.1 Olea europaea HOM05D003841 ORTHO05D004602 2.1e-16 90.5 141 37.6
PSO339G6399 Papaver somniferum HOM05D003841 ORTHO05D004602 4.7e-16 89.4 311 30.5
Gohir.A11G281650 Gossypium hirsutum HOM05D003841 ORTHO05D004602 8.0e-16 88.6 265 32.1
Cpa.g.sc80.126 Carica papaya HOM05D003841 ORTHO05D004602 1.4e-15 87.8 190 36.8
Cpa.g.c47761 Carica papaya HOM05D003841 ORTHO05D004602 1.8e-15 87.4 140 43.6
VMungo1027G0001 Vigna mungo HOM05D003841 ORTHO05D004602 3.1e-15 86.7 170 35.9
Oeu052334.1 Olea europaea HOM05D003841 ORTHO05D004602 4.0e-15 86.3 215 29.8
BcaB05g22143 Brassica carinata HOM05D003841 ORTHO05D004602 5.2e-15 85.9 293 29.0
CDE05G3612 Ceratophyllum demersum HOM05D003841 ORTHO05D004602 3.4e-14 83.2 307 25.7
VMungo1080G1564 Vigna mungo HOM05D003841 ORTHO05D004602 5.4e-12 75.9 231 31.6
Phvul.005G089400 Phaseolus vulgaris HOM05D003841 ORTHO05D004602 1.7e-10 70.9 55 54.5
Os03g0201000 Oryza sativa ssp. japonica HOM05D003841 ORTHO05D049799 3.9e-10 69.7 149 32.2
CAN.G952.3 Capsicum annuum HOM05D003841 ORTHO05D004602 2.5e-09 67.0 185 30.8
PGR031G0981 Punica granatum HOM05D003841 ORTHO05D004602 2.5e-09 67.0 150 32.7
CAN.G1207.10 Capsicum annuum HOM05D003841 ORTHO05D004602 1.6e-08 64.3 209 27.8
CAN.G183.13 Capsicum annuum HOM05D003841 ORTHO05D004602 1.6e-08 64.3 156 34.6
CAN.G22.51 Capsicum annuum HOM05D000121 ORTHO05D000102 1.4e-07 61.2 60 48.3
SMO367G1113 Selaginella moellendorffii HOM05D002766 ORTHO05D002809 3.1e-07 60.1 330 26.1
Oeu052338.1 Olea europaea HOM05D003841 ORTHO05D004602 4.0e-07 59.7 282 25.9
CAN.G935.4 Capsicum annuum HOM05D003841 ORTHO05D004602 8.9e-07 58.5 95 38.9
Manes.06G133000 Manihot esculenta HOM05D002766 ORTHO05D002809 8.9e-07 58.5 173 26.0
SEGI_16254 Sequoiadendron giganteum HOM05D002766 ORTHO05D002809 8.9e-07 58.5 332 24.1
HPP92_022467 Vanilla planifolia HOM05D002766 ORTHO05D002809 1.5e-06 57.8 322 25.2
Prupe.5G070000 Prunus persica HOM05D003841 ORTHO05D004602 3.4e-06 56.6 119 38.7
Actinidia13587 Actinidia chinensis HOM05D002766 ORTHO05D002809 4.4e-06 56.2 200 29.5


User provided reference genes

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