Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT11G1051 Cannabis sativa HOM05D004681 ORTHO05D005541 3.0e-174 615.1 325 100.0
RcHm_v2.0_Chr4g0400191 Rosa chinensis HOM05D004681 ORTHO05D005541 8.8e-126 454.1 317 73.5
Cfa013431 Carpinus fangiana HOM05D004681 ORTHO05D005541 1.2e-122 443.7 326 70.2
Prupe.1G079200 Prunus persica HOM05D004681 ORTHO05D005541 6.5e-121 438.0 318 68.9
TWI63G0533 Tripterygium wilfordii HOM05D004681 ORTHO05D005541 3.2e-120 435.6 326 69.6
CiPaw.07G195100 Carya illinoinensis HOM05D004681 ORTHO05D005541 1.8e-118 429.9 326 66.6
Atru.chr7.819 Acer truncatum HOM05D004681 ORTHO05D005541 4.0e-118 428.7 325 66.8
QL12p032381 Quercus lobata HOM05D004681 ORTHO05D005541 5.2e-118 428.3 321 69.5
FvH4_4g07590 Fragaria vesca HOM05D004681 ORTHO05D005541 1.3e-116 423.7 320 66.2
GSVIVG01010902001 Vitis vinifera HOM05D004681 ORTHO05D005541 3.1e-115 419.1 321 65.7
Gohir.D08G028500 Gossypium hirsutum HOM05D004681 ORTHO05D005541 9.1e-115 417.5 325 64.3
FAN22G1928 Fragaria x ananassa HOM05D004681 ORTHO05D005541 1.2e-114 417.2 320 64.7
FAN12G2798 Fragaria x ananassa HOM05D004681 ORTHO05D005541 2.0e-114 416.4 320 65.3
Gohir.A08G017900 Gossypium hirsutum HOM05D004681 ORTHO05D005541 5.9e-114 414.8 325 64.0
Thecc.09G181200 Theobroma cacao HOM05D004681 ORTHO05D005541 8.5e-113 411.0 318 65.1
Eucgr.C00132 Eucalyptus grandis HOM05D004681 ORTHO05D005541 1.5e-112 410.2 326 64.4
FAN17G0253 Fragaria x ananassa HOM05D004681 ORTHO05D005541 1.5e-112 410.2 320 67.8
Duzib170G0205 Durio zibethinus HOM05D004681 ORTHO05D005541 1.9e-112 409.8 317 65.0
Gorai.004G025600 Gossypium raimondii HOM05D004681 ORTHO05D005541 3.2e-112 409.1 336 62.2
Actinidia06358 Actinidia chinensis HOM05D004681 ORTHO05D005541 4.2e-112 408.7 321 63.6
MELO3C017439.2 Cucumis melo HOM05D004681 ORTHO05D005541 9.4e-112 407.5 321 65.7
Duzib168G0714 Durio zibethinus HOM05D004681 ORTHO05D005541 1.2e-111 407.1 320 65.9
RcHm_v2.0_Chr7g0191541 Rosa chinensis HOM05D004681 ORTHO05D005541 1.2e-111 407.1 316 62.7
Dinv25404 Davidia involucrata HOM05D004681 ORTHO05D005541 2.7e-111 406.0 311 65.6
ClCG06G013520 Citrullus lanatus HOM05D004681 ORTHO05D005541 3.6e-111 405.6 325 64.6
CiPaw.08G033800 Carya illinoinensis HOM05D004681 ORTHO05D005541 6.1e-111 404.8 316 65.8
MD13G1245600 Malus domestica HOM05D004681 ORTHO05D005541 8.0e-111 404.4 318 64.2
Cc06_g22600 Coffea canephora HOM05D004681 ORTHO05D005541 1.8e-110 403.3 322 65.8
Actinidia22469 Actinidia chinensis HOM05D004681 ORTHO05D005541 8.8e-110 401.0 320 62.5
Solyc07g009320.3 Solanum lycopersicum HOM05D004681 ORTHO05D005541 2.0e-109 399.8 319 62.7
Sopen07g005070 Solanum pennellii HOM05D004681 ORTHO05D005541 3.4e-109 399.1 319 62.7
Ciclev10008916m.g Citrus clementina HOM05D004681 ORTHO05D005541 9.8e-109 397.5 318 64.5
CsaV3_1G031790 Cucumis sativus L. HOM05D004681 ORTHO05D005541 2.8e-108 396.0 321 67.0
Cpa.g.sc95.29 Carica papaya HOM05D004681 ORTHO05D005541 3.7e-108 395.6 328 62.8
PGSC0003DMG400008514 Solanum tuberosum HOM05D004681 ORTHO05D005541 6.3e-108 394.8 319 62.1
SalBow7G3904 Salvia bowleyana HOM05D004681 ORTHO05D005541 3.1e-107 392.5 325 60.3
Dinv26443 Davidia involucrata HOM05D004681 ORTHO05D005541 1.2e-106 390.6 289 67.1
MSTRG.10452 Avicennia marina HOM05D004681 ORTHO05D005541 2.0e-106 389.8 327 60.2
Manes.04G060300 Manihot esculenta HOM05D004681 ORTHO05D005541 2.3e-105 386.3 319 63.9
Manes.14G161401 Manihot esculenta HOM05D004681 ORTHO05D005541 2.3e-105 386.3 319 64.3
CAN.G1668.9 Capsicum annuum HOM05D004681 ORTHO05D005541 2.9e-105 386.0 318 60.1
PGR044G2653 Punica granatum HOM05D004681 ORTHO05D005541 2.9e-105 386.0 318 62.9
SalBow7G0268 Salvia bowleyana HOM05D004681 ORTHO05D005541 4.3e-104 382.1 343 57.4
Rhsim13G0200500 Rhododendron simsii HOM05D004681 ORTHO05D005541 3.6e-103 379.0 364 56.0
Peaxi162Scf00324g00718 Petunia axillaris HOM05D004681 ORTHO05D005541 2.3e-102 376.3 322 59.0
CSS0025965 Camellia sinensis var. sinensis HOM05D004681 ORTHO05D005541 1.2e-101 374.0 312 65.4
HanXRQChr09g0266261 Helianthus annuus HOM05D004681 ORTHO05D005541 1.2e-101 374.0 324 58.3
Nitab4.5_0010281g0010 Nicotiana tabacum HOM05D004681 ORTHO05D005541 1.5e-101 373.6 314 60.8
SGA_v2.0_scaffold41G15864 Striga asiatica HOM05D004681 ORTHO05D005541 4.4e-101 372.1 328 59.5
MBI13_g31546_MAGBIO Magnolia biondii HOM05D004681 ORTHO05D005541 1.3e-100 370.5 320 63.1
PSO079G0045 Papaver somniferum HOM05D004681 ORTHO05D005541 1.3e-100 370.5 323 61.0
Potri.006G077100 Populus trichocarpa HOM05D004681 ORTHO05D005541 2.2e-100 369.8 314 64.3
PSO423G0181 Papaver somniferum HOM05D004681 ORTHO05D005541 2.9e-100 369.4 323 60.4
Oeu000976.1 Olea europaea HOM05D004681 ORTHO05D005541 6.4e-100 368.2 322 59.6
arahy.Tifrunner.gnm1.ann1.L4KBSE Arachis hypogaea HOM05D004681 ORTHO05D005541 1.4e-99 367.1 324 62.3
Aqoxy7G02735 Aquilegia oxysepala HOM05D004681 ORTHO05D005541 4.1e-99 365.5 322 59.6
ECA232G3088 Erigeron canadensis HOM05D004681 ORTHO05D005541 1.2e-98 364.0 328 60.7
arahy.Tifrunner.gnm1.ann1.K04ERL Arachis hypogaea HOM05D004681 ORTHO05D005541 3.5e-98 362.5 324 62.0
Migut.L01897 Erythranthe guttata HOM05D004681 ORTHO05D005541 3.5e-98 362.5 328 60.1
Sc14g0001370 Simmondsia chinensis HOM05D004681 ORTHO05D005541 2.3e-97 359.8 319 55.5
Phvul.003G142900 Phaseolus vulgaris HOM05D004681 ORTHO05D005541 5.0e-97 358.6 318 59.7
Lsat_1_v5_gn_4_183080 Lactuca sativa HOM05D004681 ORTHO05D005541 8.6e-97 357.8 326 58.3
AUR62033246 Chenopodium quinoa HOM05D004681 ORTHO05D005541 1.5e-96 357.1 322 54.7
Glyma.13G099400 Glycine max HOM05D004681 ORTHO05D005541 1.5e-96 357.1 318 62.6
A09p12190 Brassica napus HOM05D004681 ORTHO05D005541 1.9e-96 356.7 310 57.1
Sabra06G0058400 Salix brachista HOM05D004681 ORTHO05D005541 4.3e-96 355.5 338 59.5
Hund09046 Selenicereus undatus HOM05D004681 ORTHO05D005541 4.3e-96 355.5 325 56.0
BraA09t36865Z Brassica rapa HOM05D004681 ORTHO05D005541 5.6e-96 355.1 310 56.8
Glyma.15G164000 Glycine max HOM05D004681 ORTHO05D005541 5.6e-96 355.1 317 59.6
VMungo1215G0406 Vigna mungo HOM05D004681 ORTHO05D005541 5.6e-96 355.1 318 57.9
Potri.018G145508 Populus trichocarpa HOM05D004681 ORTHO05D005541 9.5e-96 354.4 285 62.8
Glyma.17G060700 Glycine max HOM05D004681 ORTHO05D005541 1.6e-95 353.6 318 61.6
Ah.09g230170 Amaranthus hybridus HOM05D004681 ORTHO05D005541 3.6e-95 352.4 321 56.1
BcaB07g31622 Brassica carinata HOM05D004681 ORTHO05D005541 1.0e-94 350.9 310 55.8
BcaB03g16704 Brassica carinata HOM05D004681 ORTHO05D005541 1.8e-94 350.1 310 55.8
Glyma.09G057900 Glycine max HOM05D004681 ORTHO05D005541 1.8e-94 350.1 318 59.1
Sed0004411 Sechium edule HOM05D004681 ORTHO05D005541 1.8e-94 350.1 264 63.3
AL3G52840 Arabidopsis lyrata HOM05D004681 ORTHO05D005541 4.0e-94 349.0 315 54.6
BcaC04g22869 Brassica carinata HOM05D004681 ORTHO05D005541 5.2e-94 348.6 310 55.2
C09p14440 Brassica napus HOM05D004681 ORTHO05D005541 6.8e-94 348.2 310 55.8
CSS0001946 Camellia sinensis var. sinensis HOM05D004681 ORTHO05D005541 6.8e-94 348.2 232 70.3
EL10Ac8g18317 Beta vulgaris HOM05D004681 ORTHO05D005541 1.2e-93 347.4 321 55.5
Thhalv10022785m.g Eutrema salsugineum HOM05D004681 ORTHO05D005541 3.4e-93 345.9 314 55.4
Nitab4.5_0000074g0040 Nicotiana tabacum HOM05D004681 ORTHO05D005541 3.4e-93 345.9 286 62.2
Aa31LG8G16140 Aethionema arabicum HOM05D004681 ORTHO05D005541 5.8e-93 345.1 310 57.4
Sp3g32480 Schrenkiella parvula HOM05D004681 ORTHO05D005541 7.5e-93 344.7 314 53.8
BolC9t54347H Brassica oleracea HOM05D004681 ORTHO05D005541 1.7e-92 343.6 311 55.0
BcaC06g36518 Brassica carinata HOM05D004681 ORTHO05D005541 2.2e-92 343.2 310 59.4
SGA_v2.0_scaffold21G09637 Striga asiatica HOM05D004681 ORTHO05D005541 2.2e-92 343.2 322 56.2
Lj4g0016729 Lotus japonicus HOM05D004681 ORTHO05D005541 8.3e-92 341.3 319 59.9
Carub.0003s3332 Capsella rubella HOM05D004681 ORTHO05D005541 1.1e-91 340.9 315 53.7
THA.LOC104819968 Tarenaya hassleriana HOM05D004681 ORTHO05D005541 1.1e-91 340.9 318 57.5
COL.COLO4_29315 Corchorus olitorius HOM05D004681 ORTHO05D005541 1.4e-91 340.5 318 57.9
Lj6g0005497 Lotus japonicus HOM05D004681 ORTHO05D005541 1.9e-91 340.1 318 61.0
AT2G19080 Arabidopsis thaliana HOM05D004681 ORTHO05D005541 3.2e-91 339.3 315 55.2
Lj7A127G13 Lonicera japonica HOM05D004681 ORTHO05D005541 5.4e-91 338.6 275 63.6
CARHR109600 Cardamine hirsuta HOM05D004681 ORTHO05D005541 1.0e-89 334.3 315 52.7
HanXRQChr10g0297571 Helianthus annuus HOM05D004681 ORTHO05D005541 3.9e-89 332.4 366 49.5
Lalb_Chr15g0084091 Lupinus albus HOM05D004681 ORTHO05D005541 3.9e-89 332.4 321 60.7
Lalb_Chr12g0199511 Lupinus albus HOM05D004681 ORTHO05D005541 4.3e-88 328.9 317 60.6
arahy.Tifrunner.gnm1.ann1.KM341F Arachis hypogaea HOM05D004681 ORTHO05D005541 7.3e-88 328.2 319 58.9
TPR.G5388 Trifolium pratense HOM05D004681 ORTHO05D005541 7.3e-88 328.2 328 53.7
unitig_578.g16069 Utricularia gibba HOM05D004681 ORTHO05D005541 9.5e-88 327.8 317 51.7
Medtr2g036910 Medicago truncatula HOM05D004681 ORTHO05D005541 8.1e-87 324.7 320 60.3
A07p01650 Brassica napus HOM05D004681 ORTHO05D005541 1.1e-86 324.3 320 54.1
BraA07t27967Z Brassica rapa HOM05D004681 ORTHO05D005541 1.1e-86 324.3 320 54.1
ATR0626G278 Amborella trichopoda HOM05D004681 ORTHO05D005541 1.4e-86 323.9 325 55.4
Phvul.009G237800 Phaseolus vulgaris HOM05D004681 ORTHO05D005541 1.8e-86 323.6 318 60.7
VMungo1309G2393 Vigna mungo HOM05D004681 ORTHO05D005541 3.1e-86 322.8 319 57.4
C07p03410 Brassica napus HOM05D004681 ORTHO05D005541 6.8e-86 321.6 310 55.2
BolC7t40740H Brassica oleracea HOM05D004681 ORTHO05D005541 6.8e-86 321.6 310 55.2
Medtr4g127630 Medicago truncatula HOM05D004681 ORTHO05D005541 1.2e-85 320.9 324 55.2
arahy.Tifrunner.gnm1.ann1.LX7F61 Arachis hypogaea HOM05D004681 ORTHO05D005541 2.6e-85 319.7 318 57.5
Ca_02042_v3 Cicer arietinum L. HOM05D004681 ORTHO05D005541 4.4e-85 318.9 317 58.0
Ca_21245_v3 Cicer arietinum L. HOM05D004410 ORTHO05D006134 4.9e-84 315.5 315 55.6
HPP92_004723 Vanilla planifolia HOM05D004681 ORTHO05D005541 6.4e-84 315.1 322 52.8
Psat0s736g0040 Pisum sativum HOM05D004681 ORTHO05D005541 1.6e-82 310.5 314 53.2
TPR.G9028 Trifolium pratense HOM05D004681 ORTHO05D005541 1.5e-77 293.9 320 56.9
Os06g0168000 Oryza sativa ssp. japonica HOM05D004681 ORTHO05D005541 2.6e-77 293.1 335 51.0
Nn2g12745 Nelumbo nucifera HOM05D004681 ORTHO05D005541 2.4e-75 286.6 323 54.2
AUR62021331 Chenopodium quinoa HOM05D004681 ORTHO05D005541 1.6e-74 283.9 326 47.9
HanXRQChr04g0105751 Helianthus annuus HOM05D004681 ORTHO05D005541 2.4e-70 270.0 191 64.9
Psat1g145840 Pisum sativum HOM05D004681 ORTHO05D005541 4.9e-68 262.3 201 63.7
DCAR_019823 Daucus carota HOM05D004410 ORTHO05D006134 5.4e-67 258.8 328 46.6
CDE06G1906 Ceratophyllum demersum HOM05D004681 ORTHO05D005541 3.0e-65 253.1 318 49.1
Haze_21984 Corylus avellana HOM05D004681 ORTHO05D005541 3.1e-62 243.0 246 53.7
TAR636G1425 Trochodendron aralioides HOM05D004681 ORTHO05D005541 2.6e-61 240.0 223 61.9
vmacro23062 Vaccinium macrocarpon HOM05D004681 ORTHO05D005541 3.4e-61 239.6 277 49.1
RcHm_v2.0_Chr7g0191431 Rosa chinensis HOM05D004681 ORTHO05D005541 2.2e-60 236.9 296 47.3
SHI02877 Sapria himalayana HOM05D004681 ORTHO05D005541 2.2e-60 236.9 486 34.6
Potri.018G147625 Populus trichocarpa HOM05D004681 ORTHO05D005541 5.4e-59 232.3 326 46.0
Pp3c4_10660 Physcomitrium patens HOM05D004681 ORTHO05D005541 1.5e-53 214.2 319 38.9
Zm00001eb375500 Zea mays HOM05D004681 ORTHO05D005541 1.5e-53 214.2 182 59.3
Pp3c12_12510 Physcomitrium patens HOM05D004681 ORTHO05D005541 2.4e-51 206.8 301 40.5
Mapoly0001s0301 Marchantia polymorpha HOM05D004681 ORTHO05D005541 1.2e-50 204.5 332 37.0
CAN.G609.4 Capsicum annuum HOM05D004681 ORTHO05D005541 1.4e-46 191.0 140 63.6
AagrBONN_evm.TU.Sc2ySwM_228.4196 Anthoceros agrestis HOM05D004681 ORTHO05D005541 1.9e-43 180.6 316 35.1
SMO358G0154 Selaginella moellendorffii HOM05D004681 ORTHO05D005541 9.6e-40 168.3 321 38.0
SGA_v2.0_scaffold41G15854 Striga asiatica HOM05D004681 ORTHO05D005541 9.6e-40 168.3 299 41.5
Ca_02046_v3 Cicer arietinum L. HOM05D004681 ORTHO05D005541 4.1e-38 162.9 225 51.6
Potri.001G065336 Populus trichocarpa HOM05D004681 ORTHO05D005541 5.5e-35 152.5 112 70.5
CAN.G497.61 Capsicum annuum HOM05D004681 ORTHO05D005541 6.9e-30 135.6 115 59.1
CAN.G266.1 Capsicum annuum HOM05D004681 ORTHO05D005541 3.0e-25 120.2 157 43.9
Potri.018G145080 Populus trichocarpa HOM05D004681 ORTHO05D005541 7.4e-24 115.5 170 52.4
Potri.001G064609 Populus trichocarpa HOM05D004681 ORTHO05D005541 6.3e-23 112.5 78 70.5
CBR_g39348 Chara braunii HOM05D000019 ORTHO05D000002 2.4e-22 110.5 185 35.1
Haze_21988 Corylus avellana HOM05D004681 ORTHO05D005541 4.1e-22 109.8 132 51.5
SMO367G0296 Selaginella moellendorffii HOM05D004681 ORTHO05D005541 3.9e-17 93.2 234 34.2
vmacro04071 Vaccinium macrocarpon HOM05D004681 ORTHO05D005541 6.7e-17 92.4 109 58.7
Potri.001G065000 Populus trichocarpa HOM05D004681 ORTHO05D005541 2.8e-15 87.0 100 46.0
Haze_21985 Corylus avellana HOM05D004681 ORTHO05D005541 2.4e-14 84.0 112 48.2
QL05p087685 Quercus lobata HOM05D004681 ORTHO05D005541 9.1e-14 82.0 198 32.8
HanXRQChr04g0105741 Helianthus annuus HOM05D004681 ORTHO05D005541 4.5e-13 79.7 113 43.4
MELO3C029108.2 Cucumis melo HOM05D004681 ORTHO05D005541 4.7e-10 69.7 46 63.0
AUR62034598 Chenopodium quinoa HOM05D022644 ORTHO05D003557 1.2e-08 65.1 52 51.9
PRCOL_00000454 Prasinoderma coloniale HOM05D004681 ORTHO05D005541 2.0e-08 64.3 246 26.8
SMO367G1182 Selaginella moellendorffii HOM05D004681 ORTHO05D005541 3.7e-07 60.1 169 31.4


User provided reference genes

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