Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT11G1020 Cannabis sativa HOM05D003936 ORTHO05D004747 2.4e-227 792.0 439 100.0
Prupe.3G095300 Prunus persica HOM05D003936 ORTHO05D004747 9.1e-110 401.4 458 55.2
Dinv23312 Davidia involucrata HOM05D003936 ORTHO05D004747 2.0e-109 400.2 456 54.8
Duzib212G0318 Durio zibethinus HOM05D003936 ORTHO05D004747 3.8e-108 396.0 455 55.8
Cpa.g.sc10.123 Carica papaya HOM05D003936 ORTHO05D004747 1.0e-105 387.9 458 53.7
CSS0006918 Camellia sinensis var. sinensis HOM05D003936 ORTHO05D004747 9.8e-104 381.3 476 52.9
QL05p034110 Quercus lobata HOM05D003936 ORTHO05D004747 2.8e-103 379.8 474 56.3
Cfa001907 Carpinus fangiana HOM05D003936 ORTHO05D004747 6.3e-103 378.6 473 53.7
Actinidia25443 Actinidia chinensis HOM05D003936 ORTHO05D004747 1.8e-102 377.1 452 55.1
CiPaw.01G252100 Carya illinoinensis HOM05D003936 ORTHO05D004747 1.7e-100 370.5 471 52.7
CsaV3_4G001790 Cucumis sativus L. HOM05D003936 ORTHO05D004747 1.5e-99 367.5 454 50.2
MELO3C017854.2 Cucumis melo HOM05D003936 ORTHO05D004747 1.9e-99 367.1 443 50.1
TWI12G0163 Tripterygium wilfordii HOM05D003936 ORTHO05D004747 1.9e-99 367.1 462 48.7
Nn2g12258 Nelumbo nucifera HOM05D003936 ORTHO05D004747 3.3e-99 366.3 460 49.8
Actinidia18230 Actinidia chinensis HOM05D003936 ORTHO05D004747 4.3e-99 365.9 455 54.1
TAR636G3155 Trochodendron aralioides HOM05D003936 ORTHO05D004747 7.3e-99 365.2 472 53.6
Sed0026159 Sechium edule HOM05D003936 ORTHO05D004747 8.0e-98 361.7 461 47.7
Thecc.06G036500 Theobroma cacao HOM05D003936 ORTHO05D004747 5.2e-97 359.0 459 49.9
Ciclev10025627m.g Citrus clementina HOM05D003936 ORTHO05D004747 9.2e-94 348.2 461 50.8
MD17G1219800 Malus domestica HOM05D003936 ORTHO05D004747 6.0e-93 345.5 467 51.6
Gorai.010G223800 Gossypium raimondii HOM05D003936 ORTHO05D004747 6.6e-92 342.0 452 48.0
Potri.003G178800 Populus trichocarpa HOM05D003936 ORTHO05D004747 1.5e-91 340.9 474 49.6
ClCG07G012350 Citrullus lanatus HOM05D003936 ORTHO05D004747 4.3e-91 339.3 529 44.2
Oeu029910.1 Olea europaea HOM05D003936 ORTHO05D004747 4.3e-91 339.3 451 47.5
Gohir.D06G190700 Gossypium hirsutum HOM05D003936 ORTHO05D004747 7.3e-91 338.6 452 47.8
Eucgr.F03943 Eucalyptus grandis HOM05D003936 ORTHO05D004747 1.2e-90 337.8 469 46.1
Atru.chr10.2382 Acer truncatum HOM05D003936 ORTHO05D004747 1.6e-90 337.4 455 50.3
Rhsim08G0208400 Rhododendron simsii HOM05D003936 ORTHO05D004747 2.3e-89 333.6 487 45.2
Lalb_Chr25g0279171 Lupinus albus HOM05D003936 ORTHO05D004747 8.9e-89 331.6 459 45.1
arahy.Tifrunner.gnm1.ann1.17KRJ7 Arachis hypogaea HOM05D003936 ORTHO05D004747 1.5e-88 330.9 448 48.4
arahy.Tifrunner.gnm1.ann1.6RSI2J Arachis hypogaea HOM05D003936 ORTHO05D004747 1.5e-88 330.9 448 48.4
Lj3g0027357 Lotus japonicus HOM05D003936 ORTHO05D004747 1.9e-86 323.9 444 49.3
Sopen08g002790 Solanum pennellii HOM05D003936 ORTHO05D004747 4.1e-86 322.8 365 52.3
COL.COLO4_11826 Corchorus olitorius HOM05D003936 ORTHO05D004747 5.4e-86 322.4 623 41.4
MSTRG.11168 Avicennia marina HOM05D003936 ORTHO05D004747 9.2e-86 321.6 441 45.1
Sed0007390 Sechium edule HOM05D003936 ORTHO05D004747 9.2e-86 321.6 467 47.5
Gohir.A06G183700 Gossypium hirsutum HOM05D003936 ORTHO05D004747 1.2e-85 321.2 452 45.8
Nitab4.5_0000114g0150 Nicotiana tabacum HOM05D003936 ORTHO05D004747 4.6e-85 319.3 357 51.0
BraA07t32011Z Brassica rapa HOM05D003936 ORTHO05D004747 1.5e-83 314.3 439 44.4
RcHm_v2.0_Chr2g0133511 Rosa chinensis HOM05D003936 ORTHO05D004747 1.5e-83 314.3 447 47.4
A07p45080 Brassica napus HOM05D003936 ORTHO05D004747 5.6e-83 312.4 439 44.0
vmacro17364 Vaccinium macrocarpon HOM05D003936 ORTHO05D004747 9.5e-83 311.6 492 46.5
BolC2t09719H Brassica oleracea HOM05D003936 ORTHO05D004747 3.6e-82 309.7 439 43.3
BcaC03g15942 Brassica carinata HOM05D003936 ORTHO05D004747 6.2e-82 308.9 439 43.3
Carub.0002s2693 Capsella rubella HOM05D003936 ORTHO05D004747 8.1e-82 308.5 453 46.6
THA.LOC104812450 Tarenaya hassleriana HOM05D003936 ORTHO05D004747 8.1e-82 308.5 459 46.6
BolC6t40405H Brassica oleracea HOM05D003936 ORTHO05D004747 1.1e-81 308.1 438 43.6
Sp5g35150 Schrenkiella parvula HOM05D003936 ORTHO05D004747 1.1e-81 308.1 442 45.9
ATR0584G049 Amborella trichopoda HOM05D003936 ORTHO05D004747 1.4e-81 307.8 401 47.6
Ca_29510_v3 Cicer arietinum L. HOM05D003936 ORTHO05D004747 1.4e-81 307.8 464 44.6
CARHR073900 Cardamine hirsuta HOM05D003936 ORTHO05D004747 2.3e-81 307.0 443 43.8
C02p37040 Brassica napus HOM05D003936 ORTHO05D004747 5.2e-81 305.8 438 43.2
C06p53910 Brassica napus HOM05D003936 ORTHO05D004747 5.2e-81 305.8 436 43.6
Thhalv10018593m.g Eutrema salsugineum HOM05D003936 ORTHO05D004747 5.2e-81 305.8 446 42.8
Sabra03G0131100 Salix brachista HOM05D003936 ORTHO05D004747 2.0e-80 303.9 506 44.9
FAN02G3242 Fragaria x ananassa HOM05D003936 ORTHO05D004747 2.6e-80 303.5 461 49.9
BcaB05g25240 Brassica carinata HOM05D003936 ORTHO05D004747 4.4e-80 302.8 434 44.0
BraA02t07326Z Brassica rapa HOM05D003936 ORTHO05D004747 9.9e-80 301.6 437 43.7
FvH4_6g28960 Fragaria vesca HOM05D003936 ORTHO05D004747 9.9e-80 301.6 449 51.0
A02p23300 Brassica napus HOM05D003936 ORTHO05D004747 1.7e-79 300.8 437 43.5
PGR102G1525 Punica granatum HOM05D003936 ORTHO05D004747 1.7e-79 300.8 461 49.9
Aa31LG4G900 Aethionema arabicum HOM05D003936 ORTHO05D004747 2.2e-79 300.4 458 45.6
Aqoxy7G03521 Aquilegia oxysepala HOM05D003936 ORTHO05D004747 8.3e-79 298.5 461 45.1
Hma1.2p1_0135F.1_g061770 Hydrangea macrophylla HOM05D003936 ORTHO05D004747 8.3e-79 298.5 392 49.5
vmacro19035 Vaccinium macrocarpon HOM05D003936 ORTHO05D004747 8.3e-79 298.5 333 52.3
FAN14G5707 Fragaria x ananassa HOM05D003936 ORTHO05D004747 2.4e-78 297.0 460 50.2
VMungo0331G1494 Vigna mungo HOM05D003936 ORTHO05D004747 2.4e-78 297.0 357 49.0
Solyc08g006840.3 Solanum lycopersicum HOM05D003936 ORTHO05D004747 7.1e-78 295.4 302 54.0
unitig_27.g24954 Utricularia gibba HOM05D003936 ORTHO05D004747 1.6e-77 294.3 397 46.1
CDE02G1505 Ceratophyllum demersum HOM05D003936 ORTHO05D004747 3.5e-77 293.1 457 44.9
AUR62011450 Chenopodium quinoa HOM05D003936 ORTHO05D004747 3.5e-77 293.1 421 46.8
Phvul.010G158900 Phaseolus vulgaris HOM05D003936 ORTHO05D004747 3.5e-77 293.1 443 44.5
AT1G80620 Arabidopsis thaliana HOM05D003936 ORTHO05D004747 4.6e-77 292.7 449 45.0
MBI14_g15650_MAGBIO Magnolia biondii HOM05D003936 ORTHO05D004747 4.6e-77 292.7 369 48.2
FAN05G1488 Fragaria x ananassa HOM05D003936 ORTHO05D004747 1.3e-76 291.2 461 48.6
Psat7g258560 Pisum sativum HOM05D003936 ORTHO05D004747 8.6e-76 288.5 461 41.6
FAN09G0504 Fragaria x ananassa HOM05D003936 ORTHO05D004747 1.1e-75 288.1 461 48.4
Medtr4g009100 Medicago truncatula HOM05D003936 ORTHO05D004747 4.3e-75 286.2 456 41.2
Migut.I00724 Erythranthe guttata HOM05D003936 ORTHO05D004747 5.6e-75 285.8 409 44.0
RcHm_v2.0_Chr4g0407691 Rosa chinensis HOM05D003936 ORTHO05D004747 9.6e-75 285.0 432 47.2
TPR.G29720 Trifolium pratense HOM05D003936 ORTHO05D004747 2.1e-74 283.9 463 41.5
EL10Ac9g21843 Beta vulgaris HOM05D003936 ORTHO05D004747 2.8e-74 283.5 423 43.3
Lj9A496T67 Lonicera japonica HOM05D003936 ORTHO05D004747 1.1e-73 281.6 455 47.7
Lj2A141T58 Lonicera japonica HOM05D003936 ORTHO05D004747 1.4e-73 281.2 421 45.1
PSO478G0782 Papaver somniferum HOM05D003936 ORTHO05D004747 1.4e-73 281.2 347 48.7
HPP92_027846 Vanilla planifolia HOM05D003936 ORTHO05D004747 1.8e-73 280.8 412 47.1
C05p14060 Brassica napus HOM05D003936 ORTHO05D004747 4.4e-72 276.2 446 44.2
BolC8t52022H Brassica oleracea HOM05D003936 ORTHO05D004747 4.4e-72 276.2 443 42.0
A06p11880 Brassica napus HOM05D003936 ORTHO05D004747 5.8e-72 275.8 444 44.8
BolC5t30137H Brassica oleracea HOM05D003936 ORTHO05D004747 5.8e-72 275.8 446 44.2
BraA06t24358Z Brassica rapa HOM05D003936 ORTHO05D004747 5.8e-72 275.8 444 44.8
AUR62016607 Chenopodium quinoa HOM05D003936 ORTHO05D004747 5.8e-72 275.8 418 44.7
C08p44760 Brassica napus HOM05D003936 ORTHO05D004747 9.9e-72 275.0 443 41.5
DCAR_016286 Daucus carota HOM05D003936 ORTHO05D004747 1.7e-71 274.2 421 42.3
Sp1g14110 Schrenkiella parvula HOM05D003936 ORTHO05D004747 1.7e-71 274.2 453 42.8
CARHR016320 Cardamine hirsuta HOM05D003936 ORTHO05D004747 3.8e-71 273.1 452 41.8
PSO210G7358 Papaver somniferum HOM05D003936 ORTHO05D004747 3.8e-71 273.1 351 48.1
AL2G40830 Arabidopsis lyrata HOM05D003936 ORTHO05D004747 4.9e-71 272.7 470 41.3
Manes.04G106400 Manihot esculenta HOM05D003936 ORTHO05D004747 4.9e-71 272.7 433 44.1
Glyma.07G026400 Glycine max HOM05D003936 ORTHO05D004747 5.4e-70 269.2 401 42.6
AL1G27960 Arabidopsis lyrata HOM05D003936 ORTHO05D004747 7.1e-70 268.9 462 40.3
Thhalv10007635m.g Eutrema salsugineum HOM05D003936 ORTHO05D004747 2.1e-69 267.3 456 40.8
FAN05G0608 Fragaria x ananassa HOM05D003936 ORTHO05D004747 6.0e-69 265.8 443 48.5
Carub.0001s1560 Capsella rubella HOM05D003936 ORTHO05D004747 1.1e-67 261.5 456 43.2
BraA09t41490Z Brassica rapa HOM05D003936 ORTHO05D004747 1.9e-67 260.8 441 40.4
A09p61160 Brassica napus HOM05D003936 ORTHO05D004747 2.5e-67 260.4 441 40.4
PSO782G4560 Papaver somniferum HOM05D003936 ORTHO05D004747 2.5e-67 260.4 351 46.7
Hund00590 Selenicereus undatus HOM05D003936 ORTHO05D004747 2.5e-67 260.4 427 44.5
Cc04_g04830 Coffea canephora HOM05D003936 ORTHO05D004747 9.6e-67 258.5 252 59.1
BcaC07g41479 Brassica carinata HOM05D003936 ORTHO05D004747 8.1e-66 255.4 439 39.4
AT1G15810 Arabidopsis thaliana HOM05D003936 ORTHO05D004747 1.8e-65 254.2 344 44.2
SGA_v2.0_scaffold5G02746 Striga asiatica HOM05D003936 ORTHO05D004747 1.8e-65 254.2 450 39.6
Peaxi162Scf00045g02127 Petunia axillaris HOM05D003936 ORTHO05D004747 9.0e-65 251.9 341 45.7
Lsat_1_v5_gn_8_9281 Lactuca sativa HOM05D003936 ORTHO05D004747 1.7e-63 247.7 397 42.8
arahy.Tifrunner.gnm1.ann1.9YJ9LX Arachis hypogaea HOM05D003936 ORTHO05D004747 2.9e-63 246.9 474 40.1
Sc10g0006130 Simmondsia chinensis HOM05D003936 ORTHO05D004747 1.1e-62 245.0 376 46.5
ECA232G5052 Erigeron canadensis HOM05D003936 ORTHO05D004747 2.4e-62 243.8 359 46.2
HanXRQChr16g0500031 Helianthus annuus HOM05D003936 ORTHO05D004747 7.1e-62 242.3 314 47.8
arahy.Tifrunner.gnm1.ann1.ZV9XE5 Arachis hypogaea HOM05D003936 ORTHO05D004747 6.0e-61 239.2 470 40.0
Zm00001eb192140 Zea mays HOM05D003936 ORTHO05D004747 1.5e-59 234.6 406 41.9
Ah.02g127880 Amaranthus hybridus HOM05D003936 ORTHO05D004747 1.9e-59 234.2 436 38.1
Dinv30485 Davidia involucrata HOM05D003936 ORTHO05D004747 3.3e-59 233.4 407 42.5
GSVIVG01026722001 Vitis vinifera HOM05D003936 ORTHO05D004747 1.4e-57 228.0 142 79.6
SHI11258 Sapria himalayana HOM05D003936 ORTHO05D004747 6.9e-57 225.7 487 39.4
Os02g0803200 Oryza sativa ssp. japonica HOM05D003936 ORTHO05D004747 9.9e-56 221.9 406 39.7
MD09G1223400 Malus domestica HOM05D003936 ORTHO05D004747 1.7e-55 221.1 202 55.9
SalBow6G1756 Salvia bowleyana HOM05D003936 ORTHO05D004747 2.9e-55 220.3 428 37.9
SalBow6G6295 Salvia bowleyana HOM05D003936 ORTHO05D004747 2.9e-55 220.3 428 37.9
RcHm_v2.0_Chr6g0246971 Rosa chinensis HOM05D003936 ORTHO05D004747 1.8e-49 201.1 246 51.6
AL1040U10010 Arabidopsis lyrata HOM05D003936 ORTHO05D004747 3.1e-49 200.3 113 85.0
Nitab4.5_0012293g0020 Nicotiana tabacum HOM05D003936 ORTHO05D004747 4.5e-48 196.4 291 40.2
Os06g0176150 Oryza sativa ssp. japonica HOM05D003936 ORTHO05D004747 7.6e-48 195.7 117 81.2
Os06g0177250 Oryza sativa ssp. japonica HOM05D003936 ORTHO05D004747 7.6e-48 195.7 117 81.2
QL08p064442 Quercus lobata HOM05D003936 ORTHO05D004747 7.9e-45 185.7 102 85.3
RcHm_v2.0_Chr2g0145231 Rosa chinensis HOM05D003936 ORTHO05D004747 2.2e-39 167.5 116 75.0
CDE09G1350 Ceratophyllum demersum HOM05D003936 ORTHO05D004747 4.2e-38 163.3 95 82.1
SEGI_32691 Sequoiadendron giganteum HOM05D003936 ORTHO05D004747 1.0e-36 158.7 306 37.9
Pp3c1_21620 Physcomitrium patens HOM05D003936 ORTHO05D004747 4.8e-34 149.8 144 49.3
Mapoly0065s0028 Marchantia polymorpha HOM05D003936 ORTHO05D004747 6.3e-34 149.4 142 53.5
Zm00001eb320360 Zea mays HOM05D003936 ORTHO05D004747 3.1e-33 147.1 367 35.1
GSVIVG01026738001 Vitis vinifera HOM05D003936 ORTHO05D004747 3.4e-32 143.7 78 88.5
QL08p064447 Quercus lobata HOM05D003936 ORTHO05D004747 2.5e-30 137.5 333 36.9
SMO164G0146 Selaginella moellendorffii HOM05D003936 ORTHO05D004747 2.1e-29 134.4 201 41.8
BcaB05g25239 Brassica carinata HOM05D003936 ORTHO05D004747 2.6e-24 117.5 64 85.9
CiPaw.02G160600 Carya illinoinensis HOM05D003936 ORTHO05D004747 3.4e-24 117.1 341 33.4
PSO832G3729 Papaver somniferum HOM05D003936 ORTHO05D004747 1.1e-19 102.1 66 75.8
CDE09G0364 Ceratophyllum demersum HOM05D003936 ORTHO05D004747 2.6e-19 100.9 294 36.1
Ca_25898_v3 Cicer arietinum L. HOM05D003936 ORTHO05D004747 9.7e-19 99.0 331 32.0
CBR_g28520 Chara braunii HOM05D003936 ORTHO05D004747 3.7e-18 97.1 109 48.6
Nitab4.5_0009138g0020 Nicotiana tabacum HOM05D003936 ORTHO05D004747 6.3e-18 96.3 61 75.4
AagrBONN_evm.TU.Sc2ySwM_117.728 Anthoceros agrestis HOM05D003936 ORTHO05D004747 2.4e-17 94.4 88 53.4
MCO16G694 Micromonas commoda HOM05D003936 ORTHO05D003028 3.1e-17 94.0 102 48.0
RcHm_v2.0_Chr2g0171141 Rosa chinensis HOM05D003936 ORTHO05D004747 5.0e-15 86.7 55 78.2
AagrBONN_evm.TU.Sc2ySwM_368.3374 Anthoceros agrestis HOM05D003936 ORTHO05D004747 6.5e-15 86.3 110 48.2
Nitab4.5_0012293g0040 Nicotiana tabacum HOM05D003936 ORTHO05D004747 1.1e-11 75.5 37 89.2
Cfa001908 Carpinus fangiana HOM05D003936 ORTHO05D004747 9.7e-11 72.4 199 33.2
Glyma.08G216000 Glycine max HOM05D003936 ORTHO05D004747 3.1e-09 67.4 35 80.0
EL10Ac7g16358 Beta vulgaris HOM05D003327 ORTHO05D004535 4.1e-09 67.0 52 61.5
PRCOL_00001607 Prasinoderma coloniale HOM05D003936 ORTHO05D004747 9.1e-09 65.9 219 27.9
SMO172G0122 Selaginella moellendorffii HOM05D003936 ORTHO05D004747 7.7e-08 62.8 67 52.2
Cre17.g731250 Chlamydomonas reinhardtii HOM05D003936 ORTHO05D004747 2.2e-07 61.2 102 34.3
Ca_29111_v3 Cicer arietinum L. HOM05D003936 ORTHO05D004747 1.1e-06 58.9 77 44.2
EL10Ac4g08132 Beta vulgaris HOM05D003936 ORTHO05D004747 9.4e-06 55.8 54 50.0
EL10Ac4g08139 Beta vulgaris HOM05D003936 ORTHO05D004747 9.4e-06 55.8 54 50.0
EL10Ac4g09849 Beta vulgaris HOM05D003936 ORTHO05D004747 9.4e-06 55.8 54 50.0


User provided reference genes

Program Settings