Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT11G0973 Cannabis sativa HOM05D007392 ORTHO05D009181 8.2e-79 297.0 148 100.0
Cfa009557 Carpinus fangiana HOM05D007392 ORTHO05D009181 1.2e-32 143.7 140 60.7
CiPaw.13G177600 Carya illinoinensis HOM05D007392 ORTHO05D009181 7.8e-29 131.0 141 57.4
MD03G1003200 Malus domestica HOM05D007392 ORTHO05D009181 5.0e-28 128.3 152 50.7
QL01p003594 Quercus lobata HOM05D007392 ORTHO05D009181 1.1e-27 127.1 167 48.5
TWI34G1824 Tripterygium wilfordii HOM05D007392 ORTHO05D009181 4.3e-27 125.2 147 49.7
FAN11G3804 Fragaria x ananassa HOM05D007392 ORTHO05D009181 5.6e-27 124.8 143 52.4
Dinv13477 Davidia involucrata HOM05D007392 ORTHO05D009181 1.6e-26 123.2 143 54.5
Manes.15G109800 Manihot esculenta HOM05D007392 ORTHO05D009181 6.2e-26 121.3 149 53.7
FvH4_3g45780 Fragaria vesca HOM05D007392 ORTHO05D009181 1.1e-25 120.6 144 51.4
RcHm_v2.0_Chr5g0083851 Rosa chinensis HOM05D007392 ORTHO05D009181 1.4e-25 120.2 144 50.7
GSVIVG01025476001 Vitis vinifera HOM05D007392 ORTHO05D009181 2.3e-25 119.4 141 53.9
Lsat_1_v5_gn_6_55560 Lactuca sativa HOM05D007392 ORTHO05D009181 4.0e-25 118.6 144 53.5
Potri.003G221800 Populus trichocarpa HOM05D007392 ORTHO05D009181 1.5e-24 116.7 143 52.4
Potri.001G003300 Populus trichocarpa HOM05D007392 ORTHO05D009181 3.4e-24 115.5 143 53.8
ECA233G2404 Erigeron canadensis HOM05D007392 ORTHO05D009181 5.8e-24 114.8 151 48.3
FAN16G0802 Fragaria x ananassa HOM05D007392 ORTHO05D009181 2.2e-23 112.8 145 50.3
Actinidia00905 Actinidia chinensis HOM05D007392 ORTHO05D009181 1.1e-22 110.5 142 50.7
A05p36050 Brassica napus HOM05D007392 ORTHO05D009181 1.1e-22 110.5 173 43.9
MELO3C015574.2 Cucumis melo HOM05D007392 ORTHO05D009181 1.4e-22 110.2 141 48.2
Aqoxy2G00525 Aquilegia oxysepala HOM05D007392 ORTHO05D009181 4.1e-22 108.6 136 50.7
Sed0020032 Sechium edule HOM05D007392 ORTHO05D009181 4.1e-22 108.6 146 45.9
Ciclev10017000m.g Citrus clementina HOM05D007392 ORTHO05D009181 5.4e-22 108.2 158 43.0
C01p51590 Brassica napus HOM05D007392 ORTHO05D009181 9.2e-22 107.5 157 47.1
BcaC05g29176 Brassica carinata HOM05D007392 ORTHO05D009181 1.6e-21 106.7 178 43.8
Thhalv10021633m.g Eutrema salsugineum HOM05D007392 ORTHO05D009181 1.6e-21 106.7 180 42.8
Carub.0003s1294 Capsella rubella HOM05D007392 ORTHO05D009181 2.1e-21 106.3 162 43.2
CsaV3_1G041630 Cucumis sativus L. HOM05D007392 ORTHO05D009181 2.1e-21 106.3 141 47.5
BolC1t05102H Brassica oleracea HOM05D007392 ORTHO05D009181 2.7e-21 105.9 157 47.1
ClCG03G014560 Citrullus lanatus HOM05D007392 ORTHO05D009181 1.0e-20 104.0 136 51.5
TAR623G1707 Trochodendron aralioides HOM05D007392 ORTHO05D009181 1.0e-20 104.0 140 48.6
AT3G13480 Arabidopsis thaliana HOM05D007392 ORTHO05D009181 2.3e-20 102.8 183 41.0
MD11G1003000 Malus domestica HOM05D007392 ORTHO05D009181 3.0e-20 102.4 148 44.6
Actinidia16241 Actinidia chinensis HOM05D007392 ORTHO05D009181 5.1e-20 101.7 138 51.4
Cc01_g00150 Coffea canephora HOM05D007392 ORTHO05D009181 5.1e-20 101.7 145 49.7
PSO384G3152 Papaver somniferum HOM05D007392 ORTHO05D009181 5.1e-20 101.7 140 44.3
PSO339G3225 Papaver somniferum HOM05D007392 ORTHO05D009181 6.6e-20 101.3 141 44.7
A01p40100 Brassica napus HOM05D007392 ORTHO05D009181 8.6e-20 100.9 157 45.2
BraA01t04052Z Brassica rapa HOM05D007392 ORTHO05D009181 8.6e-20 100.9 157 45.2
BcaB04g18766 Brassica carinata HOM05D007392 ORTHO05D009181 1.1e-19 100.5 156 43.6
CARHR088140 Cardamine hirsuta HOM05D007392 ORTHO05D009181 1.5e-19 100.1 172 41.3
Prupe.6G002800 Prunus persica HOM05D007392 ORTHO05D009181 1.5e-19 100.1 120 53.3
Sp3g11690 Schrenkiella parvula HOM05D007392 ORTHO05D009181 4.3e-19 98.6 181 40.9
Nn2g15869 Nelumbo nucifera HOM05D007392 ORTHO05D009181 7.3e-19 97.8 143 43.4
Sc09g0000040 Simmondsia chinensis HOM05D007392 ORTHO05D009181 1.2e-18 97.1 162 42.0
THA.LOC104810320 Tarenaya hassleriana HOM05D007392 ORTHO05D009181 2.8e-18 95.9 152 43.4
FAN25G2102 Fragaria x ananassa HOM05D007392 ORTHO05D009181 4.7e-18 95.1 124 50.8
AL3G25390 Arabidopsis lyrata HOM05D007392 ORTHO05D009181 8.1e-18 94.4 174 40.8
SalBow3G3897 Salvia bowleyana HOM05D007392 ORTHO05D009181 2.3e-17 92.8 142 45.8
Oeu004754.1 Olea europaea HOM05D007392 ORTHO05D009181 4.0e-17 92.0 118 49.2
SGA_v2.0_scaffold6G03356 Striga asiatica HOM05D007392 ORTHO05D009181 3.4e-16 89.0 146 42.5
Rhsim13G0233100 Rhododendron simsii HOM05D007392 ORTHO05D009181 7.5e-16 87.8 126 48.4
Sabra03G0165000 Salix brachista HOM05D007392 ORTHO05D009181 2.2e-15 86.3 121 49.6
PGR119G0135 Punica granatum HOM05D007392 ORTHO05D009181 3.7e-15 85.5 141 41.8
PGSC0003DMG402032165 Solanum tuberosum HOM05D007392 ORTHO05D009181 4.9e-15 85.1 140 42.9
BraA03t12977Z Brassica rapa HOM05D007392 ORTHO05D009181 8.3e-15 84.3 167 37.1
CAN.G1834.12 Capsicum annuum HOM05D007392 ORTHO05D009181 8.3e-15 84.3 140 43.6
Sopen01g001550 Solanum pennellii HOM05D007392 ORTHO05D009181 8.3e-15 84.3 140 45.7
C05p54400 Brassica napus HOM05D007392 ORTHO05D009181 1.1e-14 84.0 155 41.3
Oeu059652.1 Olea europaea HOM05D007392 ORTHO05D009181 1.9e-14 83.2 117 48.7
Solyc01g005530.3 Solanum lycopersicum HOM05D007392 ORTHO05D009181 2.4e-14 82.8 140 45.0
Nn7g35849 Nelumbo nucifera HOM05D007392 ORTHO05D009181 3.2e-14 82.4 124 42.7
Eucgr.J01763 Eucalyptus grandis HOM05D007392 ORTHO05D009181 7.1e-14 81.3 132 40.2
Peaxi162Scf00705g00062 Petunia axillaris HOM05D007392 ORTHO05D009181 9.2e-14 80.9 136 44.1
Nitab4.5_0006195g0060 Nicotiana tabacum HOM05D007392 ORTHO05D009181 3.5e-13 79.0 120 44.2
BcaC01g03991 Brassica carinata HOM05D007392 ORTHO05D009181 4.6e-13 78.6 148 39.9
SGA_v2.0_scaffold6G03313 Striga asiatica HOM05D007392 ORTHO05D009181 4.6e-13 78.6 142 42.3
Migut.D02593 Erythranthe guttata HOM05D007392 ORTHO05D009181 1.3e-12 77.0 141 42.6
Aa31LG8G680 Aethionema arabicum HOM05D007392 ORTHO05D009181 2.3e-12 76.3 152 38.2
DCAR_032194 Daucus carota HOM05D007392 ORTHO05D009181 3.0e-12 75.9 122 36.9
Nitab4.5_0000551g0100 Nicotiana tabacum HOM05D007392 ORTHO05D009181 3.9e-12 75.5 118 44.1
Migut.D02571 Erythranthe guttata HOM05D007392 ORTHO05D009181 6.6e-12 74.7 142 45.1
Cpa.g.sc119.37 Carica papaya HOM05D007392 ORTHO05D009181 8.6e-12 74.3 113 46.0
EL10Ac4g10390 Beta vulgaris HOM05D007392 ORTHO05D009181 1.5e-11 73.6 131 38.9
C03p46430 Brassica napus HOM05D007392 ORTHO05D009181 2.5e-11 72.8 114 43.9
C03p46400 Brassica napus HOM05D007392 ORTHO05D009181 3.3e-11 72.4 142 39.4
Sabra01G0002400 Salix brachista HOM05D007392 ORTHO05D009181 4.3e-11 72.0 138 45.7
Prupe.8G040000 Prunus persica HOM05D003947 ORTHO05D004614 2.4e-09 66.2 148 32.4
Cfa018286 Carpinus fangiana HOM05D003947 ORTHO05D004614 3.1e-09 65.9 148 31.8
Manes.18G094500 Manihot esculenta HOM05D003947 ORTHO05D004614 8.9e-09 64.3 148 33.8
TWI60G0849 Tripterygium wilfordii HOM05D003947 ORTHO05D004614 1.2e-08 63.9 148 33.1
vmacro04261 Vaccinium macrocarpon HOM05D007392 ORTHO05D009181 1.5e-08 63.5 112 46.4
AT1G55475 Arabidopsis thaliana HOM05D007392 ORTHO05D009181 3.4e-08 62.4 123 37.4
Migut.N00543 Erythranthe guttata HOM05D007392 ORTHO05D009181 5.8e-08 61.6 136 38.2
MD05G1032900 Malus domestica HOM05D003947 ORTHO05D004614 7.6e-08 61.2 148 31.1
Potri.005G196300 Populus trichocarpa HOM05D003947 ORTHO05D004614 7.6e-08 61.2 148 32.4
PGR044G0664 Punica granatum HOM05D003947 ORTHO05D004614 7.6e-08 61.2 152 34.2
AL1G63490 Arabidopsis lyrata HOM05D007392 ORTHO05D009181 9.9e-08 60.8 123 35.0
MSTRG.20935 Avicennia marina HOM05D000287 ORTHO05D000319 1.3e-07 60.5 116 37.1
BraA05t22411Z Brassica rapa HOM05D001472 ORTHO05D007811 1.7e-07 60.1 121 38.0
TWI32G0514 Tripterygium wilfordii HOM05D003947 ORTHO05D004614 2.2e-07 59.7 148 34.5
Atru.chr13.2012 Acer truncatum HOM05D003947 ORTHO05D004614 2.9e-07 59.3 151 31.1
Glyma.20G169600 Glycine max HOM05D003947 ORTHO05D004614 2.9e-07 59.3 149 32.2
Solyc04g071970.4 Solanum lycopersicum HOM05D003947 ORTHO05D004614 2.9e-07 59.3 149 31.5
Sopen04g027950 Solanum pennellii HOM05D003947 ORTHO05D004614 2.9e-07 59.3 149 31.5
PGSC0003DMG401025066 Solanum tuberosum HOM05D003947 ORTHO05D004614 2.9e-07 59.3 146 31.5
HPP92_024836 Vanilla planifolia HOM05D007392 ORTHO05D009181 2.9e-07 59.3 137 38.0
HPP92_026624 Vanilla planifolia HOM05D007392 ORTHO05D009181 2.9e-07 59.3 137 38.0
CiPaw.15G012800 Carya illinoinensis HOM05D003947 ORTHO05D004614 4.9e-07 58.5 149 31.5
Lalb_Chr21g0305571 Lupinus albus HOM05D003947 ORTHO05D004614 4.9e-07 58.5 149 30.9
MD10G1033900 Malus domestica HOM05D003947 ORTHO05D004614 4.9e-07 58.5 148 29.7
TAR376G1220 Trochodendron aralioides HOM05D003947 ORTHO05D004614 4.9e-07 58.5 144 31.2
vmacro23199 Vaccinium macrocarpon HOM05D007392 ORTHO05D009181 4.9e-07 58.5 84 51.2
Psat6g190840 Pisum sativum HOM05D003947 ORTHO05D004614 6.4e-07 58.2 149 29.5
Aa31LG10G780 Aethionema arabicum HOM05D007392 ORTHO05D009181 8.4e-07 57.8 94 42.6
BolC5t34105H Brassica oleracea HOM05D001472 ORTHO05D007811 8.4e-07 57.8 121 39.7
Ciclev10002453m.g Citrus clementina HOM05D003947 ORTHO05D004614 8.4e-07 57.8 151 35.8
Thecc.08G158700 Theobroma cacao HOM05D003947 ORTHO05D004614 8.4e-07 57.8 148 31.8
CANSAT25G3237 Cannabis sativa HOM05D003947 ORTHO05D004614 1.1e-06 57.4 147 32.7
Gohir.D05G247600 Gossypium hirsutum HOM05D003947 ORTHO05D004614 1.1e-06 57.4 148 31.8
CiPaw.16G008700 Carya illinoinensis HOM05D003947 ORTHO05D004614 1.4e-06 57.0 141 30.5
Carub.0001s4396 Capsella rubella HOM05D007392 ORTHO05D009181 1.9e-06 56.6 126 36.5
Sed0008617 Sechium edule HOM05D003947 ORTHO05D004614 1.9e-06 56.6 150 30.7
Eucgr.F04191 Eucalyptus grandis HOM05D003947 ORTHO05D004614 2.4e-06 56.2 148 31.8
Glyma.10G221900 Glycine max HOM05D003947 ORTHO05D004614 2.4e-06 56.2 149 30.2
Gorai.009G258400 Gossypium raimondii HOM05D003947 ORTHO05D004614 2.4e-06 56.2 148 31.1
RcHm_v2.0_Chr6g0274321 Rosa chinensis HOM05D003947 ORTHO05D004614 2.4e-06 56.2 144 30.6
Ca_10666_v3 Cicer arietinum L. HOM05D003947 ORTHO05D004614 3.2e-06 55.8 149 30.2
Gohir.A05G246100 Gossypium hirsutum HOM05D003947 ORTHO05D004614 4.2e-06 55.5 148 33.1
Potri.002G064900 Populus trichocarpa HOM05D003947 ORTHO05D004614 4.2e-06 55.5 148 33.1
arahy.Tifrunner.gnm1.ann1.8MR9WY Arachis hypogaea HOM05D003947 ORTHO05D004614 5.4e-06 55.1 147 32.0
THA.LOC104813088 Tarenaya hassleriana HOM05D003947 ORTHO05D004614 5.4e-06 55.1 141 33.3
HPP92_015638 Vanilla planifolia HOM05D007392 ORTHO05D009181 5.4e-06 55.1 140 36.4
GSVIVG01034579001 Vitis vinifera HOM05D003947 ORTHO05D004614 5.4e-06 55.1 147 29.9
CARHR045140 Cardamine hirsuta HOM05D007392 ORTHO05D009181 7.1e-06 54.7 66 47.0
FvH4_2g13060 Fragaria vesca HOM05D003947 ORTHO05D004614 7.1e-06 54.7 149 30.9
Nitab4.5_0002812g0010 Nicotiana tabacum HOM05D003947 ORTHO05D004614 7.1e-06 54.7 152 30.9
Sabra05G0149600 Salix brachista HOM05D003947 ORTHO05D004614 7.1e-06 54.7 148 31.8
HPP92_002802 Vanilla planifolia HOM05D003947 ORTHO05D004614 7.1e-06 54.7 142 28.9
FAN24G1125 Fragaria x ananassa HOM05D003947 ORTHO05D004614 9.2e-06 54.3 148 30.4
PSO700G0284 Papaver somniferum HOM05D003947 ORTHO05D004614 9.2e-06 54.3 142 28.9


User provided reference genes

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