Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT11G0965 Cannabis sativa HOM05D005992 ORTHO05D007476 9.7e-95 350.1 177 100.0
FvH4_5g18680 Fragaria vesca HOM05D005992 ORTHO05D007476 9.9e-47 190.7 174 59.2
FAN04G1498 Fragaria x ananassa HOM05D005992 ORTHO05D007476 1.3e-46 190.3 174 58.6
Prupe.8G267200 Prunus persica HOM05D005992 ORTHO05D007476 1.3e-46 190.3 176 62.5
FAN13G0560 Fragaria x ananassa HOM05D005992 ORTHO05D007476 3.8e-46 188.7 174 59.2
FAN18G0660 Fragaria x ananassa HOM05D005992 ORTHO05D007476 4.9e-46 188.3 174 58.6
CiPaw.13G059000 Carya illinoinensis HOM05D005992 ORTHO05D007476 1.1e-45 187.2 178 58.4
Cpa.g.sc8.7 Carica papaya HOM05D005992 ORTHO05D007476 1.4e-45 186.8 179 59.8
FAN08G0048 Fragaria x ananassa HOM05D005992 ORTHO05D007476 1.4e-45 186.8 174 58.0
Manes.13G058400 Manihot esculenta HOM05D005992 ORTHO05D007476 1.9e-45 186.4 179 57.5
RcHm_v2.0_Chr7g0176831 Rosa chinensis HOM05D005992 ORTHO05D007476 1.2e-44 183.7 174 59.2
MD03G1298800 Malus domestica HOM05D005992 ORTHO05D007476 1.0e-43 180.6 179 59.8
Potri.014G172600 Populus trichocarpa HOM05D005992 ORTHO05D007476 5.6e-42 174.9 184 56.0
QL09p044779 Quercus lobata HOM05D005992 ORTHO05D007476 7.3e-42 174.5 181 54.1
Psat5g001840 Pisum sativum HOM05D005992 ORTHO05D007476 6.2e-41 171.4 178 57.3
CSS0023701 Camellia sinensis var. sinensis HOM05D005992 ORTHO05D007476 8.1e-41 171.0 182 54.4
CSS0036227 Camellia sinensis var. sinensis HOM05D005992 ORTHO05D007476 8.1e-41 171.0 182 54.4
Thecc.01G203400 Theobroma cacao HOM05D005992 ORTHO05D007476 8.1e-41 171.0 180 57.8
Gohir.A11G146200 Gossypium hirsutum HOM05D005992 ORTHO05D007476 5.3e-40 168.3 172 56.4
Gorai.007G163000 Gossypium raimondii HOM05D005992 ORTHO05D007476 9.0e-40 167.5 172 56.4
Manes.12G055803 Manihot esculenta HOM05D005992 ORTHO05D007476 1.5e-39 166.8 174 53.4
Hma1.2p1_0161F.1_g071860 Hydrangea macrophylla HOM05D005992 ORTHO05D007476 2.6e-39 166.0 171 53.2
Gohir.D11G152400 Gossypium hirsutum HOM05D005992 ORTHO05D007476 5.8e-39 164.9 172 55.8
Dinv28773 Davidia involucrata HOM05D005992 ORTHO05D007476 7.6e-39 164.5 178 51.7
Duzib133G0028 Durio zibethinus HOM05D005992 ORTHO05D007476 2.4e-37 159.5 179 53.6
Duzib138G0279 Durio zibethinus HOM05D005992 ORTHO05D007476 2.4e-37 159.5 173 56.6
Hma1.2p1_0834F.1_g225730 Hydrangea macrophylla HOM05D005992 ORTHO05D007476 5.4e-37 158.3 172 51.7
COL.COLO4_19718 Corchorus olitorius HOM05D005992 ORTHO05D007476 7.1e-37 157.9 180 57.2
GSVIVG01004128001 Vitis vinifera HOM05D005992 ORTHO05D007476 9.3e-37 157.5 174 52.3
AUR62017763 Chenopodium quinoa HOM05D005992 ORTHO05D007476 3.5e-36 155.6 174 50.6
Medtr3g118100 Medicago truncatula HOM05D005992 ORTHO05D007476 7.9e-36 154.5 181 51.4
Lj1g0017920 Lotus japonicus HOM05D005992 ORTHO05D007476 1.0e-35 154.1 159 55.3
Atru.chr6.3466 Acer truncatum HOM05D005992 ORTHO05D007476 1.7e-35 153.3 177 50.3
Ca_15291_v3 Cicer arietinum L. HOM05D005992 ORTHO05D007476 1.7e-35 153.3 188 51.1
arahy.Tifrunner.gnm1.ann1.DJH8FA Arachis hypogaea HOM05D005992 ORTHO05D007476 3.9e-35 152.1 173 54.9
VMungo1309G0397 Vigna mungo HOM05D005992 ORTHO05D007476 5.1e-35 151.8 168 54.2
Phvul.009G118300 Phaseolus vulgaris HOM05D005992 ORTHO05D007476 1.9e-34 149.8 172 52.9
TWI36G1335 Tripterygium wilfordii HOM05D005992 ORTHO05D007476 4.3e-34 148.7 177 49.2
Ciclev10016954m.g Citrus clementina HOM05D005992 ORTHO05D007476 5.6e-34 148.3 179 49.7
Glyma.04G002700 Glycine max HOM05D005992 ORTHO05D007476 9.6e-34 147.5 178 53.4
Glyma.06G002700 Glycine max HOM05D005992 ORTHO05D007476 1.3e-33 147.1 172 53.5
TWI36G0694 Tripterygium wilfordii HOM05D005992 ORTHO05D007476 2.8e-33 146.0 177 48.6
Lalb_Chr11g0061201 Lupinus albus HOM05D005992 ORTHO05D007476 1.8e-32 143.3 146 57.5
Nn7g37421 Nelumbo nucifera HOM05D005992 ORTHO05D007476 1.8e-32 143.3 161 50.9
Ah.04g163410 Amaranthus hybridus HOM05D005992 ORTHO05D007476 2.4e-32 142.9 174 50.0
TWI75G1816 Tripterygium wilfordii HOM05D005992 ORTHO05D007476 5.3e-32 141.7 170 49.4
Eucgr.K02345 Eucalyptus grandis HOM05D005992 ORTHO05D007476 1.2e-31 140.6 173 50.3
HanXRQChr08g0230801 Helianthus annuus HOM05D005992 ORTHO05D007476 4.5e-31 138.7 174 48.3
Oeu058218.1 Olea europaea HOM05D005992 ORTHO05D007476 4.5e-31 138.7 170 48.2
Lsat_1_v5_gn_9_15721 Lactuca sativa HOM05D005992 ORTHO05D007476 5.8e-31 138.3 177 48.0
arahy.Tifrunner.gnm1.ann1.B4TR6Y Arachis hypogaea HOM05D005992 ORTHO05D007476 7.6e-31 137.9 166 52.4
Migut.D00757 Erythranthe guttata HOM05D005992 ORTHO05D007476 1.7e-30 136.7 171 49.7
ECA247G1400 Erigeron canadensis HOM05D005992 ORTHO05D007476 3.8e-30 135.6 177 46.9
Sabra14G0132200 Salix brachista HOM05D005992 ORTHO05D007476 8.4e-30 134.4 225 41.8
Nitab4.5_0009028g0010 Nicotiana tabacum HOM05D005992 ORTHO05D007476 1.4e-29 133.7 179 50.3
Lj1C108T9 Lonicera japonica HOM05D005992 ORTHO05D007476 3.2e-29 132.5 120 54.2
PGR044G1143 Punica granatum HOM05D005992 ORTHO05D007476 9.3e-29 131.0 168 47.0
Cc01_g15730 Coffea canephora HOM05D005992 ORTHO05D007476 1.6e-28 130.2 179 48.6
Nitab4.5_0001348g0200 Nicotiana tabacum HOM05D005992 ORTHO05D007476 6.0e-28 128.3 179 48.0
SalBow6G0883 Salvia bowleyana HOM05D005992 ORTHO05D007476 1.0e-27 127.5 186 46.8
TPR.G38510 Trifolium pratense HOM05D005992 ORTHO05D007476 1.0e-27 127.5 140 52.9
HPP92_004514 Vanilla planifolia HOM05D005992 ORTHO05D007476 1.3e-27 127.1 154 48.1
Rhsim01G0246100 Rhododendron simsii HOM05D005992 ORTHO05D007476 1.8e-27 126.7 129 55.0
AUR62032915 Chenopodium quinoa HOM05D005992 ORTHO05D007476 2.3e-27 126.3 138 49.3
Nitab4.5_0008751g0010 Nicotiana tabacum HOM05D005992 ORTHO05D007476 3.0e-27 125.9 179 47.5
EL10Ac9g23025 Beta vulgaris HOM05D005992 ORTHO05D007476 3.9e-27 125.6 143 50.3
Solyc06g082830.3 Solanum lycopersicum HOM05D005992 ORTHO05D007476 8.7e-27 124.4 178 46.1
Nitab4.5_0005967g0050 Nicotiana tabacum HOM05D005992 ORTHO05D007476 1.5e-26 123.6 179 48.0
Sc10g0006540 Simmondsia chinensis HOM05D005992 ORTHO05D007476 7.4e-26 121.3 173 43.9
Peaxi162Scf00390g00125 Petunia axillaris HOM05D005992 ORTHO05D007476 9.6e-26 120.9 179 45.3
PGSC0003DMG400027679 Solanum tuberosum HOM05D005992 ORTHO05D007476 9.6e-26 120.9 179 46.4
Sopen06g034190 Solanum pennellii HOM05D005992 ORTHO05D007476 2.8e-25 119.4 179 45.8
vmacro14669 Vaccinium macrocarpon HOM05D005992 ORTHO05D007476 4.8e-25 118.6 226 38.1
Os02g0609400 Oryza sativa ssp. japonica HOM05D005992 ORTHO05D007476 1.1e-24 117.5 150 43.3
MSTRG.18519 Avicennia marina HOM05D005992 ORTHO05D007476 1.8e-24 116.7 150 52.7
SalBow2G0316 Salvia bowleyana HOM05D005992 ORTHO05D007476 4.0e-24 115.5 216 39.8
CDE04G1688 Ceratophyllum demersum HOM05D005992 ORTHO05D007476 5.3e-24 115.2 159 44.0
SGA_v2.0_scaffold8G04484 Striga asiatica HOM05D005992 ORTHO05D007476 5.3e-24 115.2 172 47.7
MBI07_g44661_MAGBIO Magnolia biondii HOM05D005992 ORTHO05D007476 6.9e-24 114.8 138 47.8
THA.LOC104822452 Tarenaya hassleriana HOM05D005992 ORTHO05D007476 6.9e-24 114.8 154 42.9
CDE07G1966 Ceratophyllum demersum HOM05D005992 ORTHO05D007476 9.0e-24 114.4 157 43.9
Zm00001eb246760 Zea mays HOM05D005992 ORTHO05D007476 1.2e-23 114.0 135 45.2
CAN.G874.50 Capsicum annuum HOM05D005992 ORTHO05D007476 1.5e-23 113.6 175 42.9
PSO357G0365 Papaver somniferum HOM05D005992 ORTHO05D007476 2.0e-23 113.2 174 45.4
DCAR_018600 Daucus carota HOM05D005992 ORTHO05D007476 2.6e-23 112.8 214 38.8
PSO170G4201 Papaver somniferum HOM05D005992 ORTHO05D007476 2.6e-23 112.8 175 45.1
TWI18G0378 Tripterygium wilfordii HOM05D005992 ORTHO05D007476 4.5e-23 112.1 142 45.8
TAR362G0776 Trochodendron aralioides HOM05D005992 ORTHO05D007476 1.7e-22 110.2 104 55.8
THA.LOC104819021 Tarenaya hassleriana HOM05D005992 ORTHO05D007476 3.8e-22 109.0 153 41.2
unitig_60.g25570 Utricularia gibba HOM05D005992 ORTHO05D007476 1.2e-20 104.0 168 46.4
CiPaw.14G047400 Carya illinoinensis HOM05D005992 ORTHO05D007476 2.3e-19 99.8 133 48.1
Oeu064700.1 Olea europaea HOM05D005992 ORTHO05D007476 2.3e-19 99.8 110 46.4
Os02g0599500 Oryza sativa ssp. japonica HOM05D005992 ORTHO05D007476 8.7e-19 97.8 129 40.3
ATR0743G072 Amborella trichopoda HOM05D005992 ORTHO05D007476 5.7e-18 95.1 139 38.8
Hma1.2p1_1756F.1_g301045 Hydrangea macrophylla HOM05D005992 ORTHO05D007476 7.4e-18 94.7 107 51.4
Aqoxy2G04184 Aquilegia oxysepala HOM05D001906 ORTHO05D002083 3.4e-15 85.9 154 40.3
Actinidia23817 Actinidia chinensis HOM05D005992 ORTHO05D007476 1.3e-14 84.0 80 53.8
Sp3g06520 Schrenkiella parvula HOM05D005992 ORTHO05D007476 1.9e-13 80.1 148 36.5
Thhalv10021713m.g Eutrema salsugineum HOM05D005992 ORTHO05D007476 1.2e-12 77.4 148 38.5
BraA05t22792Z Brassica rapa HOM05D005992 ORTHO05D007476 1.3e-11 73.9 148 35.8
AL8G21060 Arabidopsis lyrata HOM05D005992 ORTHO05D007476 3.9e-11 72.4 140 36.4
Carub.0008s0791 Capsella rubella HOM05D005992 ORTHO05D007476 8.7e-11 71.2 135 37.8
AT5G48335 Arabidopsis thaliana HOM05D005992 ORTHO05D007476 1.5e-10 70.5 140 35.0
CARHR183920 Cardamine hirsuta HOM05D005992 ORTHO05D007476 1.5e-10 70.5 174 31.6
A05p40610 Brassica napus HOM05D005992 ORTHO05D007476 9.7e-10 67.8 148 33.1
Carub.0003s0715 Capsella rubella HOM05D005992 ORTHO05D007476 9.7e-10 67.8 93 41.9
Sopen09g012660 Solanum pennellii HOM05D005992 ORTHO05D007476 3.7e-09 65.9 77 45.5
PGSC0003DMG400020300 Solanum tuberosum HOM05D005992 ORTHO05D007476 3.7e-09 65.9 102 47.1
AL3G18940 Arabidopsis lyrata HOM05D005992 ORTHO05D007476 1.1e-08 64.3 155 29.7
C05p59720 Brassica napus HOM05D005992 ORTHO05D007476 1.4e-08 63.9 148 33.8
BolC5t34626H Brassica oleracea HOM05D005992 ORTHO05D007476 1.4e-08 63.9 148 33.8
CARHR082280 Cardamine hirsuta HOM05D005992 ORTHO05D007476 2.6e-07 59.7 152 29.6
Gohir.D11G007175 Gossypium hirsutum HOM05D005992 ORTHO05D007476 2.9e-06 56.2 51 58.8
CiPaw.10G142500 Carya illinoinensis HOM05D005992 ORTHO05D007476 3.8e-06 55.8 66 47.0
Gorai.009G395900 Gossypium raimondii HOM05D005992 ORTHO05D007476 3.8e-06 55.8 51 58.8


User provided reference genes

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