Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT11G0917 Cannabis sativa HOM05D004930 ORTHO05D006531 4.9e-217 757.7 429 100.0
CiPaw.06G148500 Carya illinoinensis HOM05D004930 ORTHO05D006531 1.4e-155 553.5 415 70.4
FvH4_5g29680 Fragaria vesca HOM05D004930 ORTHO05D006531 2.7e-154 549.3 345 78.0
Cfa005536 Carpinus fangiana HOM05D004930 ORTHO05D006531 3.5e-154 548.9 336 79.2
Lj6g0009653 Lotus japonicus HOM05D004930 ORTHO05D006531 4.5e-154 548.5 337 79.2
RcHm_v2.0_Chr7g0223001 Rosa chinensis HOM05D004930 ORTHO05D006531 5.9e-154 548.1 335 78.5
FAN13G1313 Fragaria x ananassa HOM05D004930 ORTHO05D006531 2.2e-153 546.2 343 77.6
arahy.Tifrunner.gnm1.ann1.PLNC5S Arachis hypogaea HOM05D004930 ORTHO05D006531 3.2e-152 542.3 337 78.0
TPR.G2103 Trifolium pratense HOM05D004930 ORTHO05D006531 9.4e-152 540.8 330 80.0
Ca_00086_v3 Cicer arietinum L. HOM05D004930 ORTHO05D006531 1.6e-151 540.0 333 79.6
FAN04G2298 Fragaria x ananassa HOM05D004930 ORTHO05D006531 2.7e-151 539.3 357 75.1
Phvul.006G213000 Phaseolus vulgaris HOM05D004930 ORTHO05D006531 2.7e-151 539.3 338 78.4
FAN18G2930 Fragaria x ananassa HOM05D004930 ORTHO05D006531 4.7e-151 538.5 354 75.7
VMungo0540G0757 Vigna mungo HOM05D004930 ORTHO05D006531 1.0e-150 537.3 338 79.3
arahy.Tifrunner.gnm1.ann1.3M9FW6 Arachis hypogaea HOM05D004930 ORTHO05D006531 1.8e-150 536.6 337 78.3
Glyma.15G047800 Glycine max HOM05D004930 ORTHO05D006531 5.2e-150 535.0 332 79.5
Psat1g224280 Pisum sativum HOM05D004930 ORTHO05D006531 5.2e-150 535.0 328 80.2
Glyma.08G184900 Glycine max HOM05D004930 ORTHO05D006531 2.0e-149 533.1 341 78.3
Medtr2g007650 Medicago truncatula HOM05D004930 ORTHO05D006531 2.0e-149 533.1 341 78.0
Potri.001G209500 Populus trichocarpa HOM05D004930 ORTHO05D006531 5.7e-149 531.6 428 65.0
PGR042G0956 Punica granatum HOM05D004930 ORTHO05D006531 7.5e-149 531.2 358 74.6
Potri.003G020800 Populus trichocarpa HOM05D004930 ORTHO05D006531 2.2e-148 529.6 339 75.8
Duzib248G0906 Durio zibethinus HOM05D004930 ORTHO05D006531 3.7e-148 528.9 347 74.9
MD15G1421100 Malus domestica HOM05D004930 ORTHO05D006531 4.8e-148 528.5 339 76.1
Lalb_Chr18g0060861 Lupinus albus HOM05D004930 ORTHO05D006531 1.4e-147 526.9 347 74.4
Gohir.D01G000700 Gossypium hirsutum HOM05D004930 ORTHO05D006531 3.1e-147 525.8 346 75.1
Gohir.A01G001000 Gossypium hirsutum HOM05D004930 ORTHO05D006531 4.1e-147 525.4 346 75.1
Gorai.002G001200 Gossypium raimondii HOM05D004930 ORTHO05D006531 5.4e-147 525.0 346 75.1
Atru.chr6.830 Acer truncatum HOM05D004930 ORTHO05D006531 9.1e-147 524.2 349 73.1
Cpa.g.sc2.5 Carica papaya HOM05D004930 ORTHO05D006531 2.0e-146 523.1 358 72.3
Duzib052G0674 Durio zibethinus HOM05D004930 ORTHO05D006531 2.7e-146 522.7 341 75.7
CSS0021494 Camellia sinensis var. sinensis HOM05D004930 ORTHO05D006531 3.5e-146 522.3 337 76.3
Thecc.02G040000 Theobroma cacao HOM05D004930 ORTHO05D006531 7.7e-146 521.2 346 76.0
TWI59G0754 Tripterygium wilfordii HOM05D004930 ORTHO05D006531 1.0e-145 520.8 349 75.1
CsaV3_3G018910 Cucumis sativus L. HOM05D004930 ORTHO05D006531 6.6e-145 518.1 330 76.1
TAR376G0678 Trochodendron aralioides HOM05D004930 ORTHO05D006531 1.1e-144 517.3 335 75.5
Solyc01g104310.3 Solanum lycopersicum HOM05D004930 ORTHO05D006531 2.5e-144 516.2 351 72.9
Ciclev10001315m.g Citrus clementina HOM05D004930 ORTHO05D006531 3.3e-144 515.8 419 66.1
COL.COLO4_17882 Corchorus olitorius HOM05D004930 ORTHO05D006531 4.2e-144 515.4 345 75.4
Sopen01g046750 Solanum pennellii HOM05D004930 ORTHO05D006531 4.2e-144 515.4 351 72.6
MELO3C019485.2 Cucumis melo HOM05D004930 ORTHO05D006531 5.5e-144 515.0 330 75.8
ClCG05G009760 Citrullus lanatus HOM05D004930 ORTHO05D006531 2.1e-143 513.1 325 76.0
PGSC0003DMG400023754 Solanum tuberosum HOM05D004930 ORTHO05D006531 2.8e-143 512.7 342 73.4
Cc02_g22360 Coffea canephora HOM05D004930 ORTHO05D006531 4.0e-142 508.8 351 73.2
SGA_v2.0_scaffold145G36067 Striga asiatica HOM05D004930 ORTHO05D006531 1.2e-141 507.3 331 74.9
QL02p098488 Quercus lobata HOM05D004930 ORTHO05D006531 5.7e-141 505.0 464 59.5
Rhsim05G0119100 Rhododendron simsii HOM05D004930 ORTHO05D006531 9.8e-141 504.2 337 72.7
GSVIVG01022999001 Vitis vinifera HOM05D004930 ORTHO05D006531 9.8e-141 504.2 325 77.2
TAR628G0980 Trochodendron aralioides HOM05D004930 ORTHO05D006531 2.2e-140 503.1 407 64.6
Eucgr.G00613 Eucalyptus grandis HOM05D004930 ORTHO05D006531 3.7e-140 502.3 347 72.0
SalBow6G0918 Salvia bowleyana HOM05D004930 ORTHO05D006531 3.7e-140 502.3 334 73.4
SalBow6G1869 Salvia bowleyana HOM05D004930 ORTHO05D006531 3.7e-140 502.3 334 73.4
Nitab4.5_0011195g0040 Nicotiana tabacum HOM05D004930 ORTHO05D006531 1.1e-139 500.7 353 71.1
Nn1g08650 Nelumbo nucifera HOM05D004930 ORTHO05D006531 2.4e-139 499.6 334 72.2
DCAR_001819 Daucus carota HOM05D004930 ORTHO05D006531 1.2e-138 497.3 339 71.4
ECA236G4599 Erigeron canadensis HOM05D004930 ORTHO05D006531 3.3e-136 489.2 355 69.0
EL10Ac6g15372 Beta vulgaris HOM05D004930 ORTHO05D006531 1.2e-135 487.3 328 73.2
Lsat_1_v5_gn_7_77761 Lactuca sativa HOM05D004930 ORTHO05D006531 3.6e-135 485.7 346 71.4
Actinidia39050 Actinidia chinensis HOM05D004930 ORTHO05D006531 1.0e-134 484.2 336 71.4
THA.LOC104810264 Tarenaya hassleriana HOM05D004930 ORTHO05D006531 1.8e-134 483.4 335 69.6
HanXRQChr11g0333531 Helianthus annuus HOM05D004930 ORTHO05D006531 8.9e-134 481.1 344 69.5
CAN.G1577.7 Capsicum annuum HOM05D004930 ORTHO05D006531 2.0e-133 479.9 293 78.2
Lalb_Chr20g0123411 Lupinus albus HOM05D004930 ORTHO05D006531 7.5e-133 478.0 334 70.7
Aqoxy5G02422 Aquilegia oxysepala HOM05D004930 ORTHO05D006531 2.2e-132 476.5 359 66.9
Gohir.D08G010200 Gossypium hirsutum HOM05D004930 ORTHO05D006531 2.2e-132 476.5 349 67.0
Gorai.004G003500 Gossypium raimondii HOM05D004930 ORTHO05D006531 8.3e-132 474.6 346 66.8
A08p08610 Brassica napus HOM05D004930 ORTHO05D006531 1.9e-131 473.4 334 68.3
BraA08t32874Z Brassica rapa HOM05D004930 ORTHO05D006531 1.9e-131 473.4 334 68.3
Gohir.A08G000149 Gossypium hirsutum HOM05D004930 ORTHO05D006531 2.4e-131 473.0 348 66.7
CDE05G0822 Ceratophyllum demersum HOM05D004930 ORTHO05D006531 1.2e-130 470.7 331 68.0
BcaB04g17919 Brassica carinata HOM05D004930 ORTHO05D006531 1.7e-129 466.8 332 67.2
BcaC07g37556 Brassica carinata HOM05D004930 ORTHO05D006531 2.3e-129 466.5 334 66.8
Sp1g28730 Schrenkiella parvula HOM05D004930 ORTHO05D006531 2.3e-129 466.5 330 68.2
Carub.0001s3147 Capsella rubella HOM05D004930 ORTHO05D006531 5.0e-129 465.3 331 67.4
CARHR032640 Cardamine hirsuta HOM05D004930 ORTHO05D006531 5.0e-129 465.3 325 68.6
Aa31LG6G7800 Aethionema arabicum HOM05D004930 ORTHO05D006531 1.5e-128 463.8 331 67.7
Sabra03G0012100 Salix brachista HOM05D004930 ORTHO05D006531 3.3e-128 462.6 462 53.7
AL1G47670 Arabidopsis lyrata HOM05D004930 ORTHO05D006531 4.3e-128 462.2 331 68.0
AT1G33270 Arabidopsis thaliana HOM05D004930 ORTHO05D006531 5.6e-128 461.8 331 68.3
Hund04330 Selenicereus undatus HOM05D004930 ORTHO05D006531 6.2e-127 458.4 323 69.0
Lj5A251T70 Lonicera japonica HOM05D004930 ORTHO05D006531 5.2e-126 455.3 348 67.0
PSO170G4712 Papaver somniferum HOM05D004930 ORTHO05D006531 2.6e-125 453.0 348 65.8
BraA09t38838Z Brassica rapa HOM05D004930 ORTHO05D006531 9.8e-125 451.1 332 67.5
A09p32980 Brassica napus HOM05D004930 ORTHO05D006531 1.3e-124 450.7 332 67.5
ATR0684G093 Amborella trichopoda HOM05D004930 ORTHO05D006531 2.2e-124 449.9 330 67.0
Sc07g0007240 Simmondsia chinensis HOM05D004930 ORTHO05D006531 2.2e-124 449.9 331 68.0
BcaC08g43878 Brassica carinata HOM05D004930 ORTHO05D006531 3.7e-124 449.1 328 67.4
BolC6t36417H Brassica oleracea HOM05D004930 ORTHO05D006531 3.7e-124 449.1 328 67.4
C06p12670 Brassica napus HOM05D004930 ORTHO05D006531 3.2e-123 446.0 328 66.5
SEGI_13232 Sequoiadendron giganteum HOM05D004930 ORTHO05D006531 9.2e-123 444.5 345 63.8
Os11g0546300 Oryza sativa ssp. japonica HOM05D004930 ORTHO05D006531 2.7e-122 443.0 339 63.1
BcaB07g32965 Brassica carinata HOM05D004930 ORTHO05D006531 1.3e-121 440.7 327 65.7
Sabra01G0161800 Salix brachista HOM05D004930 ORTHO05D006531 3.9e-121 439.1 477 54.3
Zm00001eb113740 Zea mays HOM05D004930 ORTHO05D006531 5.6e-120 435.3 335 63.9
Peaxi162Scf00011g00243 Petunia axillaris HOM05D004930 ORTHO05D006531 9.5e-120 434.5 337 64.1
Nitab4.5_0002245g0180 Nicotiana tabacum HOM05D004930 ORTHO05D006531 4.0e-118 429.1 337 65.9
Ah.03g147430 Amaranthus hybridus HOM05D004930 ORTHO05D006531 1.2e-117 427.6 328 64.6
MBI03_g28294_MAGBIO Magnolia biondii HOM05D004930 ORTHO05D006531 1.7e-116 423.7 320 66.2
vmacro01769 Vaccinium macrocarpon HOM05D004930 ORTHO05D006531 1.6e-114 417.2 339 64.0
Thhalv10007991m.g Eutrema salsugineum HOM05D004930 ORTHO05D006531 1.5e-112 410.6 287 70.7
BolC8t47898H Brassica oleracea HOM05D004930 ORTHO05D006531 2.8e-111 406.4 381 54.9
AUR62017811 Chenopodium quinoa HOM05D004930 ORTHO05D006531 1.1e-110 404.4 295 68.5
Oeu012747.1 Olea europaea HOM05D004930 ORTHO05D006531 1.3e-108 397.5 226 83.6
Dinv19356 Davidia involucrata HOM05D004930 ORTHO05D006531 8.4e-108 394.8 268 75.0
Ca_29925_v3 Cicer arietinum L. HOM05D004930 ORTHO05D006531 2.1e-106 390.2 215 85.1
THA.LOC104813074 Tarenaya hassleriana HOM05D004930 ORTHO05D006531 2.7e-106 389.8 287 66.9
SMO145G0200 Selaginella moellendorffii HOM05D004930 ORTHO05D006531 3.5e-106 389.4 272 65.8
Rhsim11G0130300 Rhododendron simsii HOM05D004930 ORTHO05D006531 4.6e-106 389.0 220 82.7
AagrBONN_evm.TU.Sc2ySwM_344.3941 Anthoceros agrestis HOM05D004930 ORTHO05D006531 2.8e-103 379.8 267 68.2
Prupe.1G566300 Prunus persica HOM05D004930 ORTHO05D006531 9.3e-99 364.8 225 81.3
vmacro19901 Vaccinium macrocarpon HOM05D004930 ORTHO05D006531 5.1e-97 359.0 553 40.9
Pp3c11_20720 Physcomitrium patens HOM05D004930 ORTHO05D006531 8.7e-97 358.2 278 65.1
Mapoly0101s0012 Marchantia polymorpha HOM05D004930 ORTHO05D006531 1.5e-96 357.5 258 65.5
HPP92_002187 Vanilla planifolia HOM05D004930 ORTHO05D006531 2.8e-95 353.2 269 68.4
Manes.07G014400 Manihot esculenta HOM05D004930 ORTHO05D006531 1.9e-91 340.5 231 75.8
Sed0026856 Sechium edule HOM05D004930 ORTHO05D006531 2.3e-89 333.6 222 77.0
HanXRQChr02g0058791 Helianthus annuus HOM05D004930 ORTHO05D006531 1.9e-88 330.5 202 75.7
AUR62003501 Chenopodium quinoa HOM05D004930 ORTHO05D006531 7.6e-85 318.5 216 71.3
AagrBONN_evm.TU.Sc2ySwM_344.3947 Anthoceros agrestis HOM05D000001 ORTHO05D000003 7.9e-82 308.5 273 55.3
SMO139G0053 Selaginella moellendorffii HOM05D004930 ORTHO05D006531 5.7e-80 302.4 214 65.0
CSS0024235 Camellia sinensis var. sinensis HOM05D004930 ORTHO05D006531 2.8e-79 300.1 329 53.5
Haze_01635 Corylus avellana HOM05D004930 ORTHO05D006531 2.1e-74 283.9 186 78.5
CBR_g22336 Chara braunii HOM05D004930 ORTHO05D006531 3.0e-73 280.0 226 61.1
Cre12.g530950 Chlamydomonas reinhardtii HOM05D004930 ORTHO05D006531 1.9e-43 181.0 257 39.7
Cre03.g195500 Chlamydomonas reinhardtii HOM05D004930 ORTHO05D006531 6.8e-41 172.6 246 37.4
MCO11G494 Micromonas commoda HOM05D004930 ORTHO05D006531 2.7e-29 134.0 286 33.6
AUR62003500 Chenopodium quinoa HOM05D004930 ORTHO05D006531 2.3e-28 131.0 122 58.2
PRCOL_00005484 Prasinoderma coloniale HOM05D007321 ORTHO05D009244 3.3e-27 127.1 176 43.2
FAN11G3733 Fragaria x ananassa HOM05D004930 ORTHO05D006531 1.8e-25 121.3 81 72.8
Migut.N01037 Erythranthe guttata HOM05D004930 ORTHO05D006531 5.2e-25 119.8 130 51.5
FvH4_3g12743 Fragaria vesca HOM05D004930 ORTHO05D006531 2.0e-24 117.9 119 59.7
FvH4_3g29702 Fragaria vesca HOM05D004930 ORTHO05D011275 2.0e-24 117.9 113 57.5
CARHR054090 Cardamine hirsuta HOM05D004930 ORTHO05D006531 9.8e-24 115.5 89 67.4
FAN12G1704 Fragaria x ananassa HOM05D004930 ORTHO05D006531 1.7e-23 114.8 81 70.4
FAN17G0369 Fragaria x ananassa HOM05D004930 ORTHO05D011275 4.9e-23 113.2 81 69.1
FAN06G5097 Fragaria x ananassa HOM05D004930 ORTHO05D006531 8.3e-23 112.5 77 74.0
FAN25G1134 Fragaria x ananassa HOM05D004930 ORTHO05D006531 8.3e-23 112.5 77 74.0
FvH4_4g16550 Fragaria vesca HOM05D004930 ORTHO05D011275 3.2e-22 110.5 124 50.8
FAN17G1951 Fragaria x ananassa HOM05D004930 ORTHO05D006531 1.2e-21 108.6 77 68.8
FAN01G0209 Fragaria x ananassa HOM05D004930 ORTHO05D006531 1.6e-21 108.2 77 68.8
FAN17G1425 Fragaria x ananassa HOM05D004930 ORTHO05D006531 2.3e-20 104.4 77 66.2
Ca_20167_v3 Cicer arietinum L. HOM05D004930 ORTHO05D000002 1.4e-14 85.1 73 61.6
MCO01G237 Micromonas commoda HOM05D004930 ORTHO05D006531 5.4e-14 83.2 166 32.5
Cre09.g400219 Chlamydomonas reinhardtii HOM05D004930 ORTHO05D006531 1.3e-12 78.6 166 33.1
PRCOL_00003693 Prasinoderma coloniale HOM05D004930 ORTHO05D006531 1.7e-12 78.2 170 35.9
CBR_g45217 Chara braunii HOM05D004930 ORTHO05D028745 4.0e-09 67.0 170 30.0
Atru.chr3.79 Acer truncatum HOM05D037071 ORTHO05D010002 1.9e-06 58.2 37 67.6


User provided reference genes

Program Settings