Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT11G0896 Cannabis sativa HOM05D003975 ORTHO05D009762 0.0e+00 1090.9 990 100.0
Cfa008191 Carpinus fangiana HOM05D003975 ORTHO05D009762 2.6e-120 437.6 837 69.5
Haze_13863 Corylus avellana HOM05D003975 ORTHO05D009762 3.2e-118 430.6 839 65.3
Thecc.03G157100 Theobroma cacao HOM05D003975 ORTHO05D009762 4.6e-109 400.2 837 64.6
Atru.chr1.696 Acer truncatum HOM05D003975 ORTHO05D009762 1.5e-104 385.2 800 61.9
Duzib205G1466 Durio zibethinus HOM05D003975 ORTHO05D009762 9.6e-99 365.9 988 66.1
Dinv28563 Davidia involucrata HOM05D003975 ORTHO05D009762 6.2e-98 363.2 835 63.2
TWI39G0436 Tripterygium wilfordii HOM05D003975 ORTHO05D009762 8.1e-98 362.8 839 65.2
CAN.G48.19 Capsicum annuum HOM05D003975 ORTHO05D009762 1.6e-90 338.6 829 58.6
MSTRG.8816 Avicennia marina HOM05D003975 ORTHO05D009762 2.6e-88 331.3 825 64.2
CiPaw.03G094900 Carya illinoinensis HOM05D003975 ORTHO05D009762 2.2e-87 328.2 828 64.6
Eucgr.D00222 Eucalyptus grandis HOM05D003975 ORTHO05D009762 1.1e-86 325.9 799 64.6
Manes.15G055100 Manihot esculenta HOM05D003975 ORTHO05D009762 1.2e-85 322.4 839 60.2
Lsat_1_v5_gn_8_8880 Lactuca sativa HOM05D003975 ORTHO05D009762 2.1e-85 321.6 831 62.0
SGA_v2.0_scaffold2G01188 Striga asiatica HOM05D003975 ORTHO05D009762 8.7e-84 316.2 818 63.0
Sed0001623 Sechium edule HOM05D003975 ORTHO05D009762 1.3e-82 312.4 825 63.5
Sabra15G0054000 Salix brachista HOM05D003975 ORTHO05D009762 3.7e-82 310.8 535 43.7
QL09p019427 Quercus lobata HOM05D003975 ORTHO05D009762 4.8e-82 310.5 828 55.3
Gorai.003G114200 Gossypium raimondii HOM05D003975 ORTHO05D009762 1.8e-81 308.5 838 63.4
Gohir.D03G107900 Gossypium hirsutum HOM05D003975 ORTHO05D009762 4.1e-81 307.4 838 63.4
Ciclev10004237m.g Citrus clementina HOM05D003975 ORTHO05D009762 3.4e-80 304.3 544 51.1
MELO3C006816.2 Cucumis melo HOM05D003975 ORTHO05D009762 4.5e-80 303.9 514 62.1
Potri.004G200900 Populus trichocarpa HOM05D003975 ORTHO05D009762 3.8e-79 300.8 493 44.4
Sabra04G0136000 Salix brachista HOM05D003975 ORTHO05D009762 3.2e-78 297.7 508 49.0
Rhsim09G0192100 Rhododendron simsii HOM05D000201 ORTHO05D000375 1.2e-77 295.8 821 61.1
ECA233G1567 Erigeron canadensis HOM05D003975 ORTHO05D009762 4.6e-77 293.9 775 53.2
Sabra15G0053100 Salix brachista HOM05D003975 ORTHO05D009762 6.7e-76 290.0 542 41.9
vmacro09901 Vaccinium macrocarpon HOM05D003975 ORTHO05D009762 6.7e-76 290.0 837 58.4
Sabra09G0126700 Salix brachista HOM05D003975 ORTHO05D009762 1.5e-75 288.9 520 43.7
Sabra15G0031500 Salix brachista HOM05D003975 ORTHO05D009762 1.6e-74 285.4 535 44.5
Cc00_g07030 Coffea canephora HOM05D003975 ORTHO05D009762 2.4e-73 281.6 839 58.9
COL.COLO4_14135 Corchorus olitorius HOM05D003975 ORTHO05D009762 9.1e-73 279.6 819 63.5
Sabra15G0052100 Salix brachista HOM05D003975 ORTHO05D009762 5.0e-71 273.9 527 47.2
Sabra15G0045800 Salix brachista HOM05D003975 ORTHO05D009762 8.5e-71 273.1 527 42.9
GSVIVG01018516001 Vitis vinifera HOM05D003975 ORTHO05D009762 8.5e-71 273.1 635 72.6
DCAR_029158 Daucus carota HOM05D003975 ORTHO05D009762 2.1e-69 268.5 815 59.1
Nitab4.5_0002816g0010 Nicotiana tabacum HOM05D003975 ORTHO05D009762 1.0e-68 266.2 830 60.8
HanXRQChr05g0142511 Helianthus annuus HOM05D003975 ORTHO05D009762 1.3e-66 259.2 797 50.8
Lj8C41T2 Lonicera japonica HOM05D003975 ORTHO05D009762 3.1e-65 254.6 835 57.5
Sp2g25540 Schrenkiella parvula HOM05D003975 ORTHO05D009762 9.1e-65 253.1 841 45.7
Thhalv10003595m.g Eutrema salsugineum HOM05D003975 ORTHO05D009762 4.5e-64 250.8 825 47.3
Carub.0008s2305 Capsella rubella HOM05D003975 ORTHO05D009762 1.0e-63 249.6 543 45.3
Nitab4.5_0009543g0010 Nicotiana tabacum HOM05D003975 ORTHO05D009762 1.0e-63 249.6 830 60.5
CARHR276150 Cardamine hirsuta HOM05D003975 ORTHO05D009762 1.3e-63 249.2 841 49.8
AT5G62370 Arabidopsis thaliana HOM05D003975 ORTHO05D009762 5.0e-63 247.3 544 43.6
QL05p001270 Quercus lobata HOM05D003975 ORTHO05D009762 3.6e-61 241.1 826 28.6
AL8G39200 Arabidopsis lyrata HOM05D003975 ORTHO05D009762 4.7e-61 240.7 533 38.3
Sabra15G0048500 Salix brachista HOM05D003975 ORTHO05D009762 1.4e-57 229.2 703 33.4
Migut.F00464 Erythranthe guttata HOM05D003975 ORTHO05D009762 4.1e-57 227.6 829 60.0
PGSC0003DMG402014825 Solanum tuberosum HOM05D003975 ORTHO05D009762 7.7e-56 223.4 829 56.5
Sopen03g023950 Solanum pennellii HOM05D003975 ORTHO05D009762 1.3e-55 222.6 823 57.4
BolC1t02243H Brassica oleracea HOM05D003975 ORTHO05D009762 1.7e-55 222.2 526 43.5
ClCG02G008790 Citrullus lanatus HOM05D003975 ORTHO05D008071 6.5e-55 220.3 472 60.0
Solyc03g093150.3 Solanum lycopersicum HOM05D003975 ORTHO05D009762 3.6e-53 214.5 823 56.9
Sabra15G0044600 Salix brachista HOM05D003975 ORTHO05D009762 6.1e-53 213.8 711 33.3
THA.LOC104821407 Tarenaya hassleriana HOM05D003975 ORTHO05D009762 6.1e-53 213.8 541 47.7
A01p18130 Brassica napus HOM05D003975 ORTHO05D009762 1.5e-51 209.1 524 42.4
BraA01t01768Z Brassica rapa HOM05D003975 ORTHO05D009762 1.5e-51 209.1 524 42.4
Gohir.A03G058201 Gossypium hirsutum HOM05D003975 ORTHO05D009762 1.3e-50 206.1 797 67.8
Atru.chr1.699 Acer truncatum HOM05D003975 ORTHO05D009762 7.0e-49 200.3 360 55.0
CSS0048267 Camellia sinensis var. sinensis HOM05D003975 ORTHO05D009762 1.6e-48 199.1 429 68.1
Sabra15G0060200 Salix brachista HOM05D003975 ORTHO05D009762 1.0e-47 196.4 738 31.0
Sabra15G0046400 Salix brachista HOM05D003975 ORTHO05D009762 6.5e-47 193.7 274 40.5
TAR375G0346 Trochodendron aralioides HOM05D003975 ORTHO05D009762 1.2e-45 189.5 527 53.5
Peaxi162Scf00241g00015 Petunia axillaris HOM05D003975 ORTHO05D009762 4.4e-43 181.0 824 57.4
C01p23090 Brassica napus HOM05D003975 ORTHO05D009762 2.4e-41 175.3 526 40.5
Nitab4.5_0002149g0030 Nicotiana tabacum HOM05D003975 ORTHO05D009762 3.1e-41 174.9 536 27.4
CsaV3_3G016180 Cucumis sativus L. HOM05D003975 ORTHO05D009762 2.1e-37 162.2 389 63.5
BcaNung03570 Brassica carinata HOM05D003975 ORTHO05D009762 5.2e-36 157.5 263 36.5
PGR142G2422 Punica granatum HOM05D003975 ORTHO05D009762 4.9e-34 151.0 829 55.2
Aa31LG11G1250 Aethionema arabicum HOM05D003975 ORTHO05D009762 1.7e-31 142.5 529 38.9
Aqoxy6G00092 Aquilegia oxysepala HOM05D003975 ORTHO05D009762 2.3e-31 142.1 175 44.0
CSS0004960 Camellia sinensis var. sinensis HOM05D003975 ORTHO05D009762 1.2e-29 136.3 114 58.8
MBI04_g11438_MAGBIO Magnolia biondii HOM05D003975 ORTHO05D009762 1.2e-21 109.8 163 37.4
BcaNung03569 Brassica carinata HOM05D003975 ORTHO05D009762 1.4e-20 106.3 436 59.2
Nn1g01091 Nelumbo nucifera HOM05D003975 ORTHO05D009762 4.9e-18 97.8 510 46.3
Nitab4.5_0002556g0070 Nicotiana tabacum HOM05D003975 ORTHO05D009762 1.4e-17 96.3 92 48.9
Oeu023215.2 Olea europaea HOM05D003975 ORTHO05D009762 1.4e-17 96.3 116 44.0
ATR0743G137 Amborella trichopoda HOM05D003975 ORTHO05D009762 9.2e-17 93.6 161 34.8
ATR0743G010 Amborella trichopoda HOM05D003975 ORTHO05D009762 1.2e-16 93.2 161 34.2
HPP92_003270 Vanilla planifolia HOM05D003975 ORTHO05D009762 1.6e-16 92.8 262 27.5
BcaC04g23418 Brassica carinata HOM05D003975 ORTHO05D009762 2.2e-10 72.4 109 34.9
C09p08550 Brassica napus HOM05D003975 ORTHO05D009762 2.2e-10 72.4 109 34.9
BolC9t53764H Brassica oleracea HOM05D003975 ORTHO05D009762 2.2e-10 72.4 109 34.9
Dinv32060 Davidia involucrata HOM05D005973 ORTHO05D007285 2.7e-08 65.5 221 25.8
Os10g0116000 Oryza sativa ssp. japonica HOM05D003975 ORTHO05D009762 3.5e-08 65.1 146 28.1
Nitab4.5_0005512g0030 Nicotiana tabacum HOM05D000508 ORTHO05D000371 1.7e-07 62.8 35 68.6
Atru.BG.182.p Acer truncatum HOM05D004783 ORTHO05D005581 5.1e-07 61.2 190 23.7
Actinidia08309 Actinidia chinensis HOM05D000598 ORTHO05D009762 6.6e-07 60.8 57 54.4
Aa31LG9G8720 Aethionema arabicum HOM05D005973 ORTHO05D007285 6.6e-07 60.8 169 27.8
Cc07_g18990 Coffea canephora HOM05D000162 ORTHO05D000090 8.6e-07 60.5 165 29.7
Os07g0179000 Oryza sativa ssp. japonica HOM05D005973 ORTHO05D007285 8.6e-07 60.5 197 27.4
AL7G34260 Arabidopsis lyrata HOM05D003210 ORTHO05D000001 5.6e-06 57.8 245 27.3
HPP92_021332 Vanilla planifolia HOM05D007212 ORTHO05D000003 5.6e-06 57.8 159 27.7
CSS0026764 Camellia sinensis var. sinensis HOM05D003975 ORTHO05D009762 7.3e-06 57.4 68 36.8
CAN.G508.18 Capsicum annuum HOM05D000002 ORTHO05D000001 9.5e-06 57.0 45 62.2
DCAR_020027 Daucus carota HOM05D016234 ORTHO05D016483 9.5e-06 57.0 229 23.6


User provided reference genes

Program Settings