Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT11G0894 Cannabis sativa HOM05D004640 ORTHO05D005489 0.0e+00 1242.6 660 100.0
CiPaw.05G048700 Carya illinoinensis HOM05D004640 ORTHO05D005489 8.8e-266 920.2 671 75.6
Manes.10G125900 Manihot esculenta HOM05D004640 ORTHO05D005489 4.4e-265 917.9 673 76.2
Atru.chr6.619 Acer truncatum HOM05D004640 ORTHO05D005489 9.1e-263 910.2 668 74.6
Atru.chr6.621_Atru.chr6.622 Acer truncatum HOM05D004640 ORTHO05D005489 9.1e-263 910.2 668 74.6
QL02p099200 Quercus lobata HOM05D004640 ORTHO05D005489 2.2e-261 905.6 673 75.2
Thecc.02G088200 Theobroma cacao HOM05D004640 ORTHO05D005489 5.0e-261 904.4 676 75.0
Duzib132G0532 Durio zibethinus HOM05D004640 ORTHO05D005489 4.2e-260 901.4 675 72.6
TWI14G1252 Tripterygium wilfordii HOM05D004640 ORTHO05D005489 6.8e-258 894.0 667 74.2
Glyma.08G187100 Glycine max HOM05D004640 ORTHO05D005489 1.5e-257 892.9 675 75.1
Gohir.A04G121200 Gossypium hirsutum HOM05D004640 ORTHO05D005489 2.6e-257 892.1 676 73.4
Glyma.15G045900 Glycine max HOM05D004640 ORTHO05D005489 4.4e-257 891.3 677 74.3
TPR.G2079 Trifolium pratense HOM05D004640 ORTHO05D005489 3.7e-256 888.3 672 74.4
RcHm_v2.0_Chr1g0332251 Rosa chinensis HOM05D004640 ORTHO05D005489 1.3e-253 879.8 659 74.5
Eucgr.I02737 Eucalyptus grandis HOM05D004640 ORTHO05D005489 5.5e-252 874.4 674 72.6
Gorai.012G151900 Gossypium raimondii HOM05D004640 ORTHO05D005489 1.2e-251 873.2 703 67.9
Potri.001G211700 Populus trichocarpa HOM05D004640 ORTHO05D005489 2.7e-251 872.1 698 71.6
TWI59G0201 Tripterygium wilfordii HOM05D004640 ORTHO05D005489 2.7e-251 872.1 637 75.7
VMungo0540G1095 Vigna mungo HOM05D004640 ORTHO05D005489 2.7e-251 872.1 671 72.9
Medtr2g006880 Medicago truncatula HOM05D004640 ORTHO05D005489 4.0e-250 868.2 671 72.0
Hma1.2p1_0296F.1_g116830 Hydrangea macrophylla HOM05D004640 ORTHO05D005489 5.2e-250 867.8 678 72.7
Ciclev10000505m.g Citrus clementina HOM05D004640 ORTHO05D005489 7.5e-249 864.0 675 71.6
Prupe.1G004500 Prunus persica HOM05D004640 ORTHO05D005489 1.7e-248 862.8 667 74.5
COL.COLO4_11782 Corchorus olitorius HOM05D004640 ORTHO05D005489 2.2e-248 862.4 633 75.7
FvH4_5g29191 Fragaria vesca HOM05D004640 ORTHO05D005489 2.2e-248 862.4 666 73.7
FAN08G0534 Fragaria x ananassa HOM05D004640 ORTHO05D005489 1.1e-247 860.1 661 73.5
Gorai.002G006000 Gossypium raimondii HOM05D004640 ORTHO05D005489 1.2e-246 856.7 685 71.1
PGR142G2697 Punica granatum HOM05D004640 ORTHO05D005489 4.5e-246 854.7 668 71.4
Sabra01G0163500 Salix brachista HOM05D004640 ORTHO05D005489 5.9e-246 854.4 670 72.8
CSS0031954 Camellia sinensis var. sinensis HOM05D004640 ORTHO05D005489 5.0e-245 851.3 677 72.5
CSS0010715 Camellia sinensis var. sinensis HOM05D004640 ORTHO05D005489 2.5e-244 849.0 677 72.5
Actinidia19942 Actinidia chinensis HOM05D004640 ORTHO05D005489 1.0e-242 843.6 671 72.6
CsaV3_3G019120 Cucumis sativus L. HOM05D004640 ORTHO05D005489 1.7e-240 836.3 680 70.7
Lj6g0021650 Lotus japonicus HOM05D004640 ORTHO05D005489 1.1e-239 833.6 671 70.8
Gohir.D01G005100 Gossypium hirsutum HOM05D004640 ORTHO05D005489 3.2e-239 832.0 677 69.7
MD15G1426300 Malus domestica HOM05D004640 ORTHO05D005489 3.2e-239 832.0 668 72.9
arahy.Tifrunner.gnm1.ann1.Y1PSG0 Arachis hypogaea HOM05D004640 ORTHO05D005489 7.0e-239 830.9 731 67.3
MD08G1235100 Malus domestica HOM05D004640 ORTHO05D005489 2.7e-238 828.9 668 72.8
Dinv24776 Davidia involucrata HOM05D004640 ORTHO05D005489 3.3e-236 822.0 619 75.6
Rhsim05G0203300 Rhododendron simsii HOM05D004640 ORTHO05D005489 5.2e-234 814.7 659 72.2
Cc09_g07620 Coffea canephora HOM05D004640 ORTHO05D005489 2.2e-232 809.3 674 69.0
MELO3C019462.2 Cucumis melo HOM05D004640 ORTHO05D005489 1.1e-231 807.0 660 70.0
arahy.Tifrunner.gnm1.ann1.8G9BB5 Arachis hypogaea HOM05D004640 ORTHO05D005489 7.0e-231 804.3 674 69.0
Phvul.006G215300 Phaseolus vulgaris HOM05D004640 ORTHO05D005489 9.2e-231 803.9 614 73.8
TWI23G1121 Tripterygium wilfordii HOM05D004640 ORTHO05D005489 1.2e-230 803.5 643 70.6
Hund21765 Selenicereus undatus HOM05D004640 ORTHO05D005489 2.0e-230 802.7 670 68.8
MSTRG.23232 Avicennia marina HOM05D004640 ORTHO05D005489 1.0e-229 800.4 672 68.5
Lsat_1_v5_gn_5_71601 Lactuca sativa HOM05D004640 ORTHO05D005489 5.6e-228 794.7 673 67.5
Ca_00068_v3 Cicer arietinum L. HOM05D004640 ORTHO05D005489 1.8e-226 789.6 675 65.2
Gohir.A01G005001 Gossypium hirsutum HOM05D004640 ORTHO05D005489 1.8e-226 789.6 639 70.1
vmacro12737 Vaccinium macrocarpon HOM05D004640 ORTHO05D005489 4.0e-226 788.5 791 62.1
AUR62006957 Chenopodium quinoa HOM05D004640 ORTHO05D005489 9.8e-225 783.9 678 66.8
Sc09g0001940 Simmondsia chinensis HOM05D004640 ORTHO05D005489 1.9e-223 779.6 678 67.3
Lalb_Chr20g0123511 Lupinus albus HOM05D004640 ORTHO05D005489 2.1e-222 776.2 611 73.2
Migut.H02548 Erythranthe guttata HOM05D004640 ORTHO05D005489 2.3e-221 772.7 675 68.0
FAN13G0955 Fragaria x ananassa HOM05D004640 ORTHO05D005489 3.9e-221 771.9 602 73.4
EL10Ac4g09724 Beta vulgaris HOM05D004640 ORTHO05D005489 1.5e-220 770.0 682 66.1
Sed0025782 Sechium edule HOM05D004640 ORTHO05D005489 1.2e-219 766.9 563 75.8
GSVIVG01022882001 Vitis vinifera HOM05D004640 ORTHO05D005489 1.2e-217 760.4 552 76.4
Psat1g221200 Pisum sativum HOM05D004640 ORTHO05D005489 2.6e-217 759.2 616 70.5
Carub.0002s0421 Capsella rubella HOM05D004640 ORTHO05D005489 5.4e-215 751.5 661 66.4
Thhalv10023347m.g Eutrema salsugineum HOM05D004640 ORTHO05D005489 9.2e-215 750.7 663 66.1
AUR62000605 Chenopodium quinoa HOM05D004640 ORTHO05D005489 2.7e-214 749.2 674 65.0
Aqoxy1G01535 Aquilegia oxysepala HOM05D004640 ORTHO05D005489 1.2e-211 740.3 668 63.8
AL2G15460 Arabidopsis lyrata HOM05D004640 ORTHO05D005489 2.1e-211 739.6 660 65.8
ECA233G0813 Erigeron canadensis HOM05D004640 ORTHO05D005489 4.7e-211 738.4 641 67.1
Solyc04g026280.2 Solanum lycopersicum HOM05D004640 ORTHO05D005489 8.1e-211 737.6 639 67.0
Sopen04g014430 Solanum pennellii HOM05D004640 ORTHO05D005489 8.1e-211 737.6 654 65.7
BcaB04g20302 Brassica carinata HOM05D004640 ORTHO05D005489 1.5e-209 733.4 655 65.5
A01p29810 Brassica napus HOM05D004640 ORTHO05D005489 5.8e-209 731.5 654 65.0
BraA01t03109Z Brassica rapa HOM05D004640 ORTHO05D005489 5.8e-209 731.5 654 65.0
THA.LOC104809619 Tarenaya hassleriana HOM05D004640 ORTHO05D005489 5.8e-209 731.5 650 66.5
Sp2g03520 Schrenkiella parvula HOM05D004640 ORTHO05D005489 7.6e-209 731.1 651 65.6
PSO675G0104 Papaver somniferum HOM05D004640 ORTHO05D005489 3.8e-208 728.8 682 63.8
BcaC02g10600 Brassica carinata HOM05D004640 ORTHO05D005489 1.9e-207 726.5 653 64.9
C04p25650 Brassica napus HOM05D004640 ORTHO05D005489 1.9e-207 726.5 653 64.9
PSO541G2962 Papaver somniferum HOM05D004640 ORTHO05D005489 1.9e-207 726.5 679 64.1
C05p50900 Brassica napus HOM05D004640 ORTHO05D005489 5.4e-207 724.9 653 64.8
AT1G60995 Arabidopsis thaliana HOM05D004640 ORTHO05D005489 9.3e-207 724.2 657 64.4
BcaC06g31828 Brassica carinata HOM05D004640 ORTHO05D005489 2.7e-206 722.6 653 64.3
ClCG05G009610 Citrullus lanatus HOM05D004640 ORTHO05D005489 6.0e-206 721.5 680 60.9
C01p37670 Brassica napus HOM05D004640 ORTHO05D005489 1.0e-205 720.7 657 63.6
BolC1t03731H Brassica oleracea HOM05D004640 ORTHO05D005489 1.0e-205 720.7 657 63.6
Nitab4.5_0001785g0050 Nicotiana tabacum HOM05D004640 ORTHO05D005489 1.2e-201 707.2 738 57.0
HanXRQChr15g0469061 Helianthus annuus HOM05D004640 ORTHO05D005489 2.3e-197 693.0 642 64.3
Nn7g37934 Nelumbo nucifera HOM05D004640 ORTHO05D005489 8.4e-192 674.5 525 72.8
FAN04G1948 Fragaria x ananassa HOM05D004640 ORTHO05D005489 1.9e-191 673.3 602 63.0
SGA_v2.0_scaffold51G18853 Striga asiatica HOM05D004640 ORTHO05D005489 7.9e-190 667.9 699 60.4
Aa31LG2G9580 Aethionema arabicum HOM05D004640 ORTHO05D005489 3.0e-189 666.0 624 63.9
Actinidia36578 Actinidia chinensis HOM05D004640 ORTHO05D005489 6.7e-189 664.8 544 71.5
Duzib052G0332 Durio zibethinus HOM05D004640 ORTHO05D005489 1.1e-186 657.5 694 59.5
FAN18G0226 Fragaria x ananassa HOM05D004640 ORTHO05D005489 2.3e-181 639.8 610 60.5
Lj4C822G11 Lonicera japonica HOM05D004640 ORTHO05D005489 6.7e-181 638.3 496 72.2
Peaxi162Scf00577g00411 Petunia axillaris HOM05D004640 ORTHO05D005489 9.7e-180 634.4 676 55.9
Oeu032223.3 Olea europaea HOM05D000396 ORTHO05D000116 1.1e-178 630.9 453 76.8
BcaC09g49343 Brassica carinata HOM05D004640 ORTHO05D005489 1.2e-177 627.5 593 62.7
Os03g0659900 Oryza sativa ssp. japonica HOM05D004640 ORTHO05D005489 6.5e-176 621.7 677 57.3
DCAR_021303 Daucus carota HOM05D004640 ORTHO05D005489 2.1e-174 616.7 674 54.0
unitig_0.g396 Utricularia gibba HOM05D004640 ORTHO05D005489 9.1e-170 601.3 656 57.5
BolC4t24244H Brassica oleracea HOM05D004640 ORTHO05D005489 2.3e-165 586.6 460 67.4
MBI01_g44452_MAGBIO Magnolia biondii HOM05D004640 ORTHO05D005489 2.0e-164 583.6 670 53.1
HPP92_017742 Vanilla planifolia HOM05D004640 ORTHO05D005489 3.8e-160 569.3 667 54.9
TAR381G0517 Trochodendron aralioides HOM05D004640 ORTHO05D005489 1.4e-159 567.4 715 50.8
Gohir.D04G163900 Gossypium hirsutum HOM05D004640 ORTHO05D005489 5.2e-157 558.9 413 76.0
Oeu046366.1 Olea europaea HOM05D004640 ORTHO05D005489 5.2e-157 558.9 650 55.2
ATR0763G087 Amborella trichopoda HOM05D004640 ORTHO05D005489 1.9e-151 540.4 652 52.9
Nitab4.5_0004809g0070 Nicotiana tabacum HOM05D004640 ORTHO05D005489 4.5e-137 492.7 615 49.6
Zm00001eb218090 Zea mays HOM05D004640 ORTHO05D005489 1.6e-134 484.2 438 66.7
Hund07189 Selenicereus undatus HOM05D004640 ORTHO05D005489 1.0e-128 464.9 671 46.8
Pp3c3_37820 Physcomitrium patens HOM05D004640 ORTHO05D005489 2.5e-127 460.3 559 49.4
Mapoly0014s0041 Marchantia polymorpha HOM05D004640 ORTHO05D005489 5.2e-125 452.6 638 46.9
Ah.06g188240 Amaranthus hybridus HOM05D004640 ORTHO05D005489 1.8e-117 427.6 504 54.4
AagrBONN_evm.TU.Sc2ySwM_344.1404 Anthoceros agrestis HOM05D004640 ORTHO05D005489 2.6e-108 397.1 559 45.8
SMO116G0341 Selaginella moellendorffii HOM05D004640 ORTHO05D005489 1.7e-107 394.4 677 42.2
CAN.G124.21 Capsicum annuum HOM05D004640 ORTHO05D005489 2.5e-103 380.6 309 76.7
Haze_01729 Corylus avellana HOM05D004640 ORTHO05D005489 2.2e-99 367.5 283 79.9
CBR_g54224 Chara braunii HOM05D004640 ORTHO05D005489 4.1e-98 363.2 575 44.7
BraSC39t46176Z Brassica rapa HOM05D004640 ORTHO05D005489 1.7e-75 288.1 299 61.5
CDE12G0675 Ceratophyllum demersum HOM05D004640 ORTHO05D005489 1.0e-72 278.9 291 56.0
TAR625G1136 Trochodendron aralioides HOM05D004640 ORTHO05D005489 1.1e-69 268.9 182 86.3
BNapus_Darmor_BZH_scaffold_271p00030 Brassica napus HOM05D004640 ORTHO05D005489 3.8e-59 233.8 315 44.1
Gohir.D04G163933 Gossypium hirsutum HOM05D004640 ORTHO05D005489 1.6e-57 228.4 200 61.5
Manes.07G017650 Manihot esculenta HOM05D004640 ORTHO05D005489 1.6e-57 228.4 165 87.3
CDE12G0207 Ceratophyllum demersum HOM05D004640 ORTHO05D005489 3.3e-55 220.7 333 42.0
EL10Ac4g09783 Beta vulgaris HOM05D004640 ORTHO05D005489 2.0e-52 211.5 226 65.0
CDE12G0722 Ceratophyllum demersum HOM05D004640 ORTHO05D005489 2.0e-52 211.5 281 51.2
CDE12G0158 Ceratophyllum demersum HOM05D004640 ORTHO05D005489 1.2e-49 202.2 192 74.5
EL10Ac4g09779 Beta vulgaris HOM05D004640 ORTHO05D005489 3.0e-48 197.6 275 50.5
CDE12G0153 Ceratophyllum demersum HOM05D004640 ORTHO05D005489 1.7e-46 191.8 297 40.7
BNapus_Darmor_BZH_scaffold_271p00020 Brassica napus HOM05D004640 ORTHO05D005489 1.0e-43 182.6 141 71.6
Haze_01724 Corylus avellana HOM05D004640 ORTHO05D005489 8.5e-43 179.5 166 57.8
RcHm_v2.0_Chr7g0230911 Rosa chinensis HOM05D004640 ORTHO05D005489 1.4e-42 178.7 103 93.2
MBI01_g00654_MAGBIO Magnolia biondii HOM05D004640 ORTHO05D005489 1.3e-35 155.6 228 40.8
Haze_01727 Corylus avellana HOM05D004640 ORTHO05D005489 8.0e-33 146.4 81 84.0
arahy.Tifrunner.gnm1.ann1.2GJ950 Arachis hypogaea HOM05D004640 ORTHO05D005489 1.2e-23 115.9 89 76.4
HPP92_017709 Vanilla planifolia HOM05D004640 ORTHO05D005489 7.5e-23 113.2 249 36.9
PRCOL_00005332 Prasinoderma coloniale HOM05D004640 ORTHO05D005489 2.0e-20 105.1 309 28.5
Haze_01804 Corylus avellana HOM05D004640 ORTHO05D005489 1.3e-19 102.4 59 79.7
TAR625G0012 Trochodendron aralioides HOM05D004640 ORTHO05D005489 2.3e-16 91.7 111 51.4
A03p68870 Brassica napus HOM05D004640 ORTHO05D005489 2.0e-15 88.6 90 48.9
BraSC39t46178Z Brassica rapa HOM05D004640 ORTHO05D005489 2.0e-15 88.6 90 48.9
SalBow8G0731 Salvia bowleyana HOM05D004640 ORTHO05D005489 4.4e-15 87.4 51 82.4
TAR625G0944 Trochodendron aralioides HOM05D004640 ORTHO05D005489 1.8e-13 82.0 123 39.8
arahy.Tifrunner.gnm1.ann1.5KT91U Arachis hypogaea HOM05D004640 ORTHO05D005489 9.2e-13 79.7 63 65.1
Zm00001eb114350 Zea mays HOM05D004640 ORTHO05D005489 2.0e-12 78.6 53 66.0
arahy.Tifrunner.gnm1.ann1.VBF1S6 Arachis hypogaea HOM05D002443 ORTHO05D002674 8.6e-11 73.2 107 51.4
SHI16685 Sapria himalayana HOM05D004640 ORTHO05D005489 2.5e-10 71.6 171 31.6
Haze_01802 Corylus avellana HOM05D004640 ORTHO05D005489 2.1e-09 68.6 73 53.4
Hma1.2p1_0340F.1_g130025 Hydrangea macrophylla HOM05D004640 ORTHO05D005489 1.8e-08 65.5 62 54.8
Hma1.2p1_2041F.1_g312210 Hydrangea macrophylla HOM05D004640 ORTHO05D005489 1.8e-08 65.5 62 54.8
arahy.Tifrunner.gnm1.ann1.FS0M29 Arachis hypogaea HOM05D001673 ORTHO05D012548 1.5e-07 62.4 136 33.8
RcHm_v2.0_Chr7g0219231 Rosa chinensis HOM05D003652 ORTHO05D005489 5.8e-07 60.5 36 86.1
Lsat_1_v5_gn_5_81581 Lactuca sativa HOM05D004640 ORTHO05D005489 1.3e-06 59.3 119 31.1
RcHm_v2.0_Chr6g0266101 Rosa chinensis HOM05D004640 ORTHO05D005489 1.3e-06 59.3 32 90.6
A03p68880 Brassica napus HOM05D004640 ORTHO05D005489 1.7e-06 58.9 76 47.4
SEGI_36483 Sequoiadendron giganteum HOM05D004640 ORTHO05D005489 4.9e-06 57.4 58 53.4
SHI16674 Sapria himalayana HOM05D004640 ORTHO05D005489 6.4e-06 57.0 35 68.6


User provided reference genes

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