Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT11G0889 Cannabis sativa HOM05D000187 ORTHO05D000230 1.6e-110 402.9 230 100.0
Prupe.5G225100 Prunus persica HOM05D000187 ORTHO05D000230 2.3e-35 153.3 122 69.7
Glyma.08G049400 Glycine max HOM05D000187 ORTHO05D000230 3.9e-35 152.5 125 68.8
Glyma.05G241900 Glycine max HOM05D000187 ORTHO05D000230 2.1e-33 146.7 129 68.2
VMungo0251G2579 Vigna mungo HOM05D000187 ORTHO05D000230 8.9e-32 141.4 127 64.6
Phvul.002G325200 Phaseolus vulgaris HOM05D000187 ORTHO05D000230 7.6e-31 138.3 127 63.0
MELO3C002110.2 Cucumis melo HOM05D000187 ORTHO05D000230 6.4e-30 135.2 126 62.7
RcHm_v2.0_Chr7g0179401 Rosa chinensis HOM05D000187 ORTHO05D000230 6.4e-30 135.2 123 66.7
CsaV3_1G006940 Cucumis sativus L. HOM05D000187 ORTHO05D000230 1.1e-29 134.4 126 62.7
QL10p026760 Quercus lobata HOM05D000187 ORTHO05D000230 5.4e-29 132.1 122 66.4
MD06G1220700 Malus domestica HOM05D000187 ORTHO05D000230 3.5e-28 129.4 120 61.7
CSS0000068 Camellia sinensis var. sinensis HOM05D000187 ORTHO05D000230 1.5e-26 124.0 122 59.8
Sed0018606 Sechium edule HOM05D000187 ORTHO05D000230 2.5e-26 123.2 113 62.8
ClCG04G010890 Citrullus lanatus HOM05D000187 ORTHO05D000230 5.6e-26 122.1 124 56.5
Cpa.g.sc3.461 Carica papaya HOM05D000187 ORTHO05D000230 9.6e-26 121.3 127 58.3
MD14G1230200 Malus domestica HOM05D000187 ORTHO05D000230 1.6e-25 120.6 121 62.0
CiPaw.16G089300 Carya illinoinensis HOM05D000187 ORTHO05D000230 2.1e-25 120.2 123 60.2
FAN04G1576 Fragaria x ananassa HOM05D000187 ORTHO05D000230 8.1e-25 118.2 124 64.5
Thecc.03G042900 Theobroma cacao HOM05D000187 ORTHO05D000230 1.1e-24 117.9 133 56.4
Lj4g0024779 Lotus japonicus HOM05D000187 ORTHO05D000230 1.4e-24 117.5 130 57.7
CSS0006855 Camellia sinensis var. sinensis HOM05D000187 ORTHO05D000230 2.4e-24 116.7 122 56.6
Duzib205G0431 Durio zibethinus HOM05D000187 ORTHO05D000230 9.0e-24 114.8 130 55.4
Cfa019728 Carpinus fangiana HOM05D000187 ORTHO05D000230 1.5e-23 114.0 121 61.2
arahy.Tifrunner.gnm1.ann1.P10SDX Arachis hypogaea HOM05D000187 ORTHO05D000230 7.6e-23 111.7 119 54.6
Dinv17509 Davidia involucrata HOM05D000187 ORTHO05D000230 9.9e-23 111.3 120 56.7
FAN08G2200 Fragaria x ananassa HOM05D000187 ORTHO05D000230 9.9e-23 111.3 124 62.9
Hma1.2p1_2594F.1_g325080 Hydrangea macrophylla HOM05D000187 ORTHO05D000230 9.9e-23 111.3 119 52.9
Hma1.2p1_1283F.1_g272850 Hydrangea macrophylla HOM05D000187 ORTHO05D000230 1.3e-22 110.9 119 52.9
Glyma.09G180300 Glycine max HOM05D000187 ORTHO05D000230 2.2e-22 110.2 121 56.2
Lj2g0003886 Lotus japonicus HOM05D000187 ORTHO05D000230 4.9e-22 109.0 125 56.0
FAN13G0080 Fragaria x ananassa HOM05D000187 ORTHO05D000230 6.4e-22 108.6 124 61.3
Lj5A153T49 Lonicera japonica HOM05D000187 ORTHO05D000230 6.4e-22 108.6 119 53.8
TPR.G28409 Trifolium pratense HOM05D000187 ORTHO05D000230 8.4e-22 108.2 121 55.4
VMungo0464G0328 Vigna mungo HOM05D000187 ORTHO05D000230 8.4e-22 108.2 123 56.1
FAN18G3138 Fragaria x ananassa HOM05D000187 ORTHO05D000230 1.1e-21 107.8 124 60.5
Nn4g23961 Nelumbo nucifera HOM05D000187 ORTHO05D000230 1.9e-21 107.1 121 57.9
arahy.Tifrunner.gnm1.ann1.35GK0Y Arachis hypogaea HOM05D000187 ORTHO05D000230 2.4e-21 106.7 119 54.6
FvH4_5g16700 Fragaria vesca HOM05D000187 ORTHO05D000230 3.2e-21 106.3 123 60.2
Duzib068G0915 Durio zibethinus HOM05D000187 ORTHO05D000230 9.3e-21 104.8 131 55.0
Atru.chr9.914 Acer truncatum HOM05D000187 ORTHO05D000230 2.1e-20 103.6 129 52.7
Dinv12227 Davidia involucrata HOM05D000187 ORTHO05D000230 2.7e-20 103.2 119 53.8
Gohir.A07G059400 Gossypium hirsutum HOM05D000187 ORTHO05D000230 2.7e-20 103.2 135 53.3
Lalb_Chr14g0370951 Lupinus albus HOM05D000187 ORTHO05D000230 2.7e-20 103.2 119 54.6
Gorai.001G067700 Gossypium raimondii HOM05D000187 ORTHO05D000230 3.5e-20 102.8 136 52.9
TAR535G0001 Trochodendron aralioides HOM05D000187 ORTHO05D000230 3.5e-20 102.8 116 56.0
Duzib084G0101 Durio zibethinus HOM05D000187 ORTHO05D000230 6.0e-20 102.1 121 53.7
Gohir.D07G064200 Gossypium hirsutum HOM05D000187 ORTHO05D000230 6.0e-20 102.1 135 52.6
Phvul.004G153501 Phaseolus vulgaris HOM05D000187 ORTHO05D000230 7.8e-20 101.7 123 53.7
Medtr8g106240 Medicago truncatula HOM05D000187 ORTHO05D000230 1.7e-19 100.5 127 53.5
TAR622G0266 Trochodendron aralioides HOM05D000187 ORTHO05D000230 1.5e-18 97.4 127 50.4
TPR.G12745 Trifolium pratense HOM05D000187 ORTHO05D000230 1.9e-18 97.1 113 55.8
Actinidia18917 Actinidia chinensis HOM05D000187 ORTHO05D000230 3.3e-18 96.3 122 51.6
Lalb_Chr09g0330701 Lupinus albus HOM05D000187 ORTHO05D000230 3.3e-18 96.3 124 52.4
Manes.01G015300 Manihot esculenta HOM05D000187 ORTHO05D000230 1.3e-17 94.4 131 48.1
Eucgr.B00829 Eucalyptus grandis HOM05D000187 ORTHO05D000230 3.6e-17 92.8 123 48.8
EL10Ac5g11483 Beta vulgaris HOM05D000187 ORTHO05D000230 4.8e-17 92.4 117 50.4
CiPaw.15G135800 Carya illinoinensis HOM05D000187 ORTHO05D000230 4.8e-17 92.4 123 49.6
Hma1.2p1_1596F.1_g292790 Hydrangea macrophylla HOM05D000187 ORTHO05D000230 4.8e-17 92.4 112 50.9
Ca_17238_v3 Cicer arietinum L. HOM05D000187 ORTHO05D000230 6.2e-17 92.0 109 56.0
Hund02352 Selenicereus undatus HOM05D000187 ORTHO05D000230 6.2e-17 92.0 119 47.9
Ah.11g045140 Amaranthus hybridus HOM05D000187 ORTHO05D000230 1.1e-16 91.3 114 50.9
Manes.05G133100 Manihot esculenta HOM05D000187 ORTHO05D000230 1.4e-16 90.9 123 48.0
Nn3g17958 Nelumbo nucifera HOM05D000187 ORTHO05D000230 1.4e-16 90.9 119 50.4
COL.COLO4_38531 Corchorus olitorius HOM05D000187 ORTHO05D000230 1.8e-16 90.5 110 53.6
TWI81G0466 Tripterygium wilfordii HOM05D000187 ORTHO05D000230 5.3e-16 89.0 130 50.0
Potri.012G053800 Populus trichocarpa HOM05D000187 ORTHO05D000230 9.0e-16 88.2 128 46.9
Sabra12G0037600 Salix brachista HOM05D000187 ORTHO05D000230 9.0e-16 88.2 128 46.9
Hma1.2p1_0942F.1_g239780 Hydrangea macrophylla HOM05D000187 ORTHO05D000230 1.2e-15 87.8 112 47.3
Hma1.2p1_0341F.1_g130520 Hydrangea macrophylla HOM05D000187 ORTHO05D000230 1.5e-15 87.4 112 46.4
Sc04g0003340 Simmondsia chinensis HOM05D000187 ORTHO05D000230 3.4e-15 86.3 125 47.2
Psat7g005520 Pisum sativum HOM05D000187 ORTHO05D000230 5.8e-15 85.5 123 49.6
Potri.015G043900 Populus trichocarpa HOM05D000187 ORTHO05D000230 1.7e-14 84.0 123 45.5
Cc04_g06840 Coffea canephora HOM05D000187 ORTHO05D000230 2.9e-14 83.2 124 48.4
Nitab4.5_0001456g0140 Nicotiana tabacum HOM05D000187 ORTHO05D000230 2.9e-14 83.2 123 48.0
vmacro16433 Vaccinium macrocarpon HOM05D000187 ORTHO05D000230 3.8e-14 82.8 123 48.8
Aqoxy3G00194 Aquilegia oxysepala HOM05D000187 ORTHO05D000230 4.9e-14 82.4 97 57.7
Lalb_Chr16g0387321 Lupinus albus HOM05D000187 ORTHO05D000230 1.4e-13 80.9 117 48.7
Sopen03g037790 Solanum pennellii HOM05D000187 ORTHO05D000230 1.4e-13 80.9 122 46.7
Nitab4.5_0006894g0010 Nicotiana tabacum HOM05D000187 ORTHO05D000230 1.9e-13 80.5 123 47.2
Solyc03g118840.3 Solanum lycopersicum HOM05D000187 ORTHO05D000230 1.9e-13 80.5 122 45.9
THA.LOC104812152 Tarenaya hassleriana HOM05D000187 ORTHO05D000230 5.4e-13 79.0 126 41.3
Ca_25470_v3 Cicer arietinum L. HOM05D000187 ORTHO05D000230 7.1e-13 78.6 121 45.5
PGR083G2722 Punica granatum HOM05D000187 ORTHO05D000230 7.1e-13 78.6 127 46.5
Sabra15G0041300 Salix brachista HOM05D001562 ORTHO05D000230 1.0e-11 74.7 124 41.9
TWI60G1712 Tripterygium wilfordii HOM05D000187 ORTHO05D000230 1.0e-11 74.7 127 44.9
arahy.Tifrunner.gnm1.ann1.UBBI2A Arachis hypogaea HOM05D000187 ORTHO05D000230 1.3e-11 74.3 111 45.0
Psat1g035040 Pisum sativum HOM05D000187 ORTHO05D000230 1.3e-11 74.3 130 46.9
MSTRG.9274 Avicennia marina HOM05D000187 ORTHO05D000230 2.3e-11 73.6 121 43.8
Nitab4.5_0000150g0050 Nicotiana tabacum HOM05D000187 ORTHO05D000230 2.3e-11 73.6 123 48.0
Glyma.07G097700 Glycine max HOM05D000187 ORTHO05D000230 5.1e-11 72.4 119 47.1
Migut.D01604 Erythranthe guttata HOM05D000187 ORTHO05D000230 6.7e-11 72.0 125 44.8
HanXRQChr17g0559771 Helianthus annuus HOM05D000187 ORTHO05D000230 6.7e-11 72.0 88 54.5
Medtr6g082620 Medicago truncatula HOM05D000187 ORTHO05D000230 1.1e-10 71.2 116 44.8
arahy.Tifrunner.gnm1.ann1.X8S18P Arachis hypogaea HOM05D000187 ORTHO05D000230 1.9e-10 70.5 109 44.0
Dinv16139 Davidia involucrata HOM05D000187 ORTHO05D000230 7.4e-10 68.6 125 41.6
CARHR018580 Cardamine hirsuta HOM05D000187 ORTHO05D000230 9.6e-10 68.2 112 36.6
arahy.Tifrunner.gnm1.ann1.FY93PX Arachis hypogaea HOM05D006836 ORTHO05D000230 2.8e-09 66.6 89 49.4
BolC8t49464H Brassica oleracea HOM05D000187 ORTHO05D000230 2.8e-09 66.6 116 39.7
PSO017G0577 Papaver somniferum HOM05D000187 ORTHO05D000230 4.8e-09 65.9 117 42.7
Sp5g28950 Schrenkiella parvula HOM05D000187 ORTHO05D000230 4.8e-09 65.9 127 41.7
C08p18300 Brassica napus HOM05D000187 ORTHO05D000230 1.1e-08 64.7 115 39.1
Aa31LG4G4090 Aethionema arabicum HOM05D000187 ORTHO05D000230 1.8e-08 63.9 131 38.2
Lsat_1_v5_gn_8_142020 Lactuca sativa HOM05D000187 ORTHO05D000230 3.1e-08 63.2 111 43.2
Rhsim08G0130200 Rhododendron simsii HOM05D000187 ORTHO05D000230 3.1e-08 63.2 119 45.4
Thhalv10018747m.g Eutrema salsugineum HOM05D000187 ORTHO05D000230 5.3e-08 62.4 120 40.0
vmacro17698 Vaccinium macrocarpon HOM05D000187 ORTHO05D000230 6.9e-08 62.0 100 49.0
AT1G73760 Arabidopsis thaliana HOM05D000187 ORTHO05D000230 9.0e-08 61.6 122 41.0
A08p30610 Brassica napus HOM05D000187 ORTHO05D000230 1.5e-07 60.8 116 39.7
Lalb_Chr24g0397961 Lupinus albus HOM05D000187 ORTHO05D000230 1.5e-07 60.8 114 44.7
VMungo1309G0166 Vigna mungo HOM05D000680 ORTHO05D000230 1.5e-07 60.8 79 53.2
BcaB03g15727 Brassica carinata HOM05D000187 ORTHO05D000230 2.0e-07 60.5 123 39.0
PSO478G0597 Papaver somniferum HOM05D000187 ORTHO05D000230 2.0e-07 60.5 113 42.5
Sp1g16030 Schrenkiella parvula HOM05D000187 ORTHO05D000230 2.0e-07 60.5 115 36.5
Carub.0001s1767 Capsella rubella HOM05D000187 ORTHO05D000230 4.5e-07 59.3 116 34.5
Sed0023942 Sechium edule HOM05D000187 ORTHO05D000230 4.5e-07 59.3 112 37.5
AL1G30330 Arabidopsis lyrata HOM05D000187 ORTHO05D000230 5.8e-07 58.9 114 36.8
Carub.0002s2051 Capsella rubella HOM05D000187 ORTHO05D000230 7.6e-07 58.5 124 35.5
Ciclev10020624m.g Citrus clementina HOM05D000187 ORTHO05D000230 1.0e-06 58.2 42 73.8
BcaB03g15081 Brassica carinata HOM05D000187 ORTHO05D000230 1.3e-06 57.8 36 75.0
Peaxi162Scf01127g00032 Petunia axillaris HOM05D000187 ORTHO05D000230 1.3e-06 57.8 124 43.5
AL2G33570 Arabidopsis lyrata HOM05D000187 ORTHO05D000230 1.7e-06 57.4 123 39.0
BraA08t34992Z Brassica rapa HOM05D000187 ORTHO05D000230 1.7e-06 57.4 116 37.9
CARHR066830 Cardamine hirsuta HOM05D000187 ORTHO05D000230 1.7e-06 57.4 122 38.5
Thhalv10007935m.g Eutrema salsugineum HOM05D000187 ORTHO05D000230 2.9e-06 56.6 114 36.8
Peaxi162Scf00683g00346 Petunia axillaris HOM05D000187 ORTHO05D000230 2.9e-06 56.6 87 52.9
Aa31LG7G3050 Aethionema arabicum HOM05D000187 ORTHO05D000230 3.8e-06 56.2 123 38.2
DCAR_023221 Daucus carota HOM05D000187 ORTHO05D000230 4.9e-06 55.8 48 60.4


User provided reference genes

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