Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT11G0762 Cannabis sativa HOM05D004945 ORTHO05D005536 2.9e-47 191.4 90 100.0
Haze_06091 Corylus avellana HOM05D004945 ORTHO05D005536 1.0e-39 166.4 88 83.0
CiPaw.09G075900 Carya illinoinensis HOM05D004945 ORTHO05D005536 1.9e-38 162.2 90 81.1
MD13G1241900 Malus domestica HOM05D004945 ORTHO05D005536 4.3e-38 161.0 90 81.1
Sed0005101 Sechium edule HOM05D004945 ORTHO05D005536 5.6e-38 160.6 88 84.1
Sed0015624 Sechium edule HOM05D004945 ORTHO05D005536 7.3e-38 160.2 88 84.1
Hma1.2p1_0517F.1_g170730 Hydrangea macrophylla HOM05D004945 ORTHO05D005536 1.6e-37 159.1 88 80.7
CiPaw.10G063900 Carya illinoinensis HOM05D004945 ORTHO05D005536 2.1e-37 158.7 89 79.8
MD07G1027600 Malus domestica HOM05D004945 ORTHO05D005536 2.1e-37 158.7 90 80.0
Actinidia38805 Actinidia chinensis HOM05D004945 ORTHO05D005536 2.8e-37 158.3 88 80.7
ClCG06G013580 Citrullus lanatus HOM05D004945 ORTHO05D005536 2.8e-37 158.3 88 83.0
Prupe.1G075600 Prunus persica HOM05D004945 ORTHO05D005536 3.6e-37 157.9 90 80.0
TAR625G1304 Trochodendron aralioides HOM05D004945 ORTHO05D005536 2.3e-36 155.2 88 77.3
CsaV3_1G031860 Cucumis sativus L. HOM05D004945 ORTHO05D005536 4.0e-36 154.5 88 81.8
Duzib150G1578 Durio zibethinus HOM05D004945 ORTHO05D005536 6.8e-36 153.7 89 78.7
Rhsim08G0249700 Rhododendron simsii HOM05D004945 ORTHO05D005536 8.9e-36 153.3 89 80.9
Cpa.g.sc95.12 Carica papaya HOM05D004945 ORTHO05D005536 1.2e-35 152.9 88 79.5
MELO3C017430.2 Cucumis melo HOM05D004945 ORTHO05D005536 1.5e-35 152.5 88 79.5
PGR142G1282 Punica granatum HOM05D004945 ORTHO05D005536 1.5e-35 152.5 88 77.3
Thecc.09G185900 Theobroma cacao HOM05D004945 ORTHO05D005536 1.5e-35 152.5 89 77.5
TAR636G3350 Trochodendron aralioides HOM05D004945 ORTHO05D005536 4.4e-35 151.0 88 76.1
TWI34G0510 Tripterygium wilfordii HOM05D004945 ORTHO05D005536 7.5e-35 150.2 88 75.0
Potri.018G142500 Populus trichocarpa HOM05D004945 ORTHO05D005536 9.8e-35 149.8 88 76.1
CSS0028266 Camellia sinensis var. sinensis HOM05D004945 ORTHO05D005536 2.2e-34 148.7 88 73.9
COL.COLO4_22793 Corchorus olitorius HOM05D004945 ORTHO05D005536 2.2e-34 148.7 88 75.0
Manes.06G020000 Manihot esculenta HOM05D004945 ORTHO05D005536 2.2e-34 148.7 90 73.3
TWI63G0641 Tripterygium wilfordii HOM05D004945 ORTHO05D005536 2.2e-34 148.7 88 72.7
Aqoxy1G01195 Aquilegia oxysepala HOM05D004945 ORTHO05D005536 2.9e-34 148.3 88 73.9
Duzib150G0603 Durio zibethinus HOM05D004945 ORTHO05D005536 2.9e-34 148.3 89 74.2
Gorai.004G025200 Gossypium raimondii HOM05D004945 ORTHO05D005536 3.7e-34 147.9 89 73.0
COL.COLO4_08559 Corchorus olitorius HOM05D004945 ORTHO05D005536 4.9e-34 147.5 88 73.9
Ciclev10010043m.g Citrus clementina HOM05D004945 ORTHO05D005536 6.4e-34 147.1 90 72.2
QL11p013920 Quercus lobata HOM05D004945 ORTHO05D005536 6.4e-34 147.1 88 73.9
Sabra18G0116400 Salix brachista HOM05D004945 ORTHO05D005536 6.4e-34 147.1 88 75.0
QL11p014429 Quercus lobata HOM05D004945 ORTHO05D005536 8.3e-34 146.7 88 72.7
Sc15g0001010 Simmondsia chinensis HOM05D004945 ORTHO05D005536 1.4e-33 146.0 88 76.1
THA.LOC104803956 Tarenaya hassleriana HOM05D004945 ORTHO05D005536 1.4e-33 146.0 88 76.1
THA.LOC104803979 Tarenaya hassleriana HOM05D004945 ORTHO05D005536 1.4e-33 146.0 88 76.1
Atru.chr7.757 Acer truncatum HOM05D004945 ORTHO05D005536 1.9e-33 145.6 87 75.9
Atru.chr7.779 Acer truncatum HOM05D004945 ORTHO05D005536 1.9e-33 145.6 87 75.9
Gohir.D08G028100 Gossypium hirsutum HOM05D004945 ORTHO05D005536 1.9e-33 145.6 89 71.9
Potri.006G075600 Populus trichocarpa HOM05D004945 ORTHO05D005536 3.2e-33 144.8 88 69.3
Sc12g0011140 Simmondsia chinensis HOM05D004945 ORTHO05D005536 3.2e-33 144.8 88 76.1
DCAR_007670 Daucus carota HOM05D004945 ORTHO05D005536 4.1e-33 144.4 90 74.4
Gohir.A08G017500 Gossypium hirsutum HOM05D004945 ORTHO05D005536 5.4e-33 144.1 89 71.9
RcHm_v2.0_Chr4g0399651 Rosa chinensis HOM05D004945 ORTHO05D005536 5.4e-33 144.1 85 75.3
THA.LOC104820006 Tarenaya hassleriana HOM05D004945 ORTHO05D005536 9.2e-33 143.3 88 72.7
Gohir.A13G208500 Gossypium hirsutum HOM05D004945 ORTHO05D005536 2.7e-32 141.7 89 67.4
PGSC0003DMG400026503 Solanum tuberosum HOM05D004945 ORTHO05D005536 2.7e-32 141.7 87 73.6
Gohir.D13G212800 Gossypium hirsutum HOM05D004945 ORTHO05D005536 3.5e-32 141.4 89 69.7
Gorai.013G243200 Gossypium raimondii HOM05D004945 ORTHO05D005536 3.5e-32 141.4 89 69.7
SHI03058 Sapria himalayana HOM05D004945 ORTHO05D005536 4.6e-32 141.0 89 69.7
Gohir.D13G212900 Gossypium hirsutum HOM05D004945 ORTHO05D005536 6.0e-32 140.6 89 66.3
ATR0626G412 Amborella trichopoda HOM05D004945 ORTHO05D005536 7.8e-32 140.2 87 73.6
Eucgr.C00118 Eucalyptus grandis HOM05D004945 ORTHO05D005536 7.8e-32 140.2 88 70.5
Gohir.A13G208400 Gossypium hirsutum HOM05D004945 ORTHO05D005536 1.0e-31 139.8 89 68.5
Nitab4.5_0003757g0090 Nicotiana tabacum HOM05D004945 ORTHO05D005536 1.7e-31 139.0 83 73.5
Solyc06g063310.2 Solanum lycopersicum HOM05D004945 ORTHO05D005536 2.3e-31 138.7 87 70.1
Sopen06g022780 Solanum pennellii HOM05D004945 ORTHO05D005536 2.3e-31 138.7 87 70.1
CAN.G308.14 Capsicum annuum HOM05D004945 ORTHO05D005536 3.0e-31 138.3 90 71.1
FAN07G0945 Fragaria x ananassa HOM05D004945 ORTHO05D005536 3.0e-31 138.3 85 70.6
Migut.D00890 Erythranthe guttata HOM05D004945 ORTHO05D005536 5.1e-31 137.5 87 67.8
Hma1.2p1_1111F.1_g258380 Hydrangea macrophylla HOM05D004945 ORTHO05D005536 5.1e-31 137.5 92 72.8
FvH4_4g07310 Fragaria vesca HOM05D004945 ORTHO05D005536 8.6e-31 136.7 85 69.4
Lsat_1_v5_gn_1_39460 Lactuca sativa HOM05D004945 ORTHO05D005536 8.6e-31 136.7 88 67.0
QL11p013931 Quercus lobata HOM05D004945 ORTHO05D005536 1.1e-30 136.3 88 70.5
Phvul.007G156600 Phaseolus vulgaris HOM05D004945 ORTHO05D005536 1.5e-30 136.0 87 67.8
Aqoxy7G02794 Aquilegia oxysepala HOM05D004945 ORTHO05D005536 1.9e-30 135.6 89 69.7
Cc04_g00230 Coffea canephora HOM05D004945 ORTHO05D005536 3.3e-30 134.8 87 69.0
BcaB03g12628 Brassica carinata HOM05D004945 ORTHO05D005536 4.3e-30 134.4 88 67.0
THA.LOC104814658 Tarenaya hassleriana HOM05D004945 ORTHO05D005536 7.3e-30 133.7 88 70.5
Ah.13g075140 Amaranthus hybridus HOM05D004945 ORTHO05D005536 9.5e-30 133.3 90 70.0
Migut.I01191 Erythranthe guttata HOM05D004945 ORTHO05D005536 9.5e-30 133.3 87 69.0
QL11p014451 Quercus lobata HOM05D004945 ORTHO05D005536 1.2e-29 132.9 88 69.3
Sp7g27810 Schrenkiella parvula HOM05D004945 ORTHO05D005536 1.2e-29 132.9 88 67.0
BcaC01g01207 Brassica carinata HOM05D004945 ORTHO05D005536 2.1e-29 132.1 88 65.9
A08p19460 Brassica napus HOM05D004945 ORTHO05D005536 2.1e-29 132.1 88 65.9
C03p88960 Brassica napus HOM05D004945 ORTHO05D005536 2.1e-29 132.1 88 65.9
BolC3t21206H Brassica oleracea HOM05D004945 ORTHO05D005536 2.1e-29 132.1 88 65.9
BraA08t33908Z Brassica rapa HOM05D004945 ORTHO05D005536 2.1e-29 132.1 88 65.9
Thhalv10026677m.g Eutrema salsugineum HOM05D004945 ORTHO05D005536 4.7e-29 131.0 88 68.2
Ah.04g153390 Amaranthus hybridus HOM05D004945 ORTHO05D005536 6.2e-29 130.6 90 68.9
Carub.0007s1064 Capsella rubella HOM05D004945 ORTHO05D005536 6.2e-29 130.6 88 67.0
AT4G30010 Arabidopsis thaliana HOM05D004945 ORTHO05D005536 1.1e-28 129.8 88 65.9
arahy.Tifrunner.gnm1.ann1.M8DR4H Arachis hypogaea HOM05D004945 ORTHO05D005536 1.1e-28 129.8 91 67.0
arahy.Tifrunner.gnm1.ann1.ZYC9F0 Arachis hypogaea HOM05D004945 ORTHO05D005536 1.1e-28 129.8 91 67.0
CARHR237930 Cardamine hirsuta HOM05D004945 ORTHO05D005536 1.1e-28 129.8 88 65.9
Glyma.15G165900 Glycine max HOM05D004945 ORTHO05D005536 1.1e-28 129.8 88 63.6
BcaNung00508 Brassica carinata HOM05D004945 ORTHO05D005536 1.4e-28 129.4 88 65.9
TPR.G7575 Trifolium pratense HOM05D004945 ORTHO05D005536 1.4e-28 129.4 87 65.5
A03p59370 Brassica napus HOM05D004945 ORTHO05D005536 1.8e-28 129.0 88 67.0
C07p57400 Brassica napus HOM05D004945 ORTHO05D005536 1.8e-28 129.0 88 67.0
BolC7t46209H Brassica oleracea HOM05D004945 ORTHO05D005536 1.8e-28 129.0 88 67.0
BraA03t14994Z Brassica rapa HOM05D004945 ORTHO05D005536 1.8e-28 129.0 88 67.0
Ca_02105_v3 Cicer arietinum L. HOM05D004945 ORTHO05D005536 1.8e-28 129.0 87 65.5
Glyma.09G059600 Glycine max HOM05D004945 ORTHO05D005536 2.3e-28 128.6 88 63.6
EL10Ac3g07227 Beta vulgaris HOM05D004945 ORTHO05D005536 3.1e-28 128.3 90 65.6
PSO063G0987 Papaver somniferum HOM05D004945 ORTHO05D005536 3.1e-28 128.3 88 65.9
PSO170G0997 Papaver somniferum HOM05D004945 ORTHO05D005536 3.1e-28 128.3 88 65.9
AL7G22230 Arabidopsis lyrata HOM05D004945 ORTHO05D005536 4.0e-28 127.9 88 64.8
unitig_32.g11008 Utricularia gibba HOM05D004945 ORTHO05D005536 4.0e-28 127.9 88 68.2
Psat1g144120 Pisum sativum HOM05D004945 ORTHO05D005536 5.2e-28 127.5 87 65.5
AUR62018340 Chenopodium quinoa HOM05D004945 ORTHO05D005536 6.8e-28 127.1 90 65.6
AUR62044702 Chenopodium quinoa HOM05D004945 ORTHO05D005536 6.8e-28 127.1 90 65.6
AUR62044703 Chenopodium quinoa HOM05D004945 ORTHO05D005536 6.8e-28 127.1 90 65.6
Psat1g144160 Pisum sativum HOM05D004945 ORTHO05D005536 6.8e-28 127.1 87 65.5
Aa31LG2G20550 Aethionema arabicum HOM05D004945 ORTHO05D005536 8.9e-28 126.7 88 64.8
CDE04G2745 Ceratophyllum demersum HOM05D004945 ORTHO05D005536 8.9e-28 126.7 90 66.7
AUR62030327 Chenopodium quinoa HOM05D004945 ORTHO05D005536 2.0e-27 125.6 85 67.1
Lj6g0012502 Lotus japonicus HOM05D004945 ORTHO05D005536 2.0e-27 125.6 88 63.6
Lalb_Chr11g0074741 Lupinus albus HOM05D004945 ORTHO05D005536 2.6e-27 125.2 88 63.6
MD10G1108200 Malus domestica HOM05D004945 ORTHO05D005536 2.6e-27 125.2 89 66.3
Medtr2g037990 Medicago truncatula HOM05D004945 ORTHO05D005536 3.4e-27 124.8 87 62.1
AUR62031980 Chenopodium quinoa HOM05D004945 ORTHO05D005536 5.8e-27 124.0 82 67.1
THA.LOC104811777 Tarenaya hassleriana HOM05D004945 ORTHO05D005536 9.9e-27 123.2 88 62.5
unitig_748.g8030 Utricularia gibba HOM05D004945 ORTHO05D005536 9.9e-27 123.2 88 65.9
AUR62023991 Chenopodium quinoa HOM05D004945 ORTHO05D005536 8.3e-26 120.2 90 62.2
ECA247G2100 Erigeron canadensis HOM05D004945 ORTHO05D005536 1.9e-22 109.0 91 58.2
THA.LOC109116878 Tarenaya hassleriana HOM05D004945 ORTHO05D005536 1.9e-22 109.0 57 86.0
Dinv25512 Davidia involucrata HOM05D004945 ORTHO05D005536 9.5e-22 106.7 63 76.2
A01p08110 Brassica napus HOM05D004945 ORTHO05D005536 6.8e-20 100.5 83 56.6
HanXRQChr15g0497481 Helianthus annuus HOM05D004945 ORTHO05D005536 1.7e-18 95.9 60 68.3
BcaB03g15243 Brassica carinata HOM05D004945 ORTHO05D005536 3.2e-17 91.7 75 56.0
Nitab4.5_0000617g0120 Nicotiana tabacum HOM05D004945 ORTHO05D005536 5.4e-17 90.9 57 64.9
Os02g0175800 Oryza sativa ssp. japonica HOM05D004945 ORTHO05D005536 1.2e-16 89.7 88 45.5
PGSC0003DMG400028757 Solanum tuberosum HOM05D004945 ORTHO05D005536 1.3e-15 86.3 54 66.7
Nitab4.5_0006750g0010 Nicotiana tabacum HOM05D004945 ORTHO05D005536 2.3e-15 85.5 57 61.4
arahy.Tifrunner.gnm1.ann1.2FH55K Arachis hypogaea HOM05D004945 ORTHO05D005536 1.2e-13 79.7 61 59.0
arahy.Tifrunner.gnm1.ann1.U71V3Q Arachis hypogaea HOM05D004945 ORTHO05D005536 1.2e-13 79.7 61 59.0
SMO361G0023 Selaginella moellendorffii HOM05D004945 ORTHO05D005536 6.2e-13 77.4 85 40.0
Oeu001819.1 Olea europaea HOM05D004945 ORTHO05D005536 1.2e-11 73.2 76 48.7
GSVIVG01010862001 Vitis vinifera HOM05D004945 ORTHO05D005536 2.2e-10 68.9 56 57.1
Nitab4.5_0002354g0060 Nicotiana tabacum HOM05D004945 ORTHO05D005536 1.1e-09 66.6 45 62.2
Pp3c25_5460 Physcomitrium patens HOM05D004945 ORTHO05D005536 1.1e-09 66.6 79 40.5
Pp3c25_5480 Physcomitrium patens HOM05D004945 ORTHO05D005536 1.1e-09 66.6 79 40.5
Nn8g40786 Nelumbo nucifera HOM05D004945 ORTHO05D005536 2.4e-09 65.5 44 61.4
CBR_g50842 Chara braunii HOM05D004945 ORTHO05D005536 2.7e-08 62.0 74 39.2
Mapoly0011s0061 Marchantia polymorpha HOM05D004945 ORTHO05D005536 2.7e-08 62.0 81 38.3
Pp3c5_15650 Physcomitrium patens HOM05D004945 ORTHO05D005536 2.7e-08 62.0 80 40.0
AagrBONN_evm.TU.Sc2ySwM_344.4974 Anthoceros agrestis HOM05D004945 ORTHO05D005536 1.3e-07 59.7 82 36.6
BcaC09g51779 Brassica carinata HOM05D004945 ORTHO05D005536 1.3e-07 59.7 69 40.6
BcaNung06654 Brassica carinata HOM05D004945 ORTHO05D005536 1.3e-07 59.7 69 40.6
MCO09G227 Micromonas commoda HOM05D004945 ORTHO05D005536 1.7e-07 59.3 84 32.1
Pp3c5_15280 Physcomitrium patens HOM05D004945 ORTHO05D005536 3.9e-07 58.2 77 35.1
AagrBONN_evm.TU.Sc2ySwM_228.1937 Anthoceros agrestis HOM05D004945 ORTHO05D005536 5.1e-07 57.8 70 35.7


User provided reference genes

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