Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT11G0677 Cannabis sativa HOM05D005136 ORTHO05D006619 1.6e-77 292.7 155 100.0
Thecc.02G123900 Theobroma cacao HOM05D005136 ORTHO05D006619 6.4e-58 227.6 155 81.3
COL.COLO4_32439 Corchorus olitorius HOM05D005136 ORTHO05D006619 8.3e-58 227.3 155 79.4
Duzib132G0024 Durio zibethinus HOM05D005136 ORTHO05D006619 7.8e-56 220.7 155 78.7
Sed0024996 Sechium edule HOM05D005136 ORTHO05D006619 7.8e-56 220.7 155 77.4
Cfa005022 Carpinus fangiana HOM05D005136 ORTHO05D006619 1.0e-55 220.3 155 80.0
ClCG11G004520 Citrullus lanatus HOM05D005136 ORTHO05D006619 1.0e-55 220.3 155 77.4
Haze_02365 Corylus avellana HOM05D005136 ORTHO05D006619 1.0e-55 220.3 155 80.0
Ciclev10029521m.g Citrus clementina HOM05D005136 ORTHO05D006619 2.3e-55 219.2 155 77.4
Manes.17G099700 Manihot esculenta HOM05D005136 ORTHO05D006619 2.3e-55 219.2 155 78.7
Cc02_g17760 Coffea canephora HOM05D005136 ORTHO05D006619 3.9e-55 218.4 155 78.1
MELO3C020986.2 Cucumis melo HOM05D005136 ORTHO05D006619 5.1e-55 218.0 155 76.8
CiPaw.05G062700 Carya illinoinensis HOM05D005136 ORTHO05D006619 8.6e-55 217.2 155 78.7
CsaV3_2G014570 Cucumis sativus L. HOM05D005136 ORTHO05D006619 8.6e-55 217.2 155 76.8
Dinv23543 Davidia involucrata HOM05D005136 ORTHO05D006619 8.6e-55 217.2 155 77.4
Potri.004G152700 Populus trichocarpa HOM05D005136 ORTHO05D006619 8.6e-55 217.2 155 76.1
RcHm_v2.0_Chr6g0263731 Rosa chinensis HOM05D005136 ORTHO05D006619 1.5e-54 216.5 153 79.7
Cc02_g20820 Coffea canephora HOM05D005136 ORTHO05D006619 2.5e-54 215.7 155 77.4
Gohir.D12G018500 Gossypium hirsutum HOM05D005136 ORTHO05D006619 2.5e-54 215.7 155 76.1
Gorai.008G018800 Gossypium raimondii HOM05D005136 ORTHO05D006619 2.5e-54 215.7 155 76.1
FvH4_2g08450 Fragaria vesca HOM05D005136 ORTHO05D006619 3.3e-54 215.3 153 79.1
FAN24G0166 Fragaria x ananassa HOM05D005136 ORTHO05D006619 3.3e-54 215.3 153 79.1
Gohir.A12G017900 Gossypium hirsutum HOM05D005136 ORTHO05D006619 3.3e-54 215.3 155 76.1
Atru.chr8.1229 Acer truncatum HOM05D005136 ORTHO05D006619 5.6e-54 214.5 155 76.8
FAN15G2434 Fragaria x ananassa HOM05D005136 ORTHO05D006619 7.3e-54 214.2 153 78.4
Lj3g0003138 Lotus japonicus HOM05D005136 ORTHO05D006619 9.5e-54 213.8 155 78.1
QL11p043069 Quercus lobata HOM05D005136 ORTHO05D006619 9.5e-54 213.8 154 77.3
FAN27G1698 Fragaria x ananassa HOM05D005136 ORTHO05D006619 1.2e-53 213.4 153 78.4
Cpa.g.sc31.66 Carica papaya HOM05D005136 ORTHO05D006619 1.6e-53 213.0 155 78.1
vmacro08119 Vaccinium macrocarpon HOM05D005136 ORTHO05D006619 1.6e-53 213.0 155 76.1
MD05G1068400 Malus domestica HOM05D005136 ORTHO05D006619 2.8e-53 212.2 155 76.8
Rhsim11G0174400 Rhododendron simsii HOM05D005136 ORTHO05D006619 1.1e-52 210.3 155 75.5
Glyma.04G123300 Glycine max HOM05D005136 ORTHO05D006619 1.4e-52 209.9 155 76.1
MD10G1078600 Malus domestica HOM05D005136 ORTHO05D006619 1.8e-52 209.5 155 76.1
CiPaw.06G136800 Carya illinoinensis HOM05D005136 ORTHO05D006619 3.1e-52 208.8 155 75.5
Dinv42084 Davidia involucrata HOM05D005136 ORTHO05D006619 3.1e-52 208.8 155 76.8
Prupe.8G100500 Prunus persica HOM05D005136 ORTHO05D006619 3.1e-52 208.8 155 78.1
VMungo1215G0362 Vigna mungo HOM05D005136 ORTHO05D006619 3.1e-52 208.8 155 75.5
Phvul.002G127500 Phaseolus vulgaris HOM05D005136 ORTHO05D006619 5.2e-52 208.0 155 76.1
TAR628G0554 Trochodendron aralioides HOM05D005136 ORTHO05D006619 5.2e-52 208.0 155 74.2
TAR628G1226 Trochodendron aralioides HOM05D005136 ORTHO05D006619 5.2e-52 208.0 155 74.2
PGR042G3747 Punica granatum HOM05D005136 ORTHO05D006619 8.9e-52 207.2 155 76.1
Hma1.2p1_1375F.1_g278970 Hydrangea macrophylla HOM05D005136 ORTHO05D006619 1.2e-51 206.8 155 75.5
Hma1.2p1_3179F.1_g333696 Hydrangea macrophylla HOM05D005136 ORTHO05D006619 1.2e-51 206.8 155 75.5
TAR625G1013 Trochodendron aralioides HOM05D005136 ORTHO05D006619 1.2e-51 206.8 155 74.8
CSS0002049 Camellia sinensis var. sinensis HOM05D005136 ORTHO05D006619 2.6e-51 205.7 155 75.5
CSS0016345 Camellia sinensis var. sinensis HOM05D005136 ORTHO05D006619 2.6e-51 205.7 155 75.5
CSS0049550 Camellia sinensis var. sinensis HOM05D005136 ORTHO05D006619 2.6e-51 205.7 155 75.5
Hund22263 Selenicereus undatus HOM05D005136 ORTHO05D006619 3.4e-51 205.3 155 74.8
Nitab4.5_0009564g0010 Nicotiana tabacum HOM05D005136 ORTHO05D006619 4.4e-51 204.9 155 73.5
Sopen08g026750 Solanum pennellii HOM05D005136 ORTHO05D006619 4.4e-51 204.9 155 73.5
Eucgr.G00447 Eucalyptus grandis HOM05D005136 ORTHO05D006619 7.6e-51 204.1 155 74.2
Lalb_Chr19g0138591 Lupinus albus HOM05D005136 ORTHO05D006619 9.9e-51 203.8 153 74.5
PGSC0003DMG400026262 Solanum tuberosum HOM05D005136 ORTHO05D006619 9.9e-51 203.8 155 73.5
Solyc08g078240.4 Solanum lycopersicum HOM05D005136 ORTHO05D006619 1.7e-50 203.0 152 73.7
Medtr3g116260 Medicago truncatula HOM05D005136 ORTHO05D006619 2.2e-50 202.6 155 69.7
Peaxi162Scf00346g00043 Petunia axillaris HOM05D005136 ORTHO05D006619 2.9e-50 202.2 155 72.9
CSS0025161 Camellia sinensis var. sinensis HOM05D005136 ORTHO05D006619 4.9e-50 201.4 155 74.2
Ca_15377_v3 Cicer arietinum L. HOM05D005136 ORTHO05D006619 4.9e-50 201.4 155 72.9
Sc09g0004050 Simmondsia chinensis HOM05D005136 ORTHO05D006619 8.4e-50 200.7 155 73.5
DCAR_026977 Daucus carota HOM05D005136 ORTHO05D006619 1.1e-49 200.3 155 72.9
Nn1g02125 Nelumbo nucifera HOM05D005136 ORTHO05D006619 1.4e-49 199.9 153 72.5
Migut.B00252 Erythranthe guttata HOM05D005136 ORTHO05D006619 1.9e-49 199.5 155 72.3
Lalb_Chr23g0265461 Lupinus albus HOM05D005136 ORTHO05D006619 2.4e-49 199.1 155 69.7
MBI16_g37741_MAGBIO Magnolia biondii HOM05D005136 ORTHO05D006619 2.4e-49 199.1 155 71.6
Lj5P199T42 Lonicera japonica HOM05D005136 ORTHO05D006619 3.2e-49 198.7 155 73.5
Psat5g007800 Pisum sativum HOM05D005136 ORTHO05D006619 3.2e-49 198.7 155 71.0
Psat5g103000 Pisum sativum HOM05D005136 ORTHO05D006619 3.2e-49 198.7 155 71.0
THA.LOC104823526 Tarenaya hassleriana HOM05D005136 ORTHO05D006619 2.7e-48 195.7 155 72.9
TWI31G0294 Tripterygium wilfordii HOM05D005136 ORTHO05D006619 2.7e-48 195.7 155 71.6
SalBow6G6037 Salvia bowleyana HOM05D005136 ORTHO05D006619 7.8e-48 194.1 155 71.0
Ah.01g016850 Amaranthus hybridus HOM05D005136 ORTHO05D006619 1.7e-47 193.0 156 70.5
Aqoxy5G01670 Aquilegia oxysepala HOM05D005136 ORTHO05D006619 1.7e-47 193.0 155 69.7
CAN.G1312.12 Capsicum annuum HOM05D005136 ORTHO05D006619 3.0e-47 192.2 155 71.6
Glyma.09G214900 Glycine max HOM05D005136 ORTHO05D006619 3.0e-47 192.2 147 74.1
PSO700G0271 Papaver somniferum HOM05D005136 ORTHO05D006619 5.1e-47 191.4 157 71.3
TWI79G0765 Tripterygium wilfordii HOM05D005136 ORTHO05D006619 5.1e-47 191.4 156 69.9
EL10Ac9g21088 Beta vulgaris HOM05D005136 ORTHO05D006619 8.7e-47 190.7 146 74.0
Oeu014338.1 Olea europaea HOM05D005136 ORTHO05D006619 8.7e-47 190.7 155 67.7
Thhalv10008721m.g Eutrema salsugineum HOM05D005136 ORTHO05D006619 1.1e-46 190.3 160 69.4
AUR62038311 Chenopodium quinoa HOM05D005136 ORTHO05D006619 1.5e-46 189.9 155 70.3
AUR62023928 Chenopodium quinoa HOM05D005136 ORTHO05D006619 3.3e-46 188.7 155 69.7
MSTRG.16796 Avicennia marina HOM05D005136 ORTHO05D006619 5.6e-46 188.0 155 71.6
SGA_v2.0_scaffold106G30693 Striga asiatica HOM05D005136 ORTHO05D006619 5.6e-46 188.0 155 68.4
Lsat_1_v5_gn_7_89621 Lactuca sativa HOM05D005136 ORTHO05D006619 7.3e-46 187.6 156 69.2
BcaB03g13232 Brassica carinata HOM05D005136 ORTHO05D006619 2.1e-45 186.0 155 68.4
ATR1120G109 Amborella trichopoda HOM05D005136 ORTHO05D006619 2.8e-45 185.7 156 66.7
AL1G22940 Arabidopsis lyrata HOM05D005136 ORTHO05D006619 2.8e-45 185.7 158 68.4
CARHR012080 Cardamine hirsuta HOM05D005136 ORTHO05D006619 2.8e-45 185.7 155 67.1
HPP92_013432 Vanilla planifolia HOM05D005136 ORTHO05D006619 2.8e-45 185.7 156 66.0
HPP92_027116 Vanilla planifolia HOM05D005136 ORTHO05D006619 2.8e-45 185.7 156 66.0
AT1G11760 Arabidopsis thaliana HOM05D005136 ORTHO05D006619 4.8e-45 184.9 159 67.9
HanXRQChr05g0152051 Helianthus annuus HOM05D005136 ORTHO05D006619 4.8e-45 184.9 155 69.7
Carub.0001s1142 Capsella rubella HOM05D005136 ORTHO05D006619 1.4e-44 183.3 157 68.2
Nn1g05055 Nelumbo nucifera HOM05D005136 ORTHO05D006619 1.4e-44 183.3 155 67.1
Gorai.005G228100 Gossypium raimondii HOM05D005136 ORTHO05D006619 2.4e-44 182.6 155 67.7
Sp1g10380 Schrenkiella parvula HOM05D005136 ORTHO05D006619 4.0e-44 181.8 156 67.3
Gohir.D02G202838 Gossypium hirsutum HOM05D005136 ORTHO05D006619 6.9e-44 181.0 155 67.1
Gohir.A03G179300 Gossypium hirsutum HOM05D005136 ORTHO05D006619 1.2e-43 180.3 155 66.5
Aa31LG1G2990 Aethionema arabicum HOM05D005136 ORTHO05D006619 1.5e-43 179.9 155 65.2
BolC8t49124H Brassica oleracea HOM05D004968 ORTHO05D005922 3.4e-43 178.7 152 65.8
C08p14950 Brassica napus HOM05D004968 ORTHO05D005922 9.9e-43 177.2 152 65.1
Actinidia00512 Actinidia chinensis HOM05D005136 ORTHO05D006619 1.1e-41 173.7 121 77.7
A08p33240 Brassica napus HOM05D004968 ORTHO05D005922 5.4e-41 171.4 147 66.0
BraA08t35243Z Brassica rapa HOM05D004968 ORTHO05D005922 5.4e-41 171.4 147 66.0
unitig_37.g12818 Utricularia gibba HOM05D005136 ORTHO05D006619 4.6e-40 168.3 158 63.9
Prupe.5G020100 Prunus persica HOM05D005136 ORTHO05D006619 2.1e-37 159.5 156 62.2
Nitab4.5_0002601g0030 Nicotiana tabacum HOM05D005136 ORTHO05D006619 2.8e-37 159.1 113 77.0
PSO170G5319 Papaver somniferum HOM05D005136 ORTHO05D006619 2.4e-36 156.0 122 74.6
Zm00001eb284000 Zea mays HOM05D005136 ORTHO05D006619 4.0e-36 155.2 156 57.1
Os10g0548400 Oryza sativa ssp. japonica HOM05D005136 ORTHO05D006619 1.2e-35 153.7 170 54.7
RcHm_v2.0_Chr6g0264001 Rosa chinensis HOM05D005136 ORTHO05D006619 1.2e-35 153.7 106 78.3
SalBow6G1117 Salvia bowleyana HOM05D005136 ORTHO05D006619 1.2e-35 153.7 114 74.6
ECA236G0931 Erigeron canadensis HOM05D005136 ORTHO05D006619 5.8e-35 151.4 156 60.3
TPR.G21542 Trifolium pratense HOM05D005136 ORTHO05D006619 9.3e-33 144.1 156 57.7
BcaB08g37416 Brassica carinata HOM05D005136 ORTHO05D006619 1.6e-32 143.3 155 60.6
CSS0021040 Camellia sinensis var. sinensis HOM05D005136 ORTHO05D006619 6.0e-32 141.4 148 60.1
Atru.chr5.2947 Acer truncatum HOM05D005136 ORTHO05D006619 1.9e-30 136.3 100 73.0
EL10Ac7g17776 Beta vulgaris HOM05D005136 ORTHO05D006619 9.6e-30 134.0 151 53.0
SHI23962 Sapria himalayana HOM05D005136 ORTHO05D006619 9.6e-30 134.0 140 56.4
CDE02G3080 Ceratophyllum demersum HOM05D005136 ORTHO05D006619 6.9e-28 127.9 84 77.4
Pp3c10_12480 Physcomitrium patens HOM05D005136 ORTHO05D006619 1.5e-27 126.7 139 49.6
Mapoly0003s0019 Marchantia polymorpha HOM05D005136 ORTHO05D006619 3.2e-25 119.0 127 52.8
SMO174G0113 Selaginella moellendorffii HOM05D005136 ORTHO05D006619 4.2e-25 118.6 140 49.3
EL10Ac8g18726 Beta vulgaris HOM05D006015 ORTHO05D007816 2.1e-24 116.3 109 58.7
EL10Ac9g21097 Beta vulgaris HOM05D006015 ORTHO05D006619 2.1e-24 116.3 109 58.7
Medtr3g116310 Medicago truncatula HOM05D005136 ORTHO05D006619 4.0e-20 102.1 78 66.7
Psat4g095600 Pisum sativum HOM05D005136 ORTHO05D006619 2.0e-19 99.8 79 63.3
Oeu014337.1 Olea europaea HOM05D005136 ORTHO05D006619 3.4e-19 99.0 79 59.5
Thecc.02G123800 Theobroma cacao HOM05D005136 ORTHO05D006619 1.0e-18 97.4 71 66.2
Sp2g23220 Schrenkiella parvula HOM05D005136 ORTHO05D006619 1.7e-18 96.7 86 61.6
COL.COLO4_32440 Corchorus olitorius HOM05D005136 ORTHO05D006619 5.0e-18 95.1 69 63.8
Gohir.A03G179400 Gossypium hirsutum HOM05D005136 ORTHO05D006619 3.2e-17 92.4 69 65.2
Gorai.005G228200 Gossypium raimondii HOM05D005136 ORTHO05D006619 4.2e-17 92.0 69 65.2
Gohir.D02G202857 Gossypium hirsutum HOM05D005136 ORTHO05D006619 5.5e-17 91.7 69 63.8
Hma1.2p1_0854F.1_g228935 Hydrangea macrophylla HOM05D005136 ORTHO05D006619 5.5e-17 91.7 71 63.4
Hma1.2p1_2665F.1_g326510 Hydrangea macrophylla HOM05D005136 ORTHO05D006619 5.5e-17 91.7 71 63.4
EL10Ac1g02225 Beta vulgaris HOM05D005136 ORTHO05D006619 1.2e-16 90.5 174 40.8
Lj4g0027023 Lotus japonicus HOM05D005136 ORTHO05D006619 3.0e-15 85.9 153 40.5
AagrBONN_evm.TU.Sc2ySwM_369.532 Anthoceros agrestis HOM05D005136 ORTHO05D006619 3.9e-15 85.5 151 40.4
Sc09g0004030 Simmondsia chinensis HOM05D005136 ORTHO05D006619 1.8e-12 76.6 78 64.1
Nitab4.5_0012262g0010 Nicotiana tabacum HOM05D005136 ORTHO05D006619 2.6e-11 72.8 72 51.4
Nitab4.5_0002541g0070 Nicotiana tabacum HOM05D005136 ORTHO05D024799 7.7e-11 71.2 72 51.4
Os07g0229100 Oryza sativa ssp. japonica HOM05D011003 ORTHO05D012370 3.2e-09 65.9 72 51.4
CAN.G1435.13 Capsicum annuum HOM05D005136 ORTHO05D024799 9.4e-09 64.3 70 47.1
ECA233G0803 Erigeron canadensis HOM05D005136 ORTHO05D006619 1.2e-08 63.9 126 41.3
Peaxi162Scf00316g00313 Petunia axillaris HOM05D005136 ORTHO05D006619 3.3e-06 55.8 51 60.8
Solyc09g082750.1 Solanum lycopersicum HOM05D005136 ORTHO05D024799 3.3e-06 55.8 72 38.9
HPP92_014777 Vanilla planifolia HOM05D005136 ORTHO05D006619 4.3e-06 55.5 72 40.3


User provided reference genes

Program Settings